Wall clock time and date at job start Wed Apr 1 2020 03:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47217 * 2 1 4 4 C 1.53002 * 109.47131 * 120.00243 * 2 1 3 5 5 H 1.09004 * 109.46592 * 299.99816 * 4 2 1 6 6 C 1.50700 * 109.47318 * 180.02562 * 4 2 1 7 7 O 1.20822 * 119.99958 * 239.99536 * 6 4 2 8 8 O 1.34234 * 120.00068 * 59.99727 * 6 4 2 9 9 C 1.45196 * 116.99938 * 179.97438 * 8 6 4 10 10 H 1.09004 * 109.47117 * 30.00246 * 9 8 6 11 11 C 1.52994 * 109.47482 * 269.99807 * 9 8 6 12 12 C 1.50707 * 109.46838 * 149.99799 * 9 8 6 13 13 H 1.07998 * 120.00336 * 0.02562 * 12 9 8 14 14 C 1.37884 * 119.99623 * 180.02562 * 12 9 8 15 15 N 1.31518 * 120.00031 * 359.97438 * 14 12 9 16 16 Si 1.86797 * 119.99709 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47178 * 60.00073 * 16 14 12 18 18 H 1.48497 * 109.46986 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47120 * 300.00007 * 16 14 12 20 20 N 1.46497 * 109.47495 * 59.99898 * 4 2 1 21 21 C 1.34517 * 124.45700 * 59.69905 * 20 4 2 22 22 O 1.21448 * 125.71174 * 0.03942 * 21 20 4 23 23 C 1.47823 * 108.58175 * 179.90814 * 21 20 4 24 24 C 1.38564 * 134.30315 * 180.09996 * 23 21 20 25 25 C 1.38609 * 119.72142 * 180.26976 * 24 23 21 26 26 C 1.38230 * 120.45903 * 0.02562 * 25 24 23 27 27 C 1.38611 * 120.45866 * 359.97438 * 26 25 24 28 28 C 1.38569 * 119.72313 * 0.02562 * 27 26 25 29 29 C 1.34524 * 124.46185 * 240.00349 * 20 4 2 30 30 O 1.21445 * 125.70750 * 359.96302 * 29 20 4 31 31 H 1.08993 * 109.47710 * 300.00191 * 1 2 3 32 32 H 1.09005 * 109.47052 * 60.00025 * 1 2 3 33 33 H 1.09008 * 109.47040 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47560 * 240.00083 * 2 1 3 35 35 H 1.09005 * 109.47175 * 179.97438 * 3 2 1 36 36 H 1.08997 * 109.47244 * 300.00235 * 3 2 1 37 37 H 1.09002 * 109.46787 * 59.99610 * 3 2 1 38 38 H 1.09002 * 109.47001 * 60.00056 * 11 9 8 39 39 H 1.08994 * 109.47774 * 180.02562 * 11 9 8 40 40 H 1.09004 * 109.47303 * 300.00325 * 11 9 8 41 41 H 0.96998 * 119.99390 * 180.02562 * 15 14 12 42 42 H 1.08006 * 120.13869 * 0.25215 * 24 23 21 43 43 H 1.07996 * 119.76971 * 180.02562 * 25 24 23 44 44 H 1.07997 * 119.76829 * 180.02562 * 26 25 24 45 45 H 1.07999 * 120.13997 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 3.5469 -0.7208 1.2496 7 8 4.1514 -1.7669 1.2496 8 8 4.2177 0.4419 1.2499 9 6 5.6677 0.3664 1.2508 10 1 5.9846 -0.5413 0.7372 11 6 6.1762 0.3401 2.6936 12 6 6.2338 1.5691 0.5406 13 1 5.5702 2.3157 0.1300 14 6 7.5990 1.7162 0.4150 15 7 8.4071 0.8072 0.9154 16 14 8.3006 3.2072 -0.4647 17 1 7.8695 4.4436 0.2359 18 1 9.7836 3.1299 -0.4639 19 1 7.8066 3.2338 -1.8648 20 7 1.5516 -2.1025 1.2493 21 6 1.8160 -3.0032 0.2858 22 8 2.4875 -2.8037 -0.7063 23 6 1.1551 -4.2777 0.6382 24 6 1.0784 -5.5256 0.0410 25 6 0.3487 -6.5349 0.6493 26 6 -0.3029 -6.3046 1.8465 27 6 -0.2351 -5.0613 2.4554 28 6 0.4907 -4.0427 1.8589 29 6 0.7750 -2.6353 2.2098 30 8 0.3743 -2.0566 3.1995 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.6765 1.9563 0.8900 38 1 5.7668 -0.5298 3.2072 39 1 7.2647 0.2838 2.6943 40 1 5.8593 1.2478 3.2072 41 1 9.3675 0.9110 0.8274 42 1 1.5850 -5.7111 -0.8947 43 1 0.2888 -7.5080 0.1848 44 1 -0.8680 -7.0991 2.3109 45 1 -0.7459 -4.8871 3.3909 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113689759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:12 Heat of formation + Delta-G solvation = -121.486377 kcal Electronic energy + Delta-G solvation = -31271.826783 eV Core-core repulsion = 27026.897591 eV Total energy + Delta-G solvation = -4244.929192 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.73226 -41.52342 -39.87112 -39.55843 -37.90893 -37.54365 -36.38960 -35.33192 -32.62059 -32.13920 -31.81541 -29.22788 -28.07216 -27.49496 -26.29077 -24.97844 -23.70793 -23.37504 -22.11650 -21.60955 -20.80126 -19.33208 -18.95408 -18.54811 -18.34934 -17.82569 -17.35985 -17.27333 -16.91867 -16.47878 -16.36665 -15.81423 -15.44425 -15.27469 -15.09397 -15.06172 -14.93038 -14.53060 -14.38389 -13.89878 -13.74418 -13.73196 -13.37176 -13.25684 -13.12669 -13.05482 -12.85355 -12.79135 -12.58179 -12.42184 -12.27257 -12.14305 -11.98982 -11.77441 -11.63226 -11.61607 -11.38941 -11.00607 -10.97998 -10.63078 -10.23607 -10.21989 -8.31534 -6.48714 -1.05121 -0.03156 0.83804 0.95102 1.04251 1.39742 1.44283 1.51342 1.58889 1.97222 2.36374 2.53505 2.62442 2.99405 3.12644 3.33790 3.53407 3.56979 3.58173 3.88681 4.05209 4.06508 4.17279 4.20138 4.27028 4.40733 4.44359 4.46324 4.69164 4.73266 4.74993 4.79848 4.83280 4.91146 4.93494 5.03318 5.04796 5.19461 5.20573 5.25652 5.40744 5.44055 5.52645 5.55755 5.69844 5.81200 5.97989 6.00817 6.38416 6.53942 6.76745 7.21934 8.76479 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017201 B = 0.003133 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.398334 B = 8935.912859 C = 9404.403519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.096 4.096 3 C -0.155 4.155 4 C 0.157 3.843 5 H 0.154 0.846 6 C 0.442 3.558 7 O -0.540 6.540 8 O -0.336 6.336 9 C 0.217 3.783 10 H 0.000 1.000 11 C -0.142 4.142 12 C -0.544 4.544 13 H 0.074 0.926 14 C 0.015 3.985 15 N -0.919 5.919 16 Si 0.985 3.015 17 H -0.260 1.260 18 H -0.278 1.278 19 H -0.268 1.268 20 N -0.568 5.568 21 C 0.568 3.432 22 O -0.488 6.488 23 C -0.159 4.159 24 C -0.050 4.050 25 C -0.078 4.078 26 C -0.079 4.079 27 C -0.039 4.039 28 C -0.158 4.158 29 C 0.576 3.424 30 O -0.486 6.486 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.017 0.983 39 H 0.082 0.918 40 H 0.050 0.950 41 H 0.271 0.729 42 H 0.148 0.852 43 H 0.184 0.816 44 H 0.188 0.812 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.007 -13.161 0.430 26.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.116 4.116 3 C -0.212 4.212 4 C 0.054 3.946 5 H 0.171 0.829 6 C 0.284 3.716 7 O -0.431 6.431 8 O -0.251 6.251 9 C 0.164 3.836 10 H 0.018 0.982 11 C -0.200 4.200 12 C -0.582 4.582 13 H 0.092 0.908 14 C -0.185 4.185 15 N -0.557 5.557 16 Si 0.807 3.193 17 H -0.185 1.185 18 H -0.203 1.203 19 H -0.193 1.193 20 N -0.310 5.310 21 C 0.359 3.641 22 O -0.360 6.360 23 C -0.162 4.162 24 C -0.069 4.069 25 C -0.096 4.096 26 C -0.097 4.097 27 C -0.057 4.057 28 C -0.161 4.161 29 C 0.367 3.633 30 O -0.359 6.359 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.036 0.964 39 H 0.101 0.899 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.166 0.834 43 H 0.201 0.799 44 H 0.205 0.795 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -22.401 -12.983 0.460 25.895 hybrid contribution 1.486 0.743 -0.304 1.689 sum -20.915 -12.241 0.155 24.234 Atomic orbital electron populations 1.21759 0.90955 1.01813 1.04380 1.21419 0.98821 0.97520 0.93794 1.22022 1.02513 0.92887 1.03757 1.21109 0.86361 0.81414 1.05736 0.82916 1.24121 0.92319 0.82894 0.72239 1.90601 1.71227 1.34453 1.46796 1.86561 1.25037 1.31951 1.81587 1.20406 0.70956 0.97333 0.94874 0.98195 1.21993 1.03683 0.98243 0.96033 1.21248 0.92447 1.06883 1.37583 0.90817 1.25882 0.96471 1.00211 0.95932 1.70026 1.04274 1.36055 1.45350 0.85207 0.76964 0.78265 0.78843 1.18480 1.20335 1.19305 1.46404 1.47900 1.12624 1.24048 1.18996 0.78303 0.85443 0.81357 1.90779 1.35708 1.82157 1.27347 1.20494 1.02381 0.94957 0.98385 1.21171 0.96362 0.89289 1.00057 1.21976 0.93073 0.99688 0.94842 1.22011 0.97041 0.96248 0.94390 1.21225 0.93935 0.90712 0.99840 1.20449 1.04311 0.93584 0.97759 1.18843 0.75989 0.87732 0.80698 1.90768 1.51002 1.68393 1.25764 0.90594 0.89458 0.93754 0.91545 0.92314 0.89888 0.90573 0.96434 0.89918 0.93053 0.92001 0.83439 0.79885 0.79462 0.81999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 9.03 71.98 0.65 -2.34 16 2 C -0.10 -2.98 2.36 -10.79 -0.03 -3.00 16 3 C -0.15 -4.67 8.67 71.98 0.62 -4.05 16 4 C 0.16 5.63 2.30 44.25 0.10 5.73 16 5 H 0.15 4.91 7.58 -2.38 -0.02 4.89 16 6 C 0.44 20.72 6.89 71.24 0.49 21.22 16 7 O -0.54 -29.11 14.16 26.87 0.38 -28.73 16 8 O -0.34 -16.78 6.78 -51.46 -0.35 -17.13 16 9 C 0.22 12.46 2.56 29.85 0.08 12.53 16 10 H 0.00 0.01 7.16 -2.39 -0.02 0.00 16 11 C -0.14 -7.64 9.33 71.98 0.67 -6.97 16 12 C -0.54 -31.44 8.90 25.60 0.23 -31.21 16 13 H 0.07 4.09 7.81 -2.91 -0.02 4.07 16 14 C 0.01 0.82 5.30 84.66 0.45 1.27 16 15 N -0.92 -54.29 11.32 21.45 0.24 -54.04 16 16 Si 0.98 43.65 29.54 68.60 2.03 45.67 16 17 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 18 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 20 N -0.57 -19.41 1.54 -744.39 -1.15 -20.56 16 21 C 0.57 20.03 6.68 86.82 0.58 20.61 16 22 O -0.49 -20.66 15.58 9.50 0.15 -20.52 16 23 C -0.16 -4.07 6.41 -20.00 -0.13 -4.20 16 24 C -0.05 -0.85 10.09 22.44 0.23 -0.63 16 25 C -0.08 -0.63 10.04 22.36 0.22 -0.40 16 26 C -0.08 -0.53 10.04 22.36 0.22 -0.30 16 27 C -0.04 -0.52 10.09 22.44 0.23 -0.29 16 28 C -0.16 -3.67 6.41 -20.00 -0.13 -3.80 16 29 C 0.58 17.44 8.02 86.82 0.70 18.13 16 30 O -0.49 -15.81 17.43 -3.54 -0.06 -15.87 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.04 1.03 7.61 -2.38 -0.02 1.01 16 34 H 0.07 2.39 6.82 -2.39 -0.02 2.37 16 35 H 0.06 2.29 5.32 -2.38 -0.01 2.28 16 36 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 4.75 6.07 -2.39 -0.01 4.74 16 40 H 0.05 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 42 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 43 H 0.18 0.01 8.06 -2.91 -0.02 -0.01 16 44 H 0.19 -0.36 8.06 -2.91 -0.02 -0.38 16 45 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -81.21 378.54 7.45 -73.76 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 1.02 Total: 15.12 kcal Atomic # 6 Polarization: 17.11 SS G_CDS: 5.19 Total: 22.30 kcal Atomic # 7 Polarization: -73.70 SS G_CDS: -0.91 Total: -74.60 kcal Atomic # 8 Polarization: -82.37 SS G_CDS: 0.12 Total: -82.25 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -81.21 7.45 -73.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.724 kcal (2) G-P(sol) polarization free energy of solvation -81.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds