Wall clock time and date at job start Wed Apr 1 2020 03:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00484 * 2 1 4 4 H 1.09001 * 109.47255 * 30.00292 * 3 2 1 5 5 C 1.53006 * 109.47036 * 270.00415 * 3 2 1 6 6 C 1.50697 * 109.47590 * 150.00037 * 3 2 1 7 7 O 1.20827 * 119.99943 * 5.00142 * 6 3 2 8 8 O 1.34230 * 120.00241 * 185.00014 * 6 3 2 9 9 C 1.45196 * 116.99934 * 180.02562 * 8 6 3 10 10 C 1.50702 * 109.47502 * 179.97438 * 9 8 6 11 11 O 1.21410 * 119.99513 * 359.97438 * 10 9 8 12 12 C 1.41719 * 120.00493 * 179.97438 * 10 9 8 13 13 C 1.37858 * 126.91082 * 0.02562 * 12 10 9 14 14 N 1.34678 * 109.61921 * 180.02562 * 13 12 10 15 15 C 1.46503 * 124.64306 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.46792 * 265.02163 * 15 14 13 17 17 H 1.07998 * 120.00193 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99853 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99898 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99871 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47609 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47302 * 120.00335 * 20 18 16 23 23 H 1.48507 * 109.47402 * 240.00261 * 20 18 16 24 24 C 1.38018 * 110.71105 * 359.97438 * 14 13 12 25 25 C 1.39138 * 133.03824 * 179.97438 * 24 14 13 26 26 C 1.37776 * 119.94627 * 179.97438 * 25 24 14 27 27 C 1.38729 * 120.63811 * 0.02562 * 26 25 24 28 28 C 1.37800 * 120.26745 * 359.97438 * 27 26 25 29 29 C 1.39195 * 119.67156 * 359.64849 * 28 27 26 30 30 H 1.08994 * 109.47236 * 59.99272 * 1 2 3 31 31 H 1.08995 * 109.47348 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46884 * 300.00129 * 1 2 3 33 33 H 1.09001 * 109.47002 * 299.99477 * 5 3 2 34 34 H 1.08993 * 109.46955 * 59.99914 * 5 3 2 35 35 H 1.09000 * 109.47050 * 179.97438 * 5 3 2 36 36 H 1.09001 * 109.47383 * 299.99889 * 9 8 6 37 37 H 1.09000 * 109.47605 * 59.99861 * 9 8 6 38 38 H 1.08004 * 125.19199 * 359.97156 * 13 12 10 39 39 H 1.08998 * 109.47391 * 25.02157 * 15 14 13 40 40 H 1.08996 * 109.47027 * 145.02663 * 15 14 13 41 41 H 0.96998 * 120.00196 * 179.97438 * 19 18 16 42 42 H 1.07996 * 120.02652 * 0.02614 * 25 24 14 43 43 H 1.08004 * 119.68456 * 179.97438 * 26 25 24 44 44 H 1.07993 * 119.86682 * 179.97438 * 27 26 25 45 45 H 1.08003 * 120.16272 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5139 5 6 2.2177 1.7713 -1.4426 6 6 3.3387 1.2638 0.7104 7 8 3.7880 0.2084 1.0899 8 8 4.0227 2.3992 0.9215 9 6 5.2951 2.2837 1.6113 10 6 5.9140 3.6501 1.7563 11 8 5.3388 4.6263 1.3201 12 6 7.1672 3.7956 2.4017 13 6 7.9398 2.7918 2.9458 14 7 9.0621 3.3194 3.4712 15 6 10.1149 2.5457 4.1340 16 6 9.8801 2.5503 5.6226 17 1 9.0313 3.0765 6.0338 18 6 10.7483 1.8818 6.4595 19 7 11.7816 1.2406 5.9587 20 14 10.4569 1.8869 8.3046 21 1 9.2359 2.6748 8.6108 22 1 10.2790 0.4919 8.7815 23 1 11.6245 2.4987 8.9885 24 6 9.0844 4.6887 3.2998 25 6 9.9993 5.6753 3.6543 26 6 9.7453 6.9929 3.3422 27 6 8.5820 7.3501 2.6759 28 6 7.6639 6.3873 2.3165 29 6 7.9122 5.0515 2.6189 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.8829 1.0774 -1.9564 34 1 1.2569 1.8014 -1.9563 35 1 2.6607 2.7672 -1.4426 36 1 5.1351 1.8503 2.5986 37 1 5.9630 1.6419 1.0368 38 1 7.6838 1.7426 2.9507 39 1 10.0977 1.5196 3.7666 40 1 11.0851 2.9928 3.9179 41 1 12.3926 0.7706 6.5475 42 1 10.9082 5.4082 4.1728 43 1 10.4581 7.7554 3.6197 44 1 8.3953 8.3867 2.4378 45 1 6.7587 6.6673 1.7982 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062530991.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:51 Heat of formation + Delta-G solvation = -108.807866 kcal Electronic energy + Delta-G solvation = -29103.628984 eV Core-core repulsion = 24859.249574 eV Total energy + Delta-G solvation = -4244.379410 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.14579 -40.70411 -38.76928 -38.06275 -36.73664 -36.25329 -33.68260 -32.24883 -31.99722 -29.95919 -29.75496 -28.08734 -27.22808 -26.93026 -24.73475 -23.67597 -22.70524 -21.79938 -20.95307 -20.48602 -18.85069 -18.06459 -17.33869 -16.96778 -16.89408 -16.45632 -16.29928 -15.97693 -15.54851 -15.19629 -15.04109 -14.66841 -14.64252 -14.18318 -13.97442 -13.80565 -13.40065 -13.36400 -13.21611 -12.86602 -12.74668 -12.51452 -12.42119 -12.17724 -12.08464 -11.84038 -11.56671 -11.47907 -11.27865 -10.98984 -10.94254 -10.80571 -10.64694 -10.61609 -10.32625 -10.12577 -9.83037 -9.37362 -9.10960 -8.83288 -7.84493 -7.25953 -6.44382 -4.55131 1.21821 1.86593 2.01802 2.08024 2.25343 3.09310 3.18303 3.22129 3.43169 3.52470 3.55874 4.14372 4.17766 4.35290 4.46492 4.54689 4.64119 4.89462 4.89682 4.96744 5.02829 5.13725 5.17202 5.18793 5.25665 5.31281 5.32148 5.38327 5.44583 5.62437 5.75560 5.85765 5.98853 6.07069 6.16283 6.28848 6.44329 6.50780 6.57201 6.73262 6.84934 6.97548 7.07691 7.26085 7.46322 7.59630 7.63292 7.68895 7.73819 7.99817 8.52060 9.14216 10.62375 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010217 B = 0.002677 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.809138 B =10456.368051 C =12623.728193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.363 6.363 3 C 0.099 3.901 4 H 0.101 0.899 5 C -0.170 4.170 6 C 0.457 3.543 7 O -0.487 6.487 8 O -0.333 6.333 9 C 0.022 3.978 10 C 0.434 3.566 11 O -0.467 6.467 12 C -0.314 4.314 13 C 0.159 3.841 14 N -0.419 5.419 15 C 0.225 3.775 16 C -0.548 4.548 17 H 0.068 0.932 18 C 0.069 3.931 19 N -0.887 5.887 20 Si 0.906 3.094 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.279 1.279 24 C 0.084 3.916 25 C -0.098 4.098 26 C -0.121 4.121 27 C -0.140 4.140 28 C -0.084 4.084 29 C -0.054 4.054 30 H 0.047 0.953 31 H 0.093 0.907 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.176 0.824 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.270 0.730 42 H 0.126 0.874 43 H 0.121 0.879 44 H 0.118 0.882 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.049 2.955 -11.209 18.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.282 6.282 3 C 0.040 3.960 4 H 0.119 0.881 5 C -0.227 4.227 6 C 0.298 3.702 7 O -0.372 6.372 8 O -0.249 6.249 9 C -0.053 4.053 10 C 0.316 3.684 11 O -0.345 6.345 12 C -0.323 4.323 13 C 0.015 3.985 14 N -0.092 5.092 15 C 0.107 3.893 16 C -0.586 4.586 17 H 0.086 0.914 18 C -0.136 4.136 19 N -0.524 5.524 20 Si 0.733 3.267 21 H -0.194 1.194 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.020 4.020 25 C -0.118 4.118 26 C -0.140 4.140 27 C -0.159 4.159 28 C -0.102 4.102 29 C -0.058 4.058 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.193 0.807 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.144 0.856 43 H 0.139 0.861 44 H 0.136 0.864 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.583 2.702 -11.070 18.507 hybrid contribution 0.008 -0.328 1.299 1.340 sum -14.575 2.374 -9.771 17.707 Atomic orbital electron populations 1.22923 0.79823 1.03547 1.00403 1.88019 1.20289 1.24939 1.94947 1.21413 0.90610 0.87039 0.96953 0.88132 1.22228 1.03729 1.03087 0.93694 1.23432 0.86975 0.82271 0.77498 1.90703 1.68367 1.31427 1.46728 1.86529 1.33177 1.34755 1.70473 1.23548 0.82899 0.99944 0.98863 1.19505 0.84269 0.88150 0.76506 1.90520 1.61975 1.40759 1.41276 1.19253 1.00167 0.93166 1.19713 1.22611 0.85697 0.98642 0.91502 1.44657 1.17619 1.05608 1.41359 1.20001 0.84617 0.91459 0.93206 1.21317 1.12496 1.34857 0.89904 0.91400 1.24939 0.94425 0.94298 0.99905 1.69913 1.13883 1.32453 1.36159 0.86294 0.78620 0.78185 0.83638 1.19405 1.20495 1.20507 1.18321 0.97438 0.83965 1.02291 1.20214 0.98985 0.91191 1.01432 1.20728 0.97860 0.94923 1.00531 1.20873 0.94919 0.98742 1.01374 1.20494 0.99354 0.90533 0.99860 1.18766 0.93687 0.92679 1.00631 0.93463 0.88831 0.93506 0.91020 0.90776 0.89615 0.87909 0.87989 0.80660 0.92770 0.92990 0.92062 0.85644 0.86139 0.86435 0.85707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.82 101.05 1.09 1.28 16 2 O -0.36 -3.93 9.88 -55.13 -0.55 -4.48 16 3 C 0.10 0.97 3.24 -27.88 -0.09 0.88 16 4 H 0.10 0.75 7.79 -51.93 -0.40 0.35 16 5 C -0.17 -1.33 9.51 37.16 0.35 -0.98 16 6 C 0.46 6.10 7.29 36.00 0.26 6.37 16 7 O -0.49 -7.94 16.26 -25.46 -0.41 -8.35 16 8 O -0.33 -4.65 9.75 -45.90 -0.45 -5.09 16 9 C 0.02 0.30 5.22 36.01 0.19 0.49 16 10 C 0.43 7.12 7.03 -32.98 -0.23 6.89 16 11 O -0.47 -8.73 16.14 -14.20 -0.23 -8.96 16 12 C -0.31 -5.51 6.11 -104.88 -0.64 -6.15 16 13 C 0.16 2.71 10.71 -16.44 -0.18 2.54 16 14 N -0.42 -8.36 2.70 -115.28 -0.31 -8.67 16 15 C 0.22 5.04 5.68 -5.19 -0.03 5.01 16 16 C -0.55 -13.71 9.39 -34.44 -0.32 -14.03 16 17 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 18 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -23.44 13.29 55.43 0.74 -22.71 16 20 Si 0.91 19.96 29.54 -169.99 -5.02 14.94 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 24 C 0.08 1.66 6.78 -83.95 -0.57 1.09 16 25 C -0.10 -1.79 9.96 -39.42 -0.39 -2.18 16 26 C -0.12 -1.87 10.01 -39.57 -0.40 -2.27 16 27 C -0.14 -2.13 10.03 -39.56 -0.40 -2.52 16 28 C -0.08 -1.44 9.80 -39.39 -0.39 -1.83 16 29 C -0.05 -1.03 6.24 -104.92 -0.65 -1.68 16 30 H 0.05 0.22 7.87 -51.93 -0.41 -0.19 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.25 8.09 -51.93 -0.42 -0.17 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.42 7.87 -51.93 -0.41 0.01 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 1.30 8.13 -51.93 -0.42 0.88 16 37 H 0.10 1.24 8.13 -51.93 -0.42 0.82 16 38 H 0.18 2.39 7.91 -52.48 -0.42 1.98 16 39 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 40 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 42 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 43 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 44 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 45 H 0.12 2.07 7.38 -52.48 -0.39 1.69 16 LS Contribution 396.28 15.07 5.97 5.97 Total: -1.00 -31.63 396.28 -8.96 -40.59 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -6.21 Total: 2.18 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -2.49 Total: -5.44 kcal Atomic # 7 Polarization: -31.80 SS G_CDS: 0.42 Total: -31.37 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -1.64 Total: -26.88 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.63 -8.96 -40.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062530991.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.214 kcal (2) G-P(sol) polarization free energy of solvation -31.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds