Wall clock time and date at job start Wed Apr 1 2020 02:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46845 * 2 1 4 4 N 1.46491 * 109.47177 * 119.99718 * 2 1 3 5 5 C 1.46500 * 120.00376 * 300.00317 * 4 2 1 6 6 C 1.50699 * 109.47270 * 269.99825 * 5 4 2 7 7 H 1.08004 * 119.99749 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00340 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99808 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00490 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46783 * 59.99750 * 10 8 6 12 12 H 1.48500 * 109.47367 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47142 * 300.00362 * 10 8 6 14 14 C 1.34786 * 120.00089 * 120.00069 * 4 2 1 15 15 O 1.21276 * 120.00302 * 179.97438 * 14 4 2 16 16 C 1.50699 * 119.99675 * 0.02562 * 14 4 2 17 17 O 1.42900 * 109.47013 * 179.97438 * 16 14 4 18 18 C 1.35746 * 116.99632 * 179.97438 * 17 16 14 19 19 C 1.39367 * 119.73328 * 0.25591 * 18 17 16 20 20 C 1.36465 * 120.42917 * 180.25208 * 19 18 17 21 21 C 1.39959 * 119.79316 * 359.75145 * 20 19 18 22 22 C 1.46440 * 120.98231 * 180.02562 * 21 20 19 23 23 C 1.35847 * 118.19500 * 179.97438 * 22 21 20 24 24 C 1.41002 * 119.82168 * 359.97438 * 23 22 21 25 25 O 1.21793 * 119.15287 * 179.97438 * 24 23 22 26 26 O 1.34221 * 121.69342 * 0.02562 * 24 23 22 27 27 C 1.35034 * 121.46331 * 0.02562 * 26 24 23 28 28 C 1.38519 * 119.72157 * 179.97438 * 18 17 16 29 29 H 1.09000 * 109.46961 * 300.00175 * 1 2 3 30 30 H 1.09001 * 109.47022 * 60.00013 * 1 2 3 31 31 H 1.08996 * 109.46711 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47414 * 240.00107 * 2 1 3 33 33 H 1.09001 * 109.47364 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47300 * 299.99817 * 3 2 1 35 35 H 1.09000 * 109.47484 * 60.00145 * 3 2 1 36 36 H 1.09002 * 109.47073 * 29.99763 * 5 4 2 37 37 H 1.09000 * 109.47445 * 150.00007 * 5 4 2 38 38 H 0.97008 * 120.00054 * 179.97438 * 9 8 6 39 39 H 1.08998 * 109.47098 * 59.99559 * 16 14 4 40 40 H 1.09004 * 109.47169 * 299.99981 * 16 14 4 41 41 H 1.08002 * 119.78157 * 359.97438 * 19 18 17 42 42 H 1.08001 * 120.10019 * 179.76482 * 20 19 18 43 43 H 1.08005 * 120.90070 * 359.97438 * 22 21 20 44 44 H 1.07998 * 120.08744 * 179.97438 * 23 22 21 45 45 H 1.08002 * 120.11090 * 0.03219 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1961 5 6 1.6644 -0.1900 2.5267 6 6 2.7031 0.8019 2.9830 7 1 3.5431 1.0358 2.3457 8 6 2.5811 1.4108 4.2140 9 7 1.5585 1.1257 4.9902 10 14 3.8682 2.6409 4.7793 11 1 3.9233 3.7748 3.8219 12 1 3.5095 3.1481 6.1281 13 1 5.1954 1.9773 4.8373 14 6 2.7933 -1.7864 1.0725 15 8 3.1979 -2.3578 2.0627 16 6 3.1578 -2.3009 -0.2962 17 8 3.9797 -3.4625 -0.1651 18 6 4.3981 -4.0541 -1.3130 19 6 4.0243 -3.5169 -2.5434 20 6 4.4325 -4.1031 -3.7062 21 6 5.2361 -5.2482 -3.6629 22 6 5.6895 -5.8980 -4.8945 23 6 6.4679 -7.0061 -4.7865 24 6 6.8162 -7.4968 -3.5113 25 8 7.5143 -8.4914 -3.4287 26 8 6.3974 -6.8965 -2.3862 27 6 5.6208 -5.7925 -2.4235 28 6 5.1979 -5.1834 -1.2516 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 0.6904 0.2974 2.4843 37 1 1.6238 -1.0225 3.2291 38 1 1.4728 1.5538 5.8564 39 1 3.7029 -1.5300 -0.8408 40 1 2.2496 -2.5577 -0.8416 41 1 3.4038 -2.6336 -2.5769 42 1 4.1366 -3.6846 -4.6568 43 1 5.4125 -5.5068 -5.8623 44 1 6.8190 -7.5098 -5.6750 45 1 5.4867 -5.5914 -0.2942 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053185940.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:52 Heat of formation + Delta-G solvation = -93.128860 kcal Electronic energy + Delta-G solvation = -29356.305498 eV Core-core repulsion = 25112.605980 eV Total energy + Delta-G solvation = -4243.699518 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.17669 -40.48744 -39.21420 -38.22815 -36.99599 -36.07030 -34.54699 -32.93701 -31.49359 -31.02742 -29.95598 -28.98834 -26.97828 -26.65627 -24.67171 -24.45297 -23.31571 -22.83590 -21.51669 -20.03149 -18.66395 -18.49078 -17.70230 -17.49548 -17.05767 -16.66150 -16.50139 -16.24539 -15.69140 -15.65226 -15.09176 -14.51126 -14.47521 -14.30200 -14.16899 -14.01573 -13.66167 -13.55843 -13.36821 -12.91471 -12.78935 -12.46944 -12.36606 -12.29474 -11.87143 -11.71823 -11.61927 -11.54971 -11.26940 -11.05286 -10.96572 -10.67994 -10.62503 -10.51172 -10.40983 -10.11855 -9.66020 -9.22281 -9.09995 -8.48187 -8.40978 -7.84385 -6.10136 -4.14099 -0.10677 0.64778 1.20857 1.91405 2.49612 2.74634 3.11698 3.27471 3.31834 3.33163 3.36403 3.76207 3.87042 3.98533 4.03465 4.31413 4.39342 4.47826 4.66788 4.73738 4.84163 4.97695 4.98812 5.05121 5.23293 5.24612 5.29810 5.36299 5.38529 5.45819 5.62974 5.72962 5.78508 5.85620 5.91675 5.99412 6.09839 6.22824 6.44483 6.81188 6.85050 6.87364 7.02578 7.17712 7.34176 7.41035 7.85455 8.15414 8.20964 8.76411 8.92070 9.50191 10.98044 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018380 B = 0.002189 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.022572 B =12787.477483 C =13562.988751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.131 3.869 3 C -0.159 4.159 4 N -0.587 5.587 5 C 0.248 3.752 6 C -0.523 4.523 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.506 3.494 15 O -0.514 6.514 16 C 0.036 3.964 17 O -0.274 6.274 18 C 0.199 3.801 19 C -0.230 4.230 20 C -0.009 4.009 21 C -0.209 4.209 22 C 0.017 3.983 23 C -0.266 4.266 24 C 0.510 3.490 25 O -0.469 6.469 26 O -0.269 6.269 27 C 0.190 3.810 28 C -0.177 4.177 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.084 0.916 36 H 0.039 0.961 37 H 0.043 0.957 38 H 0.264 0.736 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.152 0.848 44 H 0.162 0.838 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.827 -6.632 -23.764 24.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.027 3.973 3 C -0.216 4.216 4 N -0.321 5.321 5 C 0.129 3.871 6 C -0.562 4.562 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.723 3.277 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.290 3.710 15 O -0.390 6.390 16 C -0.042 4.042 17 O -0.184 6.184 18 C 0.151 3.849 19 C -0.249 4.249 20 C -0.027 4.027 21 C -0.210 4.210 22 C -0.001 4.001 23 C -0.285 4.285 24 C 0.360 3.640 25 O -0.357 6.357 26 O -0.180 6.180 27 C 0.145 3.855 28 C -0.196 4.196 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.161 0.839 42 H 0.161 0.839 43 H 0.170 0.830 44 H 0.179 0.821 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.375 -7.496 -22.582 23.834 hybrid contribution 0.559 0.984 -0.010 1.132 sum 1.934 -6.512 -22.592 23.591 Atomic orbital electron populations 1.22173 0.95163 1.01985 1.02809 1.21052 0.94531 0.94430 0.87302 1.22157 1.01439 0.95389 1.02660 1.48305 1.48855 1.25760 1.09204 1.19311 0.96094 0.95104 0.76546 1.21359 1.08955 1.23624 1.02285 0.92368 1.24920 0.95750 0.97113 0.96282 1.69914 1.29433 1.43197 1.10724 0.86594 0.82045 0.81188 0.77823 1.20249 1.21208 1.20186 1.19602 0.80481 0.81858 0.89017 1.90748 1.52034 1.57404 1.38768 1.22897 0.95049 0.86859 0.99394 1.86217 1.63654 1.41165 1.27346 1.18880 0.90141 0.90327 0.85566 1.21138 1.07667 1.04432 0.91616 1.20646 0.91880 0.91453 0.98723 1.19008 1.08483 1.01531 0.91991 1.22787 0.88822 0.91018 0.97501 1.22478 1.06787 1.01471 0.97773 1.19242 0.79082 0.82930 0.82789 1.90987 1.35223 1.23231 1.86261 1.83564 1.57662 1.37468 1.39350 1.18521 0.89467 0.84279 0.93218 1.19511 1.04486 0.97491 0.98095 0.90994 0.92052 0.92797 0.91267 0.92638 0.93047 0.89746 0.94364 0.93864 0.92624 0.88925 0.89065 0.83943 0.83900 0.83032 0.82080 0.82712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.17 37.16 0.34 -1.68 16 2 C 0.13 1.81 3.17 -67.93 -0.22 1.59 16 3 C -0.16 -2.27 8.47 37.16 0.31 -1.95 16 4 N -0.59 -11.14 2.39 -167.47 -0.40 -11.54 16 5 C 0.25 5.99 4.59 -5.19 -0.02 5.97 16 6 C -0.52 -13.83 7.83 -34.44 -0.27 -14.10 16 7 H 0.06 1.53 7.63 -52.48 -0.40 1.13 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -25.56 13.29 55.43 0.74 -24.82 16 10 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.51 9.76 7.75 -10.98 -0.09 9.67 16 15 O -0.51 -12.69 16.08 -14.35 -0.23 -12.92 16 16 C 0.04 0.47 3.52 36.01 0.13 0.60 16 17 O -0.27 -4.00 9.65 -38.86 -0.38 -4.37 16 18 C 0.20 2.27 6.69 -39.06 -0.26 2.01 16 19 C -0.23 -1.84 8.96 -39.80 -0.36 -2.20 16 20 C -0.01 -0.06 9.78 -39.58 -0.39 -0.44 16 21 C -0.21 -1.69 5.87 -105.01 -0.62 -2.31 16 22 C 0.02 0.10 10.12 -37.14 -0.38 -0.28 16 23 C -0.27 -2.07 9.93 -39.39 -0.39 -2.46 16 24 C 0.51 6.12 7.89 31.78 0.25 6.37 16 25 O -0.47 -7.12 17.91 -19.60 -0.35 -7.47 16 26 O -0.27 -3.38 9.82 -20.82 -0.20 -3.58 16 27 C 0.19 2.07 6.76 -38.48 -0.26 1.81 16 28 C -0.18 -2.05 9.94 -39.31 -0.39 -2.44 16 29 H 0.07 1.06 6.66 -51.93 -0.35 0.71 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.70 5.77 -51.93 -0.30 0.40 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 1.48 6.92 -51.93 -0.36 1.13 16 36 H 0.04 0.93 6.43 -51.93 -0.33 0.59 16 37 H 0.04 1.21 7.42 -51.93 -0.39 0.83 16 38 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.09 0.96 7.28 -51.93 -0.38 0.58 16 40 H 0.09 0.88 7.30 -51.93 -0.38 0.50 16 41 H 0.14 0.83 6.24 -52.49 -0.33 0.50 16 42 H 0.14 0.40 8.06 -52.49 -0.42 -0.03 16 43 H 0.15 0.29 8.06 -52.48 -0.42 -0.13 16 44 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 380.64 15.07 5.74 5.74 Total: -1.00 -35.14 380.64 -8.53 -43.67 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -5.73 Total: -2.56 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -2.70 Total: 1.74 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.34 Total: -36.37 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -1.16 Total: -28.35 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.14 -8.53 -43.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053185940.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.458 kcal (2) G-P(sol) polarization free energy of solvation -35.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds