Wall clock time and date at job start Wed Apr 1 2020 03:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00484 * 2 1 4 4 H 1.09001 * 109.47255 * 30.00292 * 3 2 1 5 5 C 1.53006 * 109.47036 * 270.00415 * 3 2 1 6 6 C 1.50697 * 109.47590 * 150.00037 * 3 2 1 7 7 O 1.20827 * 119.99943 * 5.00142 * 6 3 2 8 8 O 1.34230 * 120.00241 * 185.00014 * 6 3 2 9 9 C 1.45196 * 116.99934 * 180.02562 * 8 6 3 10 10 C 1.50702 * 109.47502 * 179.97438 * 9 8 6 11 11 O 1.21410 * 119.99513 * 359.97438 * 10 9 8 12 12 C 1.41719 * 120.00493 * 179.97438 * 10 9 8 13 13 C 1.37858 * 126.91082 * 0.02562 * 12 10 9 14 14 N 1.34678 * 109.61921 * 180.02562 * 13 12 10 15 15 C 1.46503 * 124.64306 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.46792 * 265.02163 * 15 14 13 17 17 H 1.07998 * 120.00193 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99853 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99898 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99871 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47609 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47302 * 120.00335 * 20 18 16 23 23 H 1.48507 * 109.47402 * 240.00261 * 20 18 16 24 24 C 1.38018 * 110.71105 * 359.97438 * 14 13 12 25 25 C 1.39138 * 133.03824 * 179.97438 * 24 14 13 26 26 C 1.37776 * 119.94627 * 179.97438 * 25 24 14 27 27 C 1.38729 * 120.63811 * 0.02562 * 26 25 24 28 28 C 1.37800 * 120.26745 * 359.97438 * 27 26 25 29 29 C 1.39195 * 119.67156 * 359.64849 * 28 27 26 30 30 H 1.08994 * 109.47236 * 59.99272 * 1 2 3 31 31 H 1.08995 * 109.47348 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46884 * 300.00129 * 1 2 3 33 33 H 1.09001 * 109.47002 * 299.99477 * 5 3 2 34 34 H 1.08993 * 109.46955 * 59.99914 * 5 3 2 35 35 H 1.09000 * 109.47050 * 179.97438 * 5 3 2 36 36 H 1.09001 * 109.47383 * 299.99889 * 9 8 6 37 37 H 1.09000 * 109.47605 * 59.99861 * 9 8 6 38 38 H 1.08004 * 125.19199 * 359.97156 * 13 12 10 39 39 H 1.08998 * 109.47391 * 25.02157 * 15 14 13 40 40 H 1.08996 * 109.47027 * 145.02663 * 15 14 13 41 41 H 0.96998 * 120.00196 * 179.97438 * 19 18 16 42 42 H 1.07996 * 120.02652 * 0.02614 * 25 24 14 43 43 H 1.08004 * 119.68456 * 179.97438 * 26 25 24 44 44 H 1.07993 * 119.86682 * 179.97438 * 27 26 25 45 45 H 1.08003 * 120.16272 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5139 5 6 2.2177 1.7713 -1.4426 6 6 3.3387 1.2638 0.7104 7 8 3.7880 0.2084 1.0899 8 8 4.0227 2.3992 0.9215 9 6 5.2951 2.2837 1.6113 10 6 5.9140 3.6501 1.7563 11 8 5.3388 4.6263 1.3201 12 6 7.1672 3.7956 2.4017 13 6 7.9398 2.7918 2.9458 14 7 9.0621 3.3194 3.4712 15 6 10.1149 2.5457 4.1340 16 6 9.8801 2.5503 5.6226 17 1 9.0313 3.0765 6.0338 18 6 10.7483 1.8818 6.4595 19 7 11.7816 1.2406 5.9587 20 14 10.4569 1.8869 8.3046 21 1 9.2359 2.6748 8.6108 22 1 10.2790 0.4919 8.7815 23 1 11.6245 2.4987 8.9885 24 6 9.0844 4.6887 3.2998 25 6 9.9993 5.6753 3.6543 26 6 9.7453 6.9929 3.3422 27 6 8.5820 7.3501 2.6759 28 6 7.6639 6.3873 2.3165 29 6 7.9122 5.0515 2.6189 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.8829 1.0774 -1.9564 34 1 1.2569 1.8014 -1.9563 35 1 2.6607 2.7672 -1.4426 36 1 5.1351 1.8503 2.5986 37 1 5.9630 1.6419 1.0368 38 1 7.6838 1.7426 2.9507 39 1 10.0977 1.5196 3.7666 40 1 11.0851 2.9928 3.9179 41 1 12.3926 0.7706 6.5475 42 1 10.9082 5.4082 4.1728 43 1 10.4581 7.7554 3.6197 44 1 8.3953 8.3867 2.4378 45 1 6.7587 6.6673 1.7982 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062530991.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:50 Heat of formation + Delta-G solvation = -123.789679 kcal Electronic energy + Delta-G solvation = -29104.278644 eV Core-core repulsion = 24859.249574 eV Total energy + Delta-G solvation = -4245.029070 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.52409 -41.77501 -39.94369 -38.96911 -38.09722 -37.37095 -35.49011 -33.63611 -32.91715 -31.25286 -31.15649 -29.51948 -28.41087 -27.74139 -25.80668 -25.16905 -24.03028 -23.10160 -21.97338 -21.90499 -20.15328 -19.05594 -18.86839 -18.34497 -17.94907 -17.76423 -17.44618 -17.07249 -16.65675 -16.42919 -16.29638 -16.01490 -15.89619 -15.51414 -15.32061 -14.81696 -14.79371 -14.57805 -14.31912 -14.08507 -13.80947 -13.62479 -13.54904 -13.42465 -13.27713 -13.09785 -12.82235 -12.76871 -12.56149 -12.49298 -12.34937 -12.21650 -11.90850 -11.82889 -11.60162 -11.52810 -10.85555 -10.78626 -10.66165 -10.54704 -9.21835 -8.71017 -8.34873 -6.55514 -0.12325 0.53113 0.88940 1.00489 1.14193 1.34533 1.38278 1.48811 1.95915 2.16786 2.32261 2.81497 2.93640 3.00192 3.10560 3.54745 3.72843 3.77423 3.84185 3.91171 4.02343 4.10085 4.12359 4.21974 4.32021 4.45996 4.54691 4.55214 4.64963 4.67157 4.68668 4.75955 4.84456 4.87224 4.88484 4.91679 5.12476 5.18146 5.24754 5.50257 5.54254 5.65899 5.72137 5.74040 5.89735 5.95867 6.19883 6.28124 6.55460 6.58206 6.69864 7.17153 8.67924 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010217 B = 0.002677 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.809138 B =10456.368051 C =12623.728193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.394 6.394 3 C 0.100 3.900 4 H 0.127 0.873 5 C -0.165 4.165 6 C 0.456 3.544 7 O -0.522 6.522 8 O -0.339 6.339 9 C 0.023 3.977 10 C 0.441 3.559 11 O -0.492 6.492 12 C -0.319 4.319 13 C 0.159 3.841 14 N -0.436 5.436 15 C 0.241 3.759 16 C -0.556 4.556 17 H 0.054 0.946 18 C 0.027 3.973 19 N -0.915 5.915 20 Si 0.964 3.036 21 H -0.272 1.272 22 H -0.273 1.273 23 H -0.275 1.275 24 C 0.057 3.943 25 C -0.123 4.123 26 C -0.109 4.109 27 C -0.129 4.129 28 C -0.096 4.096 29 C -0.078 4.078 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.206 0.794 39 H 0.050 0.950 40 H 0.033 0.967 41 H 0.273 0.727 42 H 0.115 0.885 43 H 0.155 0.845 44 H 0.156 0.844 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.606 3.984 -11.447 20.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.314 6.314 3 C 0.041 3.959 4 H 0.144 0.856 5 C -0.222 4.222 6 C 0.299 3.701 7 O -0.410 6.410 8 O -0.255 6.255 9 C -0.051 4.051 10 C 0.324 3.676 11 O -0.372 6.372 12 C -0.328 4.328 13 C 0.018 3.982 14 N -0.110 5.110 15 C 0.122 3.878 16 C -0.594 4.594 17 H 0.073 0.927 18 C -0.175 4.175 19 N -0.553 5.553 20 Si 0.789 3.211 21 H -0.197 1.197 22 H -0.198 1.198 23 H -0.200 1.200 24 C -0.047 4.047 25 C -0.143 4.143 26 C -0.128 4.128 27 C -0.147 4.147 28 C -0.114 4.114 29 C -0.081 4.081 30 H 0.087 0.913 31 H 0.119 0.881 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.119 0.881 35 H 0.104 0.896 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.222 0.778 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.082 0.918 42 H 0.134 0.866 43 H 0.173 0.827 44 H 0.174 0.826 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.164 3.742 -11.327 20.090 hybrid contribution 0.448 -0.557 1.317 1.499 sum -15.717 3.185 -10.010 18.904 Atomic orbital electron populations 1.23169 0.77693 1.04615 1.01912 1.87980 1.22661 1.25584 1.95143 1.21623 0.88969 0.87497 0.97816 0.85555 1.22221 1.05002 1.02539 0.92416 1.24285 0.87755 0.81378 0.76648 1.90680 1.69429 1.32492 1.48435 1.86532 1.33165 1.35378 1.70431 1.23476 0.83408 0.98219 0.99960 1.19670 0.83624 0.88936 0.75380 1.90501 1.62488 1.41872 1.42316 1.19455 1.00646 0.92951 1.19707 1.23091 0.84616 1.00014 0.90480 1.44498 1.18047 1.05849 1.42581 1.19561 0.84741 0.91285 0.92193 1.21469 1.11992 1.34487 0.91423 0.92736 1.25651 0.94192 0.93983 1.03680 1.69987 1.14610 1.33189 1.37526 0.85399 0.78316 0.78284 0.79097 1.19669 1.19810 1.20004 1.18678 0.98484 0.84086 1.03445 1.20405 0.98836 0.92404 1.02650 1.21136 0.98408 0.94400 0.98872 1.21300 0.93740 1.00168 0.99523 1.20716 1.00137 0.90340 1.00256 1.19124 0.93837 0.93930 1.01222 0.91341 0.88116 0.92559 0.92124 0.88104 0.89590 0.86723 0.86364 0.77761 0.93158 0.94847 0.91774 0.86644 0.82728 0.82617 0.85383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.82 113.37 1.23 1.46 16 2 O -0.39 -8.01 9.88 -129.95 -1.28 -9.29 16 3 C 0.10 1.81 3.24 29.85 0.10 1.90 16 4 H 0.13 1.59 7.79 -2.39 -0.02 1.57 16 5 C -0.16 -2.27 9.51 71.98 0.68 -1.59 16 6 C 0.46 11.86 7.29 71.23 0.52 12.38 16 7 O -0.52 -16.96 16.26 28.38 0.46 -16.50 16 8 O -0.34 -9.18 9.75 -45.06 -0.44 -9.62 16 9 C 0.02 0.63 5.22 71.24 0.37 1.00 16 10 C 0.44 14.32 7.03 26.55 0.19 14.51 16 11 O -0.49 -18.25 16.14 15.35 0.25 -18.00 16 12 C -0.32 -11.22 6.11 -20.03 -0.12 -11.34 16 13 C 0.16 5.48 10.71 84.17 0.90 6.38 16 14 N -0.44 -17.80 2.70 -518.64 -1.40 -19.20 16 15 C 0.24 11.16 5.68 85.63 0.49 11.65 16 16 C -0.56 -28.36 9.39 25.60 0.24 -28.12 16 17 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 18 C 0.03 1.37 5.46 84.66 0.46 1.83 16 19 N -0.92 -48.88 13.29 21.45 0.28 -48.59 16 20 Si 0.96 40.98 29.54 68.60 2.03 43.01 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 24 C 0.06 2.28 6.78 38.90 0.26 2.54 16 25 C -0.12 -4.50 9.96 22.38 0.22 -4.28 16 26 C -0.11 -3.18 10.01 22.28 0.22 -2.96 16 27 C -0.13 -3.60 10.03 22.28 0.22 -3.38 16 28 C -0.10 -3.21 9.80 22.40 0.22 -2.99 16 29 C -0.08 -2.96 6.24 -20.06 -0.13 -3.08 16 30 H 0.07 0.43 7.87 -2.39 -0.02 0.42 16 31 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.49 8.09 -2.39 -0.02 0.47 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.10 0.84 7.87 -2.39 -0.02 0.83 16 35 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.11 2.80 8.13 -2.39 -0.02 2.79 16 37 H 0.12 2.78 8.13 -2.39 -0.02 2.76 16 38 H 0.21 5.48 7.91 -2.91 -0.02 5.46 16 39 H 0.05 2.34 8.10 -2.39 -0.02 2.32 16 40 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 42 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 43 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 44 H 0.16 3.14 8.06 -2.91 -0.02 3.11 16 45 H 0.13 4.15 7.38 -2.91 -0.02 4.13 16 Total: -1.00 -69.39 396.28 6.98 -62.42 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 1.00 Total: 19.87 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: 6.08 Total: -4.10 kcal Atomic # 7 Polarization: -66.68 SS G_CDS: -1.12 Total: -67.79 kcal Atomic # 8 Polarization: -52.39 SS G_CDS: -1.01 Total: -53.41 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -69.39 6.98 -62.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062530991.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.372 kcal (2) G-P(sol) polarization free energy of solvation -69.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds