Wall clock time and date at job start Wed Apr 1 2020 03:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47217 * 2 1 4 4 C 1.53002 * 109.47131 * 120.00243 * 2 1 3 5 5 H 1.09004 * 109.46592 * 299.99816 * 4 2 1 6 6 C 1.50700 * 109.47318 * 180.02562 * 4 2 1 7 7 O 1.20822 * 119.99958 * 239.99536 * 6 4 2 8 8 O 1.34234 * 120.00068 * 59.99727 * 6 4 2 9 9 C 1.45196 * 116.99938 * 179.97438 * 8 6 4 10 10 H 1.09004 * 109.47117 * 30.00246 * 9 8 6 11 11 C 1.52994 * 109.47482 * 269.99807 * 9 8 6 12 12 C 1.50707 * 109.46838 * 149.99799 * 9 8 6 13 13 H 1.07998 * 120.00336 * 0.02562 * 12 9 8 14 14 C 1.37884 * 119.99623 * 180.02562 * 12 9 8 15 15 N 1.31518 * 120.00031 * 359.97438 * 14 12 9 16 16 Si 1.86797 * 119.99709 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47178 * 60.00073 * 16 14 12 18 18 H 1.48497 * 109.46986 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47120 * 300.00007 * 16 14 12 20 20 N 1.46497 * 109.47495 * 59.99898 * 4 2 1 21 21 C 1.34517 * 124.45700 * 59.69905 * 20 4 2 22 22 O 1.21448 * 125.71174 * 0.03942 * 21 20 4 23 23 C 1.47823 * 108.58175 * 179.90814 * 21 20 4 24 24 C 1.38564 * 134.30315 * 180.09996 * 23 21 20 25 25 C 1.38609 * 119.72142 * 180.26976 * 24 23 21 26 26 C 1.38230 * 120.45903 * 0.02562 * 25 24 23 27 27 C 1.38611 * 120.45866 * 359.97438 * 26 25 24 28 28 C 1.38569 * 119.72313 * 0.02562 * 27 26 25 29 29 C 1.34524 * 124.46185 * 240.00349 * 20 4 2 30 30 O 1.21445 * 125.70750 * 359.96302 * 29 20 4 31 31 H 1.08993 * 109.47710 * 300.00191 * 1 2 3 32 32 H 1.09005 * 109.47052 * 60.00025 * 1 2 3 33 33 H 1.09008 * 109.47040 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47560 * 240.00083 * 2 1 3 35 35 H 1.09005 * 109.47175 * 179.97438 * 3 2 1 36 36 H 1.08997 * 109.47244 * 300.00235 * 3 2 1 37 37 H 1.09002 * 109.46787 * 59.99610 * 3 2 1 38 38 H 1.09002 * 109.47001 * 60.00056 * 11 9 8 39 39 H 1.08994 * 109.47774 * 180.02562 * 11 9 8 40 40 H 1.09004 * 109.47303 * 300.00325 * 11 9 8 41 41 H 0.96998 * 119.99390 * 180.02562 * 15 14 12 42 42 H 1.08006 * 120.13869 * 0.25215 * 24 23 21 43 43 H 1.07996 * 119.76971 * 180.02562 * 25 24 23 44 44 H 1.07997 * 119.76829 * 180.02562 * 26 25 24 45 45 H 1.07999 * 120.13997 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 3.5469 -0.7208 1.2496 7 8 4.1514 -1.7669 1.2496 8 8 4.2177 0.4419 1.2499 9 6 5.6677 0.3664 1.2508 10 1 5.9846 -0.5413 0.7372 11 6 6.1762 0.3401 2.6936 12 6 6.2338 1.5691 0.5406 13 1 5.5702 2.3157 0.1300 14 6 7.5990 1.7162 0.4150 15 7 8.4071 0.8072 0.9154 16 14 8.3006 3.2072 -0.4647 17 1 7.8695 4.4436 0.2359 18 1 9.7836 3.1299 -0.4639 19 1 7.8066 3.2338 -1.8648 20 7 1.5516 -2.1025 1.2493 21 6 1.8160 -3.0032 0.2858 22 8 2.4875 -2.8037 -0.7063 23 6 1.1551 -4.2777 0.6382 24 6 1.0784 -5.5256 0.0410 25 6 0.3487 -6.5349 0.6493 26 6 -0.3029 -6.3046 1.8465 27 6 -0.2351 -5.0613 2.4554 28 6 0.4907 -4.0427 1.8589 29 6 0.7750 -2.6353 2.2098 30 8 0.3743 -2.0566 3.1995 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.6765 1.9563 0.8900 38 1 5.7668 -0.5298 3.2072 39 1 7.2647 0.2838 2.6943 40 1 5.8593 1.2478 3.2072 41 1 9.3675 0.9110 0.8274 42 1 1.5850 -5.7111 -0.8947 43 1 0.2888 -7.5080 0.1848 44 1 -0.8680 -7.0991 2.3109 45 1 -0.7459 -4.8871 3.3909 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113689759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:13 Heat of formation + Delta-G solvation = -102.619781 kcal Electronic energy + Delta-G solvation = -31271.008666 eV Core-core repulsion = 27026.897591 eV Total energy + Delta-G solvation = -4244.111075 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.59011 -39.85569 -38.68402 -38.55405 -36.45490 -35.75493 -35.21813 -33.24874 -31.68295 -31.44780 -29.74392 -27.95692 -26.94479 -25.33374 -25.24922 -23.85402 -22.47285 -22.09015 -20.67788 -20.23309 -19.41082 -18.07185 -17.46705 -17.13372 -16.82979 -16.44610 -16.15861 -15.56821 -15.30930 -15.18815 -14.98776 -14.61072 -14.54444 -14.30946 -14.00801 -13.68145 -13.37365 -13.01218 -12.93077 -12.65012 -12.60809 -12.35164 -12.08909 -11.98773 -11.80309 -11.53709 -11.27450 -11.08897 -11.00761 -10.92126 -10.71921 -10.56527 -10.35970 -10.29105 -10.23933 -10.10448 -9.61189 -9.56257 -9.53310 -9.36416 -8.90528 -8.49671 -6.18736 -4.26006 -0.13381 0.65875 1.85267 2.06306 2.80113 2.84451 3.26577 3.29819 3.31233 3.31862 3.40224 3.60917 4.14736 4.30782 4.31767 4.52250 4.62229 4.73074 4.85239 4.89732 4.97281 5.06509 5.14397 5.22621 5.37568 5.44886 5.52859 5.57793 5.64330 5.76439 5.79342 5.84296 5.90201 6.00683 6.15481 6.24924 6.34529 6.60405 6.61490 6.81967 6.87634 6.89829 7.09924 7.14574 7.56606 7.60361 7.70322 7.89316 8.11239 8.53444 8.83531 9.39077 10.88732 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017201 B = 0.003133 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.398334 B = 8935.912859 C = 9404.403519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 C -0.159 4.159 4 C 0.152 3.848 5 H 0.138 0.862 6 C 0.449 3.551 7 O -0.504 6.504 8 O -0.341 6.341 9 C 0.214 3.786 10 H 0.047 0.953 11 C -0.155 4.155 12 C -0.520 4.520 13 H 0.070 0.930 14 C 0.063 3.937 15 N -0.889 5.889 16 Si 0.912 3.088 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.274 1.274 20 N -0.560 5.560 21 C 0.576 3.424 22 O -0.438 6.438 23 C -0.128 4.128 24 C -0.048 4.048 25 C -0.096 4.096 26 C -0.101 4.101 27 C -0.046 4.046 28 C -0.138 4.138 29 C 0.579 3.421 30 O -0.465 6.465 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.014 0.986 39 H 0.100 0.900 40 H 0.038 0.962 41 H 0.267 0.733 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.200 -11.945 0.188 23.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.217 4.217 4 C 0.049 3.951 5 H 0.156 0.844 6 C 0.289 3.711 7 O -0.392 6.392 8 O -0.257 6.257 9 C 0.162 3.838 10 H 0.065 0.935 11 C -0.213 4.213 12 C -0.558 4.558 13 H 0.088 0.912 14 C -0.139 4.139 15 N -0.526 5.526 16 Si 0.739 3.261 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.199 1.199 20 N -0.302 5.302 21 C 0.364 3.636 22 O -0.307 6.307 23 C -0.132 4.132 24 C -0.066 4.066 25 C -0.114 4.114 26 C -0.119 4.119 27 C -0.064 4.064 28 C -0.141 4.141 29 C 0.368 3.632 30 O -0.337 6.337 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.033 0.967 39 H 0.118 0.882 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.161 0.839 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -19.552 -11.753 0.196 22.813 hybrid contribution 0.686 0.571 -0.253 0.928 sum -18.865 -11.182 -0.057 21.930 Atomic orbital electron populations 1.21822 0.94086 1.01384 1.02686 1.21427 0.96447 0.98213 0.96036 1.22085 1.05276 0.92503 1.01788 1.21011 0.90379 0.79688 1.03986 0.84443 1.23030 0.90219 0.84005 0.73829 1.90631 1.69955 1.33439 1.45216 1.86522 1.26834 1.31032 1.81285 1.20715 0.68903 0.99394 0.94774 0.93499 1.22170 1.04948 0.97619 0.96544 1.20962 0.91648 1.06570 1.36645 0.91196 1.24890 0.96405 0.97103 0.95545 1.69893 1.03868 1.34234 1.44645 0.86324 0.77673 0.82056 0.80037 1.19909 1.21064 1.19926 1.46239 1.47663 1.12983 1.23336 1.18237 0.79159 0.83961 0.82237 1.90825 1.33248 1.81112 1.25483 1.20628 1.00394 0.95224 0.96904 1.20829 0.96164 0.89917 0.99720 1.21457 0.95522 0.99197 0.95213 1.21433 0.98638 0.96551 0.95283 1.20786 0.95396 0.90889 0.99357 1.20541 1.01815 0.94575 0.97208 1.18322 0.76883 0.86464 0.81534 1.90798 1.50102 1.67579 1.25212 0.91996 0.91545 0.93532 0.89121 0.88276 0.92123 0.92284 0.96679 0.88167 0.94295 0.92326 0.83943 0.84102 0.84130 0.84043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.03 37.15 0.34 -1.34 16 2 C -0.10 -1.52 2.36 -90.62 -0.21 -1.74 16 3 C -0.16 -2.38 8.67 37.16 0.32 -2.05 16 4 C 0.15 2.59 2.30 -69.08 -0.16 2.43 16 5 H 0.14 2.14 7.58 -51.93 -0.39 1.74 16 6 C 0.45 9.81 6.89 36.01 0.25 10.06 16 7 O -0.50 -12.52 14.16 -23.86 -0.34 -12.86 16 8 O -0.34 -8.00 6.78 -39.27 -0.27 -8.27 16 9 C 0.21 5.78 2.56 -27.88 -0.07 5.71 16 10 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 11 C -0.16 -3.99 9.33 37.15 0.35 -3.64 16 12 C -0.52 -14.48 8.90 -34.43 -0.31 -14.79 16 13 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 14 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 15 N -0.89 -25.44 11.32 55.43 0.63 -24.81 16 16 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 20 N -0.56 -9.07 1.54 -111.75 -0.17 -9.25 16 21 C 0.58 9.49 6.68 -12.46 -0.08 9.40 16 22 O -0.44 -8.48 15.58 -8.24 -0.13 -8.61 16 23 C -0.13 -1.62 6.41 -104.83 -0.67 -2.29 16 24 C -0.05 -0.44 10.09 -39.32 -0.40 -0.84 16 25 C -0.10 -0.60 10.04 -39.45 -0.40 -1.00 16 26 C -0.10 -0.61 10.04 -39.45 -0.40 -1.00 16 27 C -0.05 -0.38 10.09 -39.32 -0.40 -0.78 16 28 C -0.14 -1.65 6.41 -104.83 -0.67 -2.32 16 29 C 0.58 8.57 8.02 -12.46 -0.10 8.47 16 30 O -0.47 -7.51 17.43 5.41 0.09 -7.41 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.55 7.61 -51.92 -0.39 0.15 16 34 H 0.09 1.51 6.82 -51.93 -0.35 1.16 16 35 H 0.10 1.84 5.32 -51.93 -0.28 1.57 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.10 2.75 6.07 -51.93 -0.32 2.43 16 40 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.14 1.15 8.06 -52.48 -0.42 0.72 16 43 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 44 H 0.14 0.40 8.06 -52.49 -0.42 -0.03 16 45 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 378.54 15.07 5.70 5.70 Total: -1.00 -33.81 378.54 -8.08 -41.89 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.88 Total: 1.59 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -2.70 Total: 5.91 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 0.45 Total: -34.06 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -0.64 Total: -37.15 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.81 -8.08 -41.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.727 kcal (2) G-P(sol) polarization free energy of solvation -33.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds