Wall clock time and date at job start Wed Apr 1 2020 02:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42908 * 109.46900 * 2 1 4 4 C 1.52996 * 109.47027 * 119.99771 * 2 1 3 5 5 N 1.46495 * 109.47276 * 304.99712 * 4 2 1 6 6 C 1.34783 * 119.99931 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99796 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99878 * 180.02562 * 6 5 4 9 9 C 1.50699 * 109.46970 * 180.02562 * 8 6 5 10 10 C 1.38328 * 119.96224 * 270.02075 * 9 8 6 11 11 C 1.38280 * 120.13484 * 180.02562 * 10 9 8 12 12 C 1.38120 * 120.07150 * 359.67534 * 11 10 9 13 13 C 1.38861 * 119.92830 * 0.59673 * 12 11 10 14 14 O 1.35751 * 120.06597 * 179.69892 * 13 12 11 15 15 C 1.34829 * 117.00376 * 354.17384 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38657 * 120.00083 * 185.03464 * 15 14 13 18 18 N 1.31555 * 119.99797 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99748 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47410 * 90.00109 * 19 17 15 21 21 H 1.48504 * 109.46801 * 209.99865 * 19 17 15 22 22 H 1.48497 * 109.47495 * 329.99577 * 19 17 15 23 23 C 1.38073 * 119.96952 * 89.99515 * 9 8 6 24 24 C 1.50702 * 109.47224 * 240.00335 * 2 1 3 25 25 C 1.34513 * 125.79427 * 89.71025 * 24 2 1 26 26 C 1.41377 * 106.84076 * 179.89111 * 25 24 2 27 27 C 1.34507 * 106.84227 * 0.37321 * 26 25 24 28 28 O 1.34306 * 108.42324 * 359.77471 * 27 26 25 29 29 H 1.09004 * 109.47098 * 299.99953 * 1 2 3 30 30 H 1.09004 * 109.47293 * 60.00045 * 1 2 3 31 31 H 1.08997 * 109.46963 * 180.02562 * 1 2 3 32 32 H 0.96694 * 113.99551 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.46601 * 185.00263 * 4 2 1 34 34 H 1.08997 * 109.47252 * 65.00783 * 4 2 1 35 35 H 0.97001 * 120.00257 * 0.02562 * 5 4 2 36 36 H 1.08996 * 109.47386 * 59.99804 * 8 6 5 37 37 H 1.08997 * 109.47038 * 299.99640 * 8 6 5 38 38 H 1.08001 * 119.93314 * 359.97438 * 10 9 8 39 39 H 1.08007 * 119.96121 * 179.97438 * 11 10 9 40 40 H 1.08001 * 120.03709 * 180.32387 * 12 11 10 41 41 H 0.96998 * 119.99749 * 179.97438 * 18 17 15 42 42 H 1.08001 * 120.03594 * 0.04940 * 23 9 8 43 43 H 1.08007 * 126.57451 * 0.03068 * 25 24 2 44 44 H 1.07999 * 126.57902 * 180.16190 * 26 25 24 45 45 H 1.08004 * 125.78915 * 179.74997 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.4559 -0.1035 2.4423 6 6 1.7649 -0.5767 3.6660 7 8 2.5268 -1.5135 3.7793 8 6 1.1636 0.0583 4.8933 9 6 1.6670 -0.6512 6.1238 10 6 0.9733 -1.7366 6.6278 11 6 1.4317 -2.3900 7.7570 12 6 2.5880 -1.9645 8.3813 13 6 3.2835 -0.8717 7.8811 14 8 4.4169 -0.4473 8.4961 15 6 4.7478 -1.0521 9.6548 16 1 4.1674 -1.8900 10.0116 17 6 5.8334 -0.5983 10.3883 18 7 6.1560 -1.1881 11.5191 19 14 6.8370 0.8515 9.7715 20 1 6.2645 2.1131 10.3061 21 1 8.2423 0.7119 10.2308 22 1 6.8022 0.8820 8.2872 23 6 2.8204 -0.2175 6.7466 24 6 2.0324 -0.7103 -1.2305 25 6 2.2894 -0.1372 -2.4200 26 6 2.7398 -1.1643 -3.2808 27 6 2.7231 -2.3051 -2.5684 28 8 2.2937 -2.0242 -1.3272 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 2.9702 1.4237 -0.0004 33 1 3.1263 -0.6442 1.2951 34 1 1.7517 -1.7714 1.2056 35 1 0.8468 0.6460 2.3517 36 1 0.0774 -0.0193 4.8474 37 1 1.4512 1.1087 4.9368 38 1 0.0713 -2.0740 6.1388 39 1 0.8876 -3.2370 8.1484 40 1 2.9483 -2.4784 9.2602 41 1 6.9157 -0.8708 12.0321 42 1 3.3614 0.6303 6.3529 43 1 2.1759 0.9077 -2.6688 44 1 3.0366 -1.0546 -4.3133 45 1 3.0065 -3.2815 -2.9327 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089833744.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:10 Heat of formation + Delta-G solvation = -67.366046 kcal Electronic energy + Delta-G solvation = -28876.457322 eV Core-core repulsion = 24633.874964 eV Total energy + Delta-G solvation = -4242.582358 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.05513 -40.05655 -39.07213 -38.30782 -36.58753 -34.62242 -33.32774 -32.52482 -32.31838 -31.88122 -29.43881 -29.06951 -27.92664 -26.26274 -25.08986 -22.95291 -22.12607 -21.73664 -21.05525 -20.65473 -20.13203 -18.54903 -17.77119 -17.55499 -16.98417 -16.61736 -16.55744 -15.80351 -15.57604 -15.19666 -15.10479 -14.96926 -14.47845 -13.92799 -13.82266 -13.58908 -13.54253 -13.38187 -13.25058 -13.09616 -12.98641 -12.83805 -12.53081 -12.46588 -12.28606 -12.13517 -11.86288 -11.61326 -11.26825 -10.92066 -10.79369 -10.76159 -10.67346 -10.33952 -10.11873 -9.80926 -9.34115 -9.22425 -8.96122 -8.82373 -8.09671 -7.30522 -6.36251 -4.02736 1.25509 2.05158 2.18504 2.33889 2.45476 2.72189 3.02339 3.25683 3.28591 3.44635 3.63970 4.02716 4.16633 4.28431 4.40452 4.51414 4.62694 4.70814 4.77190 4.94805 5.09716 5.13081 5.18475 5.23984 5.27501 5.37439 5.39333 5.49133 5.50142 5.59512 5.60441 5.65928 5.73482 5.89052 6.04253 6.17015 6.23918 6.30455 6.57963 6.63928 6.84078 6.98625 7.15070 7.26300 7.36167 7.39276 7.66183 7.86233 8.09728 8.26022 8.99381 9.62800 10.71629 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016018 B = 0.002040 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.629255 B =13721.591759 C =14410.461662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.210 3.790 3 O -0.537 6.537 4 C 0.098 3.902 5 N -0.733 5.733 6 C 0.513 3.487 7 O -0.518 6.518 8 C -0.093 4.093 9 C -0.035 4.035 10 C -0.188 4.188 11 C -0.076 4.076 12 C -0.217 4.217 13 C 0.160 3.840 14 O -0.220 6.220 15 C -0.387 4.387 16 H 0.106 0.894 17 C 0.062 3.938 18 N -0.882 5.882 19 Si 0.905 3.095 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.260 1.260 23 C -0.174 4.174 24 C -0.050 4.050 25 C -0.186 4.186 26 C -0.218 4.218 27 C -0.032 4.032 28 O -0.167 6.167 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.386 0.614 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.402 0.598 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.132 0.868 41 H 0.278 0.722 42 H 0.114 0.886 43 H 0.152 0.848 44 H 0.150 0.850 45 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.535 3.506 -28.302 31.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.168 3.832 3 O -0.344 6.344 4 C -0.027 4.027 5 N -0.389 5.389 6 C 0.300 3.700 7 O -0.392 6.392 8 C -0.133 4.133 9 C -0.036 4.036 10 C -0.207 4.207 11 C -0.095 4.095 12 C -0.236 4.236 13 C 0.108 3.892 14 O -0.125 6.125 15 C -0.463 4.463 16 H 0.123 0.877 17 C -0.141 4.141 18 N -0.520 5.520 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.184 1.184 23 C -0.194 4.194 24 C -0.101 4.101 25 C -0.205 4.205 26 C -0.237 4.237 27 C -0.100 4.100 28 O -0.063 6.063 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.235 0.765 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.238 0.762 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.128 0.872 40 H 0.150 0.850 41 H 0.089 0.911 42 H 0.132 0.868 43 H 0.169 0.831 44 H 0.167 0.833 45 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -12.308 2.905 -27.826 30.565 hybrid contribution 0.987 0.664 -0.502 1.291 sum -11.321 3.569 -28.329 30.715 Atomic orbital electron populations 1.21802 0.90190 1.03560 1.03812 1.19583 0.95328 0.81212 0.87087 1.86605 1.27970 1.23506 1.96293 1.21888 0.99011 0.98080 0.83725 1.45949 1.50470 1.37252 1.05214 1.20795 0.81498 0.83693 0.84061 1.90774 1.34490 1.27576 1.86315 1.20579 1.01538 1.00644 0.90510 1.18654 0.94935 0.95981 0.94029 1.20421 1.01906 0.98905 0.99429 1.20737 0.95468 0.98263 0.95000 1.21295 0.98128 1.00190 1.04021 1.19013 0.86056 0.92226 0.91896 1.83567 1.35074 1.57907 1.35949 1.20762 1.14865 1.15193 0.95500 0.87667 1.24456 0.96632 0.98448 0.94539 1.69649 1.28172 1.41020 1.13153 0.86185 0.78649 0.81687 0.80410 1.19928 1.20840 1.18385 1.19941 0.98269 1.03333 0.97825 1.22961 1.06618 0.82025 0.98495 1.21589 1.05353 1.01092 0.92495 1.21886 1.07570 0.92622 1.01668 1.24175 1.02857 1.00796 0.82213 1.84059 1.64914 1.25311 1.32033 0.90569 0.90890 0.90270 0.76471 0.90849 0.89958 0.76212 0.88228 0.88160 0.87720 0.87180 0.85002 0.91144 0.86838 0.83073 0.83261 0.77870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 8.60 37.16 0.32 -0.52 16 2 C 0.21 1.54 1.01 -91.77 -0.09 1.45 16 3 O -0.54 -3.63 12.54 -35.23 -0.44 -4.07 16 4 C 0.10 0.93 4.64 -4.05 -0.02 0.91 16 5 N -0.73 -7.02 5.19 -60.30 -0.31 -7.34 16 6 C 0.51 7.02 7.82 -10.98 -0.09 6.94 16 7 O -0.52 -9.79 16.03 5.56 0.09 -9.70 16 8 C -0.09 -1.15 5.83 -29.04 -0.17 -1.32 16 9 C -0.04 -0.62 4.37 -104.65 -0.46 -1.08 16 10 C -0.19 -3.31 9.70 -39.53 -0.38 -3.69 16 11 C -0.08 -1.46 10.04 -39.61 -0.40 -1.86 16 12 C -0.22 -4.92 9.17 -39.39 -0.36 -5.28 16 13 C 0.16 3.87 6.65 -39.11 -0.26 3.61 16 14 O -0.22 -6.01 8.59 0.05 0.00 -6.01 16 15 C -0.39 -11.23 9.95 30.89 0.31 -10.92 16 16 H 0.11 3.11 5.44 -52.49 -0.29 2.82 16 17 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 18 N -0.88 -25.96 13.96 55.48 0.77 -25.19 16 19 Si 0.91 22.20 28.62 -169.99 -4.86 17.33 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.26 -6.44 7.11 56.52 0.40 -6.04 16 23 C -0.17 -3.63 9.64 -39.40 -0.38 -4.01 16 24 C -0.05 -0.42 5.85 -35.62 -0.21 -0.62 16 25 C -0.19 -1.43 10.36 -39.71 -0.41 -1.84 16 26 C -0.22 -1.53 10.91 -39.71 -0.43 -1.96 16 27 C -0.03 -0.23 12.09 29.41 0.36 0.13 16 28 O -0.17 -1.55 10.15 5.69 0.06 -1.49 16 29 H 0.08 0.39 6.57 -51.93 -0.34 0.05 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.39 1.79 9.04 45.56 0.41 2.20 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.90 7.92 -51.93 -0.41 0.49 16 35 H 0.40 2.76 6.99 -40.82 -0.29 2.47 16 36 H 0.10 0.92 8.09 -51.93 -0.42 0.50 16 37 H 0.10 1.04 8.08 -51.93 -0.42 0.62 16 38 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 40 H 0.13 3.11 5.64 -52.49 -0.30 2.81 16 41 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.11 2.22 8.06 -52.49 -0.42 1.80 16 43 H 0.15 0.99 8.06 -52.48 -0.42 0.57 16 44 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.20 0.72 8.06 -52.48 -0.42 0.30 16 LS Contribution 387.37 15.07 5.84 5.84 Total: -1.00 -35.76 387.37 -6.62 -42.39 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -4.99 Total: 6.63 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: -2.77 Total: -18.39 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.46 Total: -32.52 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.29 Total: -21.27 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.86 Total: 17.33 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.76 -6.62 -42.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089833744.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.981 kcal (2) G-P(sol) polarization free energy of solvation -35.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds