Wall clock time and date at job start Wed Apr 1 2020 02:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42908 * 109.46900 * 2 1 4 4 C 1.52996 * 109.47027 * 119.99771 * 2 1 3 5 5 N 1.46495 * 109.47276 * 304.99712 * 4 2 1 6 6 C 1.34783 * 119.99931 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99796 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99878 * 180.02562 * 6 5 4 9 9 C 1.50699 * 109.46970 * 180.02562 * 8 6 5 10 10 C 1.38328 * 119.96224 * 270.02075 * 9 8 6 11 11 C 1.38280 * 120.13484 * 180.02562 * 10 9 8 12 12 C 1.38120 * 120.07150 * 359.67534 * 11 10 9 13 13 C 1.38861 * 119.92830 * 0.59673 * 12 11 10 14 14 O 1.35751 * 120.06597 * 179.69892 * 13 12 11 15 15 C 1.34829 * 117.00376 * 354.17384 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38657 * 120.00083 * 185.03464 * 15 14 13 18 18 N 1.31555 * 119.99797 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99748 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47410 * 90.00109 * 19 17 15 21 21 H 1.48504 * 109.46801 * 209.99865 * 19 17 15 22 22 H 1.48497 * 109.47495 * 329.99577 * 19 17 15 23 23 C 1.38073 * 119.96952 * 89.99515 * 9 8 6 24 24 C 1.50702 * 109.47224 * 240.00335 * 2 1 3 25 25 C 1.34513 * 125.79427 * 89.71025 * 24 2 1 26 26 C 1.41377 * 106.84076 * 179.89111 * 25 24 2 27 27 C 1.34507 * 106.84227 * 0.37321 * 26 25 24 28 28 O 1.34306 * 108.42324 * 359.77471 * 27 26 25 29 29 H 1.09004 * 109.47098 * 299.99953 * 1 2 3 30 30 H 1.09004 * 109.47293 * 60.00045 * 1 2 3 31 31 H 1.08997 * 109.46963 * 180.02562 * 1 2 3 32 32 H 0.96694 * 113.99551 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.46601 * 185.00263 * 4 2 1 34 34 H 1.08997 * 109.47252 * 65.00783 * 4 2 1 35 35 H 0.97001 * 120.00257 * 0.02562 * 5 4 2 36 36 H 1.08996 * 109.47386 * 59.99804 * 8 6 5 37 37 H 1.08997 * 109.47038 * 299.99640 * 8 6 5 38 38 H 1.08001 * 119.93314 * 359.97438 * 10 9 8 39 39 H 1.08007 * 119.96121 * 179.97438 * 11 10 9 40 40 H 1.08001 * 120.03709 * 180.32387 * 12 11 10 41 41 H 0.96998 * 119.99749 * 179.97438 * 18 17 15 42 42 H 1.08001 * 120.03594 * 0.04940 * 23 9 8 43 43 H 1.08007 * 126.57451 * 0.03068 * 25 24 2 44 44 H 1.07999 * 126.57902 * 180.16190 * 26 25 24 45 45 H 1.08004 * 125.78915 * 179.74997 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.4559 -0.1035 2.4423 6 6 1.7649 -0.5767 3.6660 7 8 2.5268 -1.5135 3.7793 8 6 1.1636 0.0583 4.8933 9 6 1.6670 -0.6512 6.1238 10 6 0.9733 -1.7366 6.6278 11 6 1.4317 -2.3900 7.7570 12 6 2.5880 -1.9645 8.3813 13 6 3.2835 -0.8717 7.8811 14 8 4.4169 -0.4473 8.4961 15 6 4.7478 -1.0521 9.6548 16 1 4.1674 -1.8900 10.0116 17 6 5.8334 -0.5983 10.3883 18 7 6.1560 -1.1881 11.5191 19 14 6.8370 0.8515 9.7715 20 1 6.2645 2.1131 10.3061 21 1 8.2423 0.7119 10.2308 22 1 6.8022 0.8820 8.2872 23 6 2.8204 -0.2175 6.7466 24 6 2.0324 -0.7103 -1.2305 25 6 2.2894 -0.1372 -2.4200 26 6 2.7398 -1.1643 -3.2808 27 6 2.7231 -2.3051 -2.5684 28 8 2.2937 -2.0242 -1.3272 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 2.9702 1.4237 -0.0004 33 1 3.1263 -0.6442 1.2951 34 1 1.7517 -1.7714 1.2056 35 1 0.8468 0.6460 2.3517 36 1 0.0774 -0.0193 4.8474 37 1 1.4512 1.1087 4.9368 38 1 0.0713 -2.0740 6.1388 39 1 0.8876 -3.2370 8.1484 40 1 2.9483 -2.4784 9.2602 41 1 6.9157 -0.8708 12.0321 42 1 3.3614 0.6303 6.3529 43 1 2.1759 0.9077 -2.6688 44 1 3.0366 -1.0546 -4.3133 45 1 3.0065 -3.2815 -2.9327 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089833744.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:09 Heat of formation + Delta-G solvation = -93.922021 kcal Electronic energy + Delta-G solvation = -28877.608876 eV Core-core repulsion = 24633.874964 eV Total energy + Delta-G solvation = -4243.733912 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.61641 -41.22943 -40.57891 -39.16128 -38.22515 -35.49404 -34.48206 -33.89152 -33.60412 -32.77439 -31.08706 -29.68630 -28.98781 -27.41435 -26.95189 -23.72162 -23.27332 -22.74252 -22.39363 -21.50211 -21.06818 -19.66947 -19.12587 -18.98078 -18.28060 -17.37503 -17.16370 -16.88989 -16.83445 -16.46083 -16.32482 -15.84333 -15.81038 -15.58708 -15.38907 -14.99346 -14.61672 -14.40378 -14.17437 -14.08417 -13.89878 -13.81054 -13.71538 -13.46827 -13.35988 -13.04769 -12.93082 -12.75969 -12.51797 -12.43980 -12.41277 -12.33714 -11.93135 -11.51254 -11.31254 -10.99337 -10.90058 -10.88323 -10.15913 -9.66662 -9.50338 -9.06082 -8.50343 -6.23008 0.48734 0.69767 0.70779 1.29317 1.34105 1.50859 1.65302 1.67891 1.93944 2.13797 2.27692 2.78009 3.05219 3.08744 3.17042 3.39578 3.64206 3.77141 3.80704 4.08078 4.11680 4.12963 4.24088 4.30901 4.43775 4.52133 4.55705 4.63524 4.66687 4.71105 4.72014 4.78572 4.91028 4.98052 4.99147 5.10198 5.18648 5.25209 5.37607 5.40171 5.54773 5.65505 5.73050 5.76809 5.91799 6.10474 6.25389 6.50606 6.57801 6.83880 7.29703 7.58993 8.61459 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016018 B = 0.002040 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.629255 B =13721.591759 C =14410.461662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.222 3.778 3 O -0.538 6.538 4 C 0.100 3.900 5 N -0.709 5.709 6 C 0.514 3.486 7 O -0.579 6.579 8 C -0.089 4.089 9 C -0.028 4.028 10 C -0.171 4.171 11 C -0.079 4.079 12 C -0.241 4.241 13 C 0.117 3.883 14 O -0.247 6.247 15 C -0.399 4.399 16 H 0.079 0.921 17 C 0.008 3.992 18 N -0.923 5.923 19 Si 0.972 3.028 20 H -0.261 1.261 21 H -0.266 1.266 22 H -0.267 1.267 23 C -0.182 4.182 24 C -0.067 4.067 25 C -0.191 4.191 26 C -0.228 4.228 27 C -0.040 4.040 28 O -0.189 6.189 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.395 0.605 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.420 0.580 36 H 0.146 0.854 37 H 0.128 0.872 38 H 0.149 0.851 39 H 0.140 0.860 40 H 0.106 0.894 41 H 0.285 0.715 42 H 0.122 0.878 43 H 0.161 0.839 44 H 0.168 0.832 45 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.872 5.185 -31.453 35.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.180 3.820 3 O -0.346 6.346 4 C -0.025 4.025 5 N -0.364 5.364 6 C 0.302 3.698 7 O -0.458 6.458 8 C -0.128 4.128 9 C -0.029 4.029 10 C -0.189 4.189 11 C -0.097 4.097 12 C -0.260 4.260 13 C 0.068 3.932 14 O -0.155 6.155 15 C -0.476 4.476 16 H 0.097 0.903 17 C -0.190 4.190 18 N -0.564 5.564 19 Si 0.794 3.206 20 H -0.186 1.186 21 H -0.191 1.191 22 H -0.192 1.192 23 C -0.201 4.201 24 C -0.118 4.118 25 C -0.210 4.210 26 C -0.247 4.247 27 C -0.107 4.107 28 O -0.086 6.086 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.245 0.755 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.259 0.741 36 H 0.164 0.836 37 H 0.146 0.854 38 H 0.167 0.833 39 H 0.158 0.842 40 H 0.124 0.876 41 H 0.094 0.906 42 H 0.140 0.860 43 H 0.179 0.821 44 H 0.186 0.814 45 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -14.708 4.620 -31.027 34.646 hybrid contribution 1.450 0.047 0.224 1.468 sum -13.257 4.667 -30.803 33.858 Atomic orbital electron populations 1.21849 0.89054 1.03821 1.04741 1.19455 0.96005 0.81010 0.85549 1.86590 1.28942 1.22938 1.96147 1.21845 0.98188 0.97772 0.84651 1.45714 1.49625 1.36941 1.04142 1.20996 0.80639 0.82869 0.85316 1.90774 1.37383 1.30473 1.87190 1.20706 1.03996 1.01160 0.86986 1.19234 0.93078 0.95548 0.95040 1.21032 1.02553 0.97445 0.97858 1.21119 0.94146 0.99108 0.95314 1.21322 1.00002 1.00522 1.04163 1.19613 0.86301 0.93790 0.93457 1.83504 1.37327 1.58880 1.35793 1.20708 1.15168 1.15025 0.96667 0.90322 1.25300 0.97675 1.01306 0.94736 1.69732 1.29343 1.42896 1.14471 0.85200 0.77723 0.78497 0.79159 1.18615 1.19087 1.19178 1.20291 0.99466 1.03525 0.96789 1.23175 1.07491 0.81985 0.99127 1.21820 1.04954 1.01744 0.92482 1.22212 1.07468 0.92430 1.02594 1.24840 1.02145 1.02215 0.81518 1.84050 1.65474 1.25880 1.33197 0.89150 0.90452 0.90372 0.75464 0.92425 0.91403 0.74126 0.83625 0.85361 0.83289 0.84206 0.87568 0.90576 0.85986 0.82128 0.81405 0.75162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.60 71.98 0.62 -0.69 16 2 C 0.22 2.82 1.01 -11.54 -0.01 2.81 16 3 O -0.54 -5.96 12.54 -148.98 -1.87 -7.83 16 4 C 0.10 1.77 4.64 86.38 0.40 2.17 16 5 N -0.71 -11.36 5.19 -463.07 -2.40 -13.76 16 6 C 0.51 12.49 7.82 87.66 0.69 13.18 16 7 O -0.58 -21.19 16.03 -3.03 -0.05 -21.24 16 8 C -0.09 -1.78 5.83 29.10 0.17 -1.61 16 9 C -0.03 -0.91 4.37 -19.88 -0.09 -1.00 16 10 C -0.17 -5.40 9.70 22.30 0.22 -5.18 16 11 C -0.08 -2.92 10.04 22.25 0.22 -2.70 16 12 C -0.24 -11.37 9.17 22.39 0.21 -11.17 16 13 C 0.12 5.88 6.65 22.58 0.15 6.03 16 14 O -0.25 -14.21 8.59 -22.74 -0.20 -14.41 16 15 C -0.40 -24.63 9.95 67.92 0.68 -23.95 16 16 H 0.08 5.09 5.44 -2.91 -0.02 5.07 16 17 C 0.01 0.47 5.49 84.83 0.47 0.94 16 18 N -0.92 -56.75 13.96 21.61 0.30 -56.44 16 19 Si 0.97 47.07 28.62 68.60 1.96 49.04 16 20 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 23 C -0.18 -7.46 9.64 22.39 0.22 -7.25 16 24 C -0.07 -1.04 5.85 24.83 0.15 -0.89 16 25 C -0.19 -2.64 10.36 22.19 0.23 -2.41 16 26 C -0.23 -2.81 10.91 22.19 0.24 -2.57 16 27 C -0.04 -0.51 12.09 66.97 0.81 0.30 16 28 O -0.19 -3.35 10.15 -2.55 -0.03 -3.38 16 29 H 0.09 0.57 6.57 -2.38 -0.02 0.55 16 30 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.39 2.89 9.04 -74.06 -0.67 2.22 16 33 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.07 1.43 7.92 -2.39 -0.02 1.42 16 35 H 0.42 3.89 6.99 -92.71 -0.65 3.25 16 36 H 0.15 1.66 8.09 -2.39 -0.02 1.64 16 37 H 0.13 1.95 8.08 -2.39 -0.02 1.93 16 38 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 39 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 40 H 0.11 5.47 5.64 -2.91 -0.02 5.45 16 41 H 0.28 15.99 8.31 -92.71 -0.77 15.22 16 42 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 43 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16 44 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 45 H 0.23 1.22 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -83.82 387.37 2.81 -81.01 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -0.27 Total: 21.01 kcal Atomic # 6 Polarization: -39.35 SS G_CDS: 5.36 Total: -34.00 kcal Atomic # 7 Polarization: -68.10 SS G_CDS: -2.10 Total: -70.20 kcal Atomic # 8 Polarization: -44.72 SS G_CDS: -2.14 Total: -46.86 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.96 Total: 49.04 kcal Total: -83.82 2.81 -81.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089833744.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.914 kcal (2) G-P(sol) polarization free energy of solvation -83.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds