Wall clock time and date at job start Wed Apr 1 2020 02:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46845 * 2 1 4 4 N 1.46491 * 109.47177 * 119.99718 * 2 1 3 5 5 C 1.46500 * 120.00376 * 300.00317 * 4 2 1 6 6 C 1.50699 * 109.47270 * 269.99825 * 5 4 2 7 7 H 1.08004 * 119.99749 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00340 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99808 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00490 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46783 * 59.99750 * 10 8 6 12 12 H 1.48500 * 109.47367 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47142 * 300.00362 * 10 8 6 14 14 C 1.34786 * 120.00089 * 120.00069 * 4 2 1 15 15 O 1.21276 * 120.00302 * 179.97438 * 14 4 2 16 16 C 1.50699 * 119.99675 * 0.02562 * 14 4 2 17 17 O 1.42900 * 109.47013 * 179.97438 * 16 14 4 18 18 C 1.35746 * 116.99632 * 179.97438 * 17 16 14 19 19 C 1.39367 * 119.73328 * 0.25591 * 18 17 16 20 20 C 1.36465 * 120.42917 * 180.25208 * 19 18 17 21 21 C 1.39959 * 119.79316 * 359.75145 * 20 19 18 22 22 C 1.46440 * 120.98231 * 180.02562 * 21 20 19 23 23 C 1.35847 * 118.19500 * 179.97438 * 22 21 20 24 24 C 1.41002 * 119.82168 * 359.97438 * 23 22 21 25 25 O 1.21793 * 119.15287 * 179.97438 * 24 23 22 26 26 O 1.34221 * 121.69342 * 0.02562 * 24 23 22 27 27 C 1.35034 * 121.46331 * 0.02562 * 26 24 23 28 28 C 1.38519 * 119.72157 * 179.97438 * 18 17 16 29 29 H 1.09000 * 109.46961 * 300.00175 * 1 2 3 30 30 H 1.09001 * 109.47022 * 60.00013 * 1 2 3 31 31 H 1.08996 * 109.46711 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47414 * 240.00107 * 2 1 3 33 33 H 1.09001 * 109.47364 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47300 * 299.99817 * 3 2 1 35 35 H 1.09000 * 109.47484 * 60.00145 * 3 2 1 36 36 H 1.09002 * 109.47073 * 29.99763 * 5 4 2 37 37 H 1.09000 * 109.47445 * 150.00007 * 5 4 2 38 38 H 0.97008 * 120.00054 * 179.97438 * 9 8 6 39 39 H 1.08998 * 109.47098 * 59.99559 * 16 14 4 40 40 H 1.09004 * 109.47169 * 299.99981 * 16 14 4 41 41 H 1.08002 * 119.78157 * 359.97438 * 19 18 17 42 42 H 1.08001 * 120.10019 * 179.76482 * 20 19 18 43 43 H 1.08005 * 120.90070 * 359.97438 * 22 21 20 44 44 H 1.07998 * 120.08744 * 179.97438 * 23 22 21 45 45 H 1.08002 * 120.11090 * 0.03219 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1961 5 6 1.6644 -0.1900 2.5267 6 6 2.7031 0.8019 2.9830 7 1 3.5431 1.0358 2.3457 8 6 2.5811 1.4108 4.2140 9 7 1.5585 1.1257 4.9902 10 14 3.8682 2.6409 4.7793 11 1 3.9233 3.7748 3.8219 12 1 3.5095 3.1481 6.1281 13 1 5.1954 1.9773 4.8373 14 6 2.7933 -1.7864 1.0725 15 8 3.1979 -2.3578 2.0627 16 6 3.1578 -2.3009 -0.2962 17 8 3.9797 -3.4625 -0.1651 18 6 4.3981 -4.0541 -1.3130 19 6 4.0243 -3.5169 -2.5434 20 6 4.4325 -4.1031 -3.7062 21 6 5.2361 -5.2482 -3.6629 22 6 5.6895 -5.8980 -4.8945 23 6 6.4679 -7.0061 -4.7865 24 6 6.8162 -7.4968 -3.5113 25 8 7.5143 -8.4914 -3.4287 26 8 6.3974 -6.8965 -2.3862 27 6 5.6208 -5.7925 -2.4235 28 6 5.1979 -5.1834 -1.2516 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 0.6904 0.2974 2.4843 37 1 1.6238 -1.0225 3.2291 38 1 1.4728 1.5538 5.8564 39 1 3.7029 -1.5300 -0.8408 40 1 2.2496 -2.5577 -0.8416 41 1 3.4038 -2.6336 -2.5769 42 1 4.1366 -3.6846 -4.6568 43 1 5.4125 -5.5068 -5.8623 44 1 6.8190 -7.5098 -5.6750 45 1 5.4867 -5.5914 -0.2942 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053185940.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:51 Heat of formation + Delta-G solvation = -115.025019 kcal Electronic energy + Delta-G solvation = -29357.254987 eV Core-core repulsion = 25112.605980 eV Total energy + Delta-G solvation = -4244.649006 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.97077 -41.51383 -40.46291 -39.20612 -37.87186 -37.47665 -35.21368 -34.93150 -32.45772 -32.20537 -31.00645 -30.09793 -28.38060 -27.87665 -25.43265 -25.38096 -24.56165 -23.96585 -22.76401 -20.90615 -19.81421 -19.26739 -18.62977 -18.60269 -18.53335 -17.94053 -17.57776 -17.38029 -16.98025 -16.54237 -16.32507 -15.92302 -15.62305 -15.05442 -15.00888 -14.84056 -14.75869 -14.59540 -14.54932 -14.24584 -13.89704 -13.81561 -13.33914 -13.28529 -13.18664 -12.92519 -12.81365 -12.72739 -12.54161 -12.45940 -12.28983 -12.20292 -12.08634 -11.66744 -11.52829 -11.44870 -11.07995 -10.64272 -10.60200 -9.94441 -9.48832 -9.13624 -8.19859 -6.31200 -0.73689 -0.05530 0.52826 1.08318 1.36069 1.40455 1.46532 1.66941 1.74976 1.77947 2.37708 2.63046 2.65301 3.10692 3.15810 3.37623 3.48440 3.50169 3.70968 3.91068 3.95434 4.05191 4.08425 4.17583 4.32364 4.41891 4.44059 4.62343 4.69284 4.76178 4.85309 4.92682 5.02755 5.06931 5.10293 5.13511 5.14908 5.17609 5.23780 5.36317 5.47586 5.60758 5.66430 5.84222 6.06711 6.09665 6.14698 6.37387 6.70201 6.78338 7.28239 7.43054 8.87416 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018380 B = 0.002189 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.022572 B =12787.477483 C =13562.988751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.122 3.878 3 C -0.155 4.155 4 N -0.590 5.590 5 C 0.264 3.736 6 C -0.526 4.526 7 H 0.056 0.944 8 C 0.006 3.994 9 N -0.930 5.930 10 Si 0.959 3.041 11 H -0.257 1.257 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.492 3.508 15 O -0.588 6.588 16 C 0.049 3.951 17 O -0.315 6.315 18 C 0.182 3.818 19 C -0.222 4.222 20 C 0.016 3.984 21 C -0.209 4.209 22 C 0.055 3.945 23 C -0.283 4.283 24 C 0.498 3.502 25 O -0.524 6.524 26 O -0.298 6.298 27 C 0.166 3.834 28 C -0.206 4.206 29 H 0.035 0.965 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.126 0.874 33 H 0.046 0.954 34 H 0.095 0.905 35 H 0.040 0.960 36 H 0.033 0.967 37 H -0.010 1.010 38 H 0.265 0.735 39 H 0.132 0.868 40 H 0.138 0.862 41 H 0.179 0.821 42 H 0.201 0.799 43 H 0.212 0.788 44 H 0.184 0.816 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.013 -4.214 -29.853 30.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.020 3.980 3 C -0.213 4.213 4 N -0.322 5.322 5 C 0.143 3.857 6 C -0.564 4.564 7 H 0.075 0.925 8 C -0.193 4.193 9 N -0.570 5.570 10 Si 0.784 3.216 11 H -0.181 1.181 12 H -0.208 1.208 13 H -0.208 1.208 14 C 0.279 3.721 15 O -0.469 6.469 16 C -0.028 4.028 17 O -0.227 6.227 18 C 0.135 3.865 19 C -0.240 4.240 20 C -0.001 4.001 21 C -0.210 4.210 22 C 0.038 3.962 23 C -0.302 4.302 24 C 0.352 3.648 25 O -0.417 6.417 26 O -0.210 6.210 27 C 0.121 3.879 28 C -0.225 4.225 29 H 0.054 0.946 30 H 0.120 0.880 31 H 0.078 0.922 32 H 0.144 0.856 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.008 0.992 38 H 0.073 0.927 39 H 0.149 0.851 40 H 0.156 0.844 41 H 0.196 0.804 42 H 0.218 0.782 43 H 0.229 0.771 44 H 0.201 0.799 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.507 -5.036 -28.738 29.180 hybrid contribution 0.758 0.243 1.866 2.029 sum 1.265 -4.793 -26.872 27.325 Atomic orbital electron populations 1.22156 0.94071 1.02485 1.03017 1.21570 0.95495 0.94261 0.86674 1.22116 1.00839 0.95703 1.02673 1.48316 1.48751 1.26187 1.08954 1.18684 0.95511 0.92563 0.78933 1.21629 1.09011 1.23468 1.02317 0.92533 1.25790 0.97736 0.99169 0.96610 1.70042 1.31303 1.44566 1.11106 0.85599 0.78874 0.79345 0.77800 1.18148 1.20849 1.20786 1.20831 0.79022 0.80976 0.91234 1.90710 1.54666 1.59518 1.41982 1.22871 0.97506 0.87636 0.94759 1.86151 1.64671 1.42058 1.29837 1.19034 0.90904 0.90387 0.86158 1.21541 1.07203 1.05090 0.90161 1.21272 0.89049 0.89382 1.00424 1.19458 1.08069 1.02055 0.91432 1.23336 0.85542 0.88705 0.98650 1.22552 1.08667 1.03147 0.95855 1.20054 0.78391 0.82422 0.83945 1.90940 1.38072 1.25719 1.86928 1.83465 1.58227 1.38487 1.40831 1.18781 0.90282 0.84293 0.94540 1.19499 1.06306 0.98946 0.97792 0.94580 0.87980 0.92193 0.85634 0.93509 0.88678 0.94042 0.94959 0.99238 0.92658 0.85074 0.84416 0.80366 0.78168 0.77122 0.79895 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 9.17 71.98 0.66 -2.82 16 2 C 0.12 2.95 3.17 44.99 0.14 3.09 16 3 C -0.16 -4.00 8.47 71.98 0.61 -3.39 16 4 N -0.59 -22.34 2.39 -802.15 -1.91 -24.26 16 5 C 0.26 13.49 4.59 85.63 0.39 13.89 16 6 C -0.53 -28.84 7.83 25.60 0.20 -28.64 16 7 H 0.06 3.04 7.63 -2.91 -0.02 3.02 16 8 C 0.01 0.31 5.46 84.65 0.46 0.77 16 9 N -0.93 -55.55 13.29 21.45 0.28 -55.26 16 10 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 11 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 14 C 0.49 19.05 7.75 87.66 0.68 19.72 16 15 O -0.59 -30.95 16.08 16.02 0.26 -30.69 16 16 C 0.05 1.12 3.52 71.24 0.25 1.37 16 17 O -0.32 -9.04 9.65 -71.68 -0.69 -9.74 16 18 C 0.18 3.86 6.69 22.61 0.15 4.01 16 19 C -0.22 -2.27 8.96 22.13 0.20 -2.07 16 20 C 0.02 0.09 9.78 22.27 0.22 0.31 16 21 C -0.21 -2.48 5.87 -20.12 -0.12 -2.60 16 22 C 0.06 0.34 10.12 23.85 0.24 0.58 16 23 C -0.28 -3.73 9.93 22.39 0.22 -3.51 16 24 C 0.50 12.45 7.89 68.50 0.54 12.99 16 25 O -0.52 -17.20 17.91 18.97 0.34 -16.86 16 26 O -0.30 -8.07 9.82 14.59 0.14 -7.93 16 27 C 0.17 3.58 6.76 22.98 0.16 3.74 16 28 C -0.21 -5.06 9.94 22.44 0.22 -4.83 16 29 H 0.04 1.04 6.66 -2.39 -0.02 1.03 16 30 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.13 1.67 5.77 -2.39 -0.01 1.66 16 33 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.04 1.43 6.92 -2.39 -0.02 1.41 16 36 H 0.03 1.67 6.43 -2.39 -0.02 1.66 16 37 H -0.01 -0.64 7.42 -2.39 -0.02 -0.66 16 38 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16 39 H 0.13 1.96 7.28 -2.39 -0.02 1.94 16 40 H 0.14 1.82 7.30 -2.38 -0.02 1.80 16 41 H 0.18 0.53 6.24 -2.91 -0.02 0.51 16 42 H 0.20 -1.03 8.06 -2.91 -0.02 -1.05 16 43 H 0.21 -1.12 8.06 -2.91 -0.02 -1.15 16 44 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 45 H 0.13 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -92.50 380.64 6.70 -85.80 By element: Atomic # 1 Polarization: -0.99 SS G_CDS: 1.02 Total: 0.04 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 5.23 Total: 12.59 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -1.63 Total: -79.52 kcal Atomic # 8 Polarization: -65.27 SS G_CDS: 0.05 Total: -65.22 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -92.50 6.70 -85.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053185940.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.226 kcal (2) G-P(sol) polarization free energy of solvation -92.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds