Wall clock time and date at job start Wed Apr 1 2020 03:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47044 * 2 1 4 4 C 1.46501 * 120.00222 * 269.99905 * 3 2 1 5 5 C 1.50701 * 109.47058 * 270.00205 * 4 3 2 6 6 H 1.07991 * 120.00245 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99555 * 179.97438 * 5 4 3 8 8 N 1.31521 * 120.00276 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99853 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46963 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47041 * 120.00271 * 9 7 5 12 12 H 1.48495 * 109.47516 * 240.00113 * 9 7 5 13 13 C 1.34777 * 119.99643 * 90.00341 * 3 2 1 14 14 O 1.21285 * 120.00067 * 179.97438 * 13 3 2 15 15 C 1.50693 * 120.00342 * 359.97438 * 13 3 2 16 16 O 1.42903 * 109.47364 * 180.02562 * 15 13 3 17 17 C 1.34929 * 117.00228 * 180.02562 * 16 15 13 18 18 O 1.21655 * 119.99819 * 0.26806 * 17 16 15 19 19 C 1.41765 * 120.00199 * 179.97438 * 17 16 15 20 20 C 1.35537 * 120.03934 * 179.71794 * 19 17 16 21 21 C 1.46972 * 118.15146 * 182.41791 * 20 19 17 22 22 C 1.39524 * 121.43201 * 193.91643 * 21 20 19 23 23 C 1.37926 * 119.51925 * 178.13819 * 22 21 20 24 24 C 1.38578 * 120.35245 * 0.02562 * 23 22 21 25 25 C 1.38238 * 120.62826 * 0.56530 * 24 23 22 26 26 C 1.38381 * 119.85570 * 359.92921 * 25 24 23 27 27 O 1.35586 * 121.18311 * 178.72727 * 26 25 24 28 28 C 1.42698 * 117.59610 * 145.91873 * 27 26 25 29 29 H 1.08997 * 109.47415 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46847 * 299.99736 * 1 2 3 31 31 H 1.08997 * 109.47245 * 59.99507 * 1 2 3 32 32 H 1.08996 * 109.47114 * 240.00313 * 2 1 3 33 33 H 1.09002 * 109.47270 * 119.99997 * 2 1 3 34 34 H 1.08994 * 109.46678 * 30.00192 * 4 3 2 35 35 H 1.09002 * 109.47120 * 149.99762 * 4 3 2 36 36 H 0.97000 * 119.99987 * 179.97438 * 8 7 5 37 37 H 1.08999 * 109.47654 * 59.99954 * 15 13 3 38 38 H 1.09000 * 109.47548 * 299.99900 * 15 13 3 39 39 H 1.07994 * 120.93203 * 2.64344 * 20 19 17 40 40 H 1.07999 * 120.23811 * 358.15795 * 22 21 20 41 41 H 1.07997 * 119.82707 * 179.97438 * 23 22 21 42 42 H 1.08005 * 119.68852 * 180.54283 * 24 23 22 43 43 H 1.08000 * 120.07362 * 179.97438 * 25 24 23 44 44 H 1.09001 * 109.22978 * 286.67400 * 28 27 26 45 45 H 1.08998 * 109.19939 * 167.28152 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0962 7 6 4.1490 2.3897 -2.8779 8 7 3.3489 3.1259 -3.6180 9 14 5.9134 2.0968 -3.4168 10 1 6.6010 1.2416 -2.4164 11 1 5.9213 1.4173 -4.7373 12 1 6.6203 3.3982 -3.5257 13 6 2.2429 2.0165 1.1672 14 8 2.6476 3.1598 1.1673 15 6 1.9913 1.3063 2.4723 16 8 2.3004 2.1819 3.5585 17 6 2.1286 1.6956 4.8053 18 8 1.7316 0.5568 4.9647 19 6 2.4165 2.5097 5.9296 20 6 2.2387 2.0240 7.1824 21 6 2.4983 2.9211 8.3173 22 6 2.6188 2.4322 9.6185 23 6 2.9008 3.3046 10.6489 24 6 3.0634 4.6574 10.3963 25 6 2.9343 5.1548 9.1130 26 6 2.6414 4.2965 8.0677 27 8 2.4837 4.7587 6.8029 28 6 2.9141 3.9178 5.7333 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6878 -2.0283 35 1 2.0954 3.1411 -1.1383 36 1 3.6750 3.5164 -4.4439 37 1 2.6211 0.4186 2.5303 38 1 0.9432 1.0125 2.5300 39 1 1.9188 1.0050 7.3425 40 1 2.4924 1.3782 9.8174 41 1 2.9947 2.9316 11.6580 42 1 3.2927 5.3297 11.2099 43 1 3.0624 6.2108 8.9264 44 1 4.0035 3.9117 5.6975 45 1 2.5262 4.3079 4.7924 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061078767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:22 Heat of formation + Delta-G solvation = -126.827307 kcal Electronic energy + Delta-G solvation = -29153.723939 eV Core-core repulsion = 24908.563147 eV Total energy + Delta-G solvation = -4245.160792 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.31284 -41.49393 -40.55713 -38.53604 -37.91969 -37.00058 -35.46113 -34.94529 -32.19707 -31.71578 -31.44274 -30.57589 -28.49575 -27.13521 -26.05296 -24.81689 -24.13895 -23.66205 -22.75035 -20.49291 -20.10367 -19.36431 -18.68712 -18.52451 -18.32042 -17.97483 -17.64988 -17.26977 -16.93084 -16.61417 -16.22047 -16.06199 -15.82426 -15.37739 -14.90889 -14.84519 -14.72651 -14.59210 -14.38955 -14.03620 -13.97098 -13.77952 -13.62343 -13.30226 -13.19093 -13.07819 -12.73272 -12.68783 -12.52339 -12.51296 -12.24318 -12.07200 -12.05361 -11.79446 -11.70018 -11.55763 -11.31914 -10.74470 -10.66058 -9.75636 -9.55724 -9.14767 -8.24275 -6.38640 -0.92223 0.33255 0.60485 1.26778 1.36099 1.38639 1.50192 1.59026 1.66668 2.21113 2.32577 2.45490 2.75290 3.05769 3.27802 3.38024 3.45053 3.57343 3.81352 3.89602 3.95230 4.03633 4.14220 4.23680 4.25895 4.34574 4.37058 4.39269 4.57861 4.59282 4.72296 4.82339 4.88846 4.93467 4.97887 5.01778 5.12867 5.20018 5.28089 5.35050 5.37815 5.46972 5.53374 5.72272 5.78575 6.03075 6.23601 6.43022 6.61273 6.70786 7.19772 7.35400 8.83379 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016838 B = 0.002160 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.466136 B =12960.580223 C =13910.872024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.262 3.738 5 C -0.543 4.543 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.927 5.927 9 Si 0.969 3.031 10 H -0.267 1.267 11 H -0.269 1.269 12 H -0.282 1.282 13 C 0.500 3.500 14 O -0.577 6.577 15 C 0.062 3.938 16 O -0.342 6.342 17 C 0.521 3.479 18 O -0.526 6.526 19 C -0.253 4.253 20 C 0.055 3.945 21 C -0.185 4.185 22 C -0.048 4.048 23 C -0.152 4.152 24 C -0.057 4.057 25 C -0.163 4.163 26 C 0.121 3.879 27 O -0.322 6.322 28 C 0.117 3.883 29 H 0.098 0.902 30 H 0.056 0.944 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.030 0.970 35 H 0.000 1.000 36 H 0.268 0.732 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.168 0.832 40 H 0.160 0.840 41 H 0.163 0.837 42 H 0.165 0.835 43 H 0.144 0.856 44 H 0.082 0.918 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.309 -4.958 30.118 30.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.192 4.192 8 N -0.567 5.567 9 Si 0.793 3.207 10 H -0.191 1.191 11 H -0.194 1.194 12 H -0.208 1.208 13 C 0.287 3.713 14 O -0.456 6.456 15 C -0.015 4.015 16 O -0.258 6.258 17 C 0.370 3.630 18 O -0.419 6.419 19 C -0.254 4.254 20 C 0.037 3.963 21 C -0.185 4.185 22 C -0.066 4.066 23 C -0.170 4.170 24 C -0.074 4.074 25 C -0.181 4.181 26 C 0.076 3.924 27 O -0.236 6.236 28 C 0.042 3.958 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.048 0.952 35 H 0.018 0.982 36 H 0.076 0.924 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.185 0.815 40 H 0.178 0.822 41 H 0.181 0.819 42 H 0.182 0.818 43 H 0.162 0.838 44 H 0.100 0.900 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.310 -4.424 29.848 30.356 hybrid contribution 0.688 -0.014 -1.364 1.528 sum -2.622 -4.438 28.484 28.947 Atomic orbital electron populations 1.22175 0.94354 1.03792 1.01804 1.21868 0.95538 0.80973 1.04426 1.48204 1.63558 1.15267 1.05667 1.18800 0.95632 0.91665 0.79745 1.21719 0.97782 1.32085 1.06559 0.92739 1.25863 1.02435 0.94470 0.96436 1.70056 1.37688 1.34130 1.14824 0.85353 0.78953 0.78000 0.78405 1.19141 1.19361 1.20790 1.20527 0.78366 0.86644 0.85802 1.90678 1.47113 1.20111 1.87733 1.22454 1.04661 0.92303 0.82084 1.86224 1.79183 1.45421 1.14940 1.19617 0.74623 0.85787 0.82991 1.90857 1.44631 1.19629 1.86790 1.20522 1.14514 0.98328 0.92062 1.22749 0.85081 0.99002 0.89507 1.19239 1.11661 0.92408 0.95230 1.21538 0.93674 1.01821 0.89538 1.21552 1.01734 0.93102 1.00624 1.21665 0.93621 0.96491 0.95674 1.20931 1.04443 1.00831 0.91912 1.19654 0.95009 0.92623 0.85110 1.85951 1.79916 1.44954 1.12827 1.21533 0.99932 0.85578 0.88717 0.88348 0.92511 0.93683 0.89940 0.88399 0.95214 0.98237 0.92357 0.86585 0.86302 0.81456 0.82250 0.81930 0.81763 0.83809 0.90044 0.86491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 10.24 71.98 0.74 -3.33 16 2 C 0.09 2.85 5.93 86.38 0.51 3.36 16 3 N -0.59 -25.45 2.46 -826.17 -2.03 -27.47 16 4 C 0.26 14.20 5.16 85.63 0.44 14.64 16 5 C -0.54 -31.39 9.39 25.60 0.24 -31.15 16 6 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 7 C 0.01 0.41 5.46 84.65 0.46 0.87 16 8 N -0.93 -56.24 13.29 21.45 0.28 -55.95 16 9 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 13 C 0.50 21.67 7.75 87.65 0.68 22.35 16 14 O -0.58 -31.13 16.08 15.99 0.26 -30.87 16 15 C 0.06 1.99 4.41 71.23 0.31 2.31 16 16 O -0.34 -11.59 8.73 -51.98 -0.45 -12.04 16 17 C 0.52 15.22 7.67 68.69 0.53 15.75 16 18 O -0.53 -15.85 15.92 19.33 0.31 -15.54 16 19 C -0.25 -6.35 5.82 -19.64 -0.11 -6.46 16 20 C 0.05 1.09 9.55 23.94 0.23 1.32 16 21 C -0.18 -3.31 5.82 -20.12 -0.12 -3.43 16 22 C -0.05 -0.53 9.86 22.51 0.22 -0.31 16 23 C -0.15 -1.22 10.03 22.28 0.22 -1.00 16 24 C -0.06 -0.52 10.02 22.35 0.22 -0.30 16 25 C -0.16 -2.47 10.01 22.30 0.22 -2.25 16 26 C 0.12 2.51 6.47 22.86 0.15 2.66 16 27 O -0.32 -8.16 10.38 -88.94 -0.92 -9.09 16 28 C 0.12 2.98 6.74 71.21 0.48 3.46 16 29 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.06 1.34 7.22 -2.38 -0.02 1.33 16 31 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 2.60 8.07 -2.39 -0.02 2.58 16 33 H 0.10 2.34 6.44 -2.39 -0.02 2.32 16 34 H 0.03 1.62 8.07 -2.39 -0.02 1.60 16 35 H 0.00 -0.03 7.42 -2.39 -0.02 -0.05 16 36 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 37 H 0.12 3.21 7.38 -2.39 -0.02 3.19 16 38 H 0.12 3.19 7.17 -2.39 -0.02 3.17 16 39 H 0.17 2.71 7.52 -2.91 -0.02 2.69 16 40 H 0.16 0.90 8.06 -2.91 -0.02 0.87 16 41 H 0.16 0.29 8.06 -2.91 -0.02 0.26 16 42 H 0.16 0.45 8.06 -2.91 -0.02 0.43 16 43 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 44 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.12 3.27 7.53 -2.39 -0.02 3.25 16 Total: -1.00 -80.14 387.65 5.91 -74.23 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 1.01 Total: 11.06 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 5.43 Total: 18.48 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -1.74 Total: -83.43 kcal Atomic # 8 Polarization: -66.72 SS G_CDS: -0.81 Total: -67.54 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -80.14 5.91 -74.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061078767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.598 kcal (2) G-P(sol) polarization free energy of solvation -80.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds