Wall clock time and date at job start Wed Apr 1 2020 03:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47044 * 2 1 4 4 C 1.46501 * 120.00222 * 269.99905 * 3 2 1 5 5 C 1.50701 * 109.47058 * 270.00205 * 4 3 2 6 6 H 1.07991 * 120.00245 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99555 * 179.97438 * 5 4 3 8 8 N 1.31521 * 120.00276 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99853 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46963 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47041 * 120.00271 * 9 7 5 12 12 H 1.48495 * 109.47516 * 240.00113 * 9 7 5 13 13 C 1.34777 * 119.99643 * 90.00341 * 3 2 1 14 14 O 1.21285 * 120.00067 * 179.97438 * 13 3 2 15 15 C 1.50693 * 120.00342 * 359.97438 * 13 3 2 16 16 O 1.42903 * 109.47364 * 180.02562 * 15 13 3 17 17 C 1.34929 * 117.00228 * 180.02562 * 16 15 13 18 18 O 1.21655 * 119.99819 * 0.26806 * 17 16 15 19 19 C 1.41765 * 120.00199 * 179.97438 * 17 16 15 20 20 C 1.35537 * 120.03934 * 179.71794 * 19 17 16 21 21 C 1.46972 * 118.15146 * 182.41791 * 20 19 17 22 22 C 1.39524 * 121.43201 * 193.91643 * 21 20 19 23 23 C 1.37926 * 119.51925 * 178.13819 * 22 21 20 24 24 C 1.38578 * 120.35245 * 0.02562 * 23 22 21 25 25 C 1.38238 * 120.62826 * 0.56530 * 24 23 22 26 26 C 1.38381 * 119.85570 * 359.92921 * 25 24 23 27 27 O 1.35586 * 121.18311 * 178.72727 * 26 25 24 28 28 C 1.42698 * 117.59610 * 145.91873 * 27 26 25 29 29 H 1.08997 * 109.47415 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46847 * 299.99736 * 1 2 3 31 31 H 1.08997 * 109.47245 * 59.99507 * 1 2 3 32 32 H 1.08996 * 109.47114 * 240.00313 * 2 1 3 33 33 H 1.09002 * 109.47270 * 119.99997 * 2 1 3 34 34 H 1.08994 * 109.46678 * 30.00192 * 4 3 2 35 35 H 1.09002 * 109.47120 * 149.99762 * 4 3 2 36 36 H 0.97000 * 119.99987 * 179.97438 * 8 7 5 37 37 H 1.08999 * 109.47654 * 59.99954 * 15 13 3 38 38 H 1.09000 * 109.47548 * 299.99900 * 15 13 3 39 39 H 1.07994 * 120.93203 * 2.64344 * 20 19 17 40 40 H 1.07999 * 120.23811 * 358.15795 * 22 21 20 41 41 H 1.07997 * 119.82707 * 179.97438 * 23 22 21 42 42 H 1.08005 * 119.68852 * 180.54283 * 24 23 22 43 43 H 1.08000 * 120.07362 * 179.97438 * 25 24 23 44 44 H 1.09001 * 109.22978 * 286.67400 * 28 27 26 45 45 H 1.08998 * 109.19939 * 167.28152 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0962 7 6 4.1490 2.3897 -2.8779 8 7 3.3489 3.1259 -3.6180 9 14 5.9134 2.0968 -3.4168 10 1 6.6010 1.2416 -2.4164 11 1 5.9213 1.4173 -4.7373 12 1 6.6203 3.3982 -3.5257 13 6 2.2429 2.0165 1.1672 14 8 2.6476 3.1598 1.1673 15 6 1.9913 1.3063 2.4723 16 8 2.3004 2.1819 3.5585 17 6 2.1286 1.6956 4.8053 18 8 1.7316 0.5568 4.9647 19 6 2.4165 2.5097 5.9296 20 6 2.2387 2.0240 7.1824 21 6 2.4983 2.9211 8.3173 22 6 2.6188 2.4322 9.6185 23 6 2.9008 3.3046 10.6489 24 6 3.0634 4.6574 10.3963 25 6 2.9343 5.1548 9.1130 26 6 2.6414 4.2965 8.0677 27 8 2.4837 4.7587 6.8029 28 6 2.9141 3.9178 5.7333 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6878 -2.0283 35 1 2.0954 3.1411 -1.1383 36 1 3.6750 3.5164 -4.4439 37 1 2.6211 0.4186 2.5303 38 1 0.9432 1.0125 2.5300 39 1 1.9188 1.0050 7.3425 40 1 2.4924 1.3782 9.8174 41 1 2.9947 2.9316 11.6580 42 1 3.2927 5.3297 11.2099 43 1 3.0624 6.2108 8.9264 44 1 4.0035 3.9117 5.6975 45 1 2.5262 4.3079 4.7924 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061078767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:23 Heat of formation + Delta-G solvation = -106.948977 kcal Electronic energy + Delta-G solvation = -29152.861950 eV Core-core repulsion = 24908.563147 eV Total energy + Delta-G solvation = -4244.298803 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.36060 -40.47746 -38.99237 -37.86591 -36.69162 -35.32475 -34.60994 -32.85640 -31.41468 -30.83453 -30.18963 -29.14541 -26.73649 -26.30417 -25.01810 -23.10498 -23.04456 -22.69954 -21.78101 -19.36914 -18.74738 -18.53263 -17.58947 -17.21310 -16.87284 -16.42255 -16.36421 -16.13352 -15.80505 -15.31954 -15.22661 -14.76145 -14.54809 -14.28582 -14.04108 -13.82331 -13.52052 -13.39491 -13.10733 -13.09365 -12.70137 -12.45445 -12.16306 -12.08953 -12.03953 -11.79756 -11.64707 -11.25617 -11.16858 -10.94958 -10.88065 -10.67976 -10.62303 -10.58432 -10.52701 -10.16273 -9.65898 -9.14166 -9.01772 -8.46458 -8.41353 -7.77013 -6.07299 -4.12122 -0.12581 0.91992 1.34776 2.48871 2.61108 3.01058 3.23157 3.28563 3.35554 3.36516 3.40751 3.84637 4.11017 4.19037 4.30064 4.42773 4.55016 4.69358 4.77374 4.85491 4.92077 5.07187 5.08589 5.15401 5.19704 5.27433 5.31101 5.35760 5.42172 5.52907 5.57534 5.69143 5.71986 5.85840 5.97826 6.00372 6.01285 6.17875 6.25174 6.28115 6.43701 6.97437 6.98051 7.38086 7.45007 7.58969 7.88883 8.18796 8.27808 8.82696 8.97638 9.52994 11.00875 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016838 B = 0.002160 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.466136 B =12960.580223 C =13910.872024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.591 5.591 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.049 3.951 16 O -0.322 6.322 17 C 0.515 3.485 18 O -0.512 6.512 19 C -0.217 4.217 20 C 0.024 3.976 21 C -0.159 4.159 22 C -0.053 4.053 23 C -0.156 4.156 24 C -0.068 4.068 25 C -0.149 4.149 26 C 0.150 3.850 27 O -0.305 6.305 28 C 0.112 3.888 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.036 0.964 35 H 0.045 0.955 36 H 0.263 0.737 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.153 0.847 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.133 0.867 43 H 0.138 0.862 44 H 0.080 0.920 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.800 -2.856 26.801 27.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.292 3.708 14 O -0.395 6.395 15 C -0.029 4.029 16 O -0.237 6.237 17 C 0.362 3.638 18 O -0.404 6.404 19 C -0.219 4.219 20 C 0.005 3.995 21 C -0.160 4.160 22 C -0.071 4.071 23 C -0.174 4.174 24 C -0.086 4.086 25 C -0.168 4.168 26 C 0.105 3.895 27 O -0.219 6.219 28 C 0.037 3.963 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.170 0.830 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.151 0.849 43 H 0.156 0.844 44 H 0.098 0.902 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.776 -2.272 26.512 26.876 hybrid contribution 0.878 -0.711 -0.569 1.266 sum -2.897 -2.983 25.943 26.274 Atomic orbital electron populations 1.22232 0.96524 1.01697 1.02422 1.21510 0.93762 0.83942 1.03036 1.48207 1.63748 1.13410 1.07135 1.19341 0.96499 0.93721 0.77555 1.21457 0.96844 1.32000 1.06312 0.92341 1.24941 0.97935 0.94887 0.96372 1.69941 1.35620 1.33378 1.14336 0.86428 0.84531 0.78080 0.78294 1.19805 1.20960 1.20832 1.19694 0.79723 0.87128 0.84263 1.90713 1.44565 1.17488 1.86732 1.22607 1.02725 0.92916 0.84606 1.86219 1.78600 1.44760 1.14100 1.19401 0.75187 0.85732 0.83501 1.90883 1.43410 1.19193 1.86873 1.20627 1.11034 0.98163 0.92063 1.22455 0.88537 0.98533 0.89948 1.19086 1.09710 0.92874 0.94354 1.21149 0.95242 1.00178 0.90573 1.21096 1.03502 0.93426 0.99407 1.21218 0.95856 0.95606 0.95913 1.20653 1.04203 1.00508 0.91431 1.19240 0.93409 0.91451 0.85443 1.85998 1.79356 1.44560 1.11937 1.21732 0.99982 0.85476 0.89077 0.91896 0.93137 0.91774 0.89410 0.91738 0.94615 0.93677 0.92716 0.88808 0.88898 0.82975 0.84828 0.85216 0.84919 0.84414 0.90198 0.84713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 37.15 0.38 -1.88 16 2 C 0.10 1.60 5.93 -4.04 -0.02 1.57 16 3 N -0.59 -12.34 2.46 -175.06 -0.43 -12.77 16 4 C 0.25 6.36 5.16 -5.19 -0.03 6.34 16 5 C -0.53 -14.79 9.39 -34.44 -0.32 -15.12 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 9 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.51 10.66 7.75 -10.99 -0.09 10.58 16 14 O -0.52 -13.19 16.08 -14.36 -0.23 -13.42 16 15 C 0.05 0.80 4.41 36.00 0.16 0.96 16 16 O -0.32 -5.32 8.73 -47.88 -0.42 -5.74 16 17 C 0.51 7.50 7.67 32.08 0.25 7.75 16 18 O -0.51 -8.00 15.92 -19.38 -0.31 -8.31 16 19 C -0.22 -2.68 5.82 -104.28 -0.61 -3.29 16 20 C 0.02 0.25 9.55 -37.01 -0.35 -0.11 16 21 C -0.16 -1.54 5.82 -105.02 -0.61 -2.15 16 22 C -0.05 -0.38 9.86 -39.22 -0.39 -0.77 16 23 C -0.16 -0.95 10.03 -39.57 -0.40 -1.35 16 24 C -0.07 -0.43 10.02 -39.46 -0.40 -0.82 16 25 C -0.15 -1.23 10.01 -39.53 -0.40 -1.63 16 26 C 0.15 1.58 6.47 -38.67 -0.25 1.33 16 27 O -0.31 -3.66 10.38 -18.45 -0.19 -3.85 16 28 C 0.11 1.32 6.74 35.97 0.24 1.56 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.64 7.22 -51.93 -0.37 0.27 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 33 H 0.06 0.85 6.44 -51.93 -0.33 0.52 16 34 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 35 H 0.05 1.31 7.42 -51.93 -0.39 0.93 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.09 1.38 7.38 -51.93 -0.38 1.00 16 38 H 0.09 1.32 7.17 -51.93 -0.37 0.95 16 39 H 0.15 1.39 7.52 -52.49 -0.39 0.99 16 40 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 42 H 0.13 0.48 8.06 -52.48 -0.42 0.05 16 43 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 44 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.14 1.66 7.53 -51.93 -0.39 1.27 16 LS Contribution 387.65 15.07 5.84 5.84 Total: -1.00 -34.78 387.65 -8.93 -43.71 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.98 Total: -1.20 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -2.93 Total: 4.60 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.31 Total: -38.39 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -1.15 Total: -31.32 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.78 -8.93 -43.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061078767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.240 kcal (2) G-P(sol) polarization free energy of solvation -34.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds