Wall clock time and date at job start Wed Apr 1 2020 03:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47560 * 2 1 4 4 C 1.53004 * 109.47161 * 239.99820 * 2 1 3 5 5 C 1.53001 * 109.47100 * 175.00238 * 4 2 1 6 6 H 1.08999 * 109.47296 * 54.99683 * 5 4 2 7 7 O 1.42903 * 109.46749 * 294.99586 * 5 4 2 8 8 C 1.50700 * 109.47011 * 175.00022 * 5 4 2 9 9 C 1.34515 * 125.79038 * 264.71514 * 8 5 4 10 10 C 1.41379 * 106.84016 * 179.89257 * 9 8 5 11 11 C 1.34510 * 106.84078 * 0.36531 * 10 9 8 12 12 O 1.34299 * 108.42219 * 359.77987 * 11 10 9 13 13 N 1.46509 * 109.47521 * 119.99890 * 2 1 3 14 14 C 1.34777 * 119.99506 * 275.00082 * 13 2 1 15 15 O 1.21585 * 120.00380 * 359.97438 * 14 13 2 16 16 C 1.47539 * 119.99337 * 179.97438 * 14 13 2 17 17 C 1.39657 * 120.19980 * 0.02562 * 16 14 13 18 18 C 1.37830 * 119.92120 * 179.74313 * 17 16 14 19 19 C 1.38576 * 120.32336 * 0.27927 * 18 17 16 20 20 C 1.38028 * 120.39639 * 359.97438 * 19 18 17 21 21 C 1.38833 * 120.07673 * 359.96058 * 20 19 18 22 22 O 1.35520 * 120.16404 * 180.02562 * 21 20 19 23 23 C 1.34817 * 116.99599 * 354.40185 * 22 21 20 24 24 H 1.07998 * 120.00609 * 5.05910 * 23 22 21 25 25 C 1.38699 * 119.99815 * 185.06783 * 23 22 21 26 26 N 1.31520 * 120.00091 * 359.97438 * 25 23 22 27 27 Si 1.86805 * 120.00341 * 179.97438 * 25 23 22 28 28 H 1.48508 * 109.46721 * 59.99562 * 27 25 23 29 29 H 1.48490 * 109.47214 * 179.97438 * 27 25 23 30 30 H 1.48500 * 109.47015 * 300.00007 * 27 25 23 31 31 H 1.09007 * 109.46998 * 299.99923 * 1 2 3 32 32 H 1.08994 * 109.47449 * 60.00166 * 1 2 3 33 33 H 1.08998 * 109.46867 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47120 * 294.99617 * 4 2 1 35 35 H 1.08996 * 109.46840 * 54.99975 * 4 2 1 36 36 H 0.96694 * 114.00170 * 300.00305 * 7 5 4 37 37 H 1.07999 * 126.57550 * 0.02562 * 9 8 5 38 38 H 1.08005 * 126.57794 * 180.16942 * 10 9 8 39 39 H 1.08008 * 125.78828 * 179.75438 * 11 10 9 40 40 H 0.96997 * 119.99883 * 94.99275 * 13 2 1 41 41 H 1.08001 * 120.04270 * 0.02562 * 17 16 14 42 42 H 1.07996 * 119.83927 * 180.24945 * 18 17 16 43 43 H 1.07994 * 119.80112 * 179.97438 * 19 18 17 44 44 H 1.08001 * 119.95760 * 179.97438 * 20 19 18 45 45 H 0.96996 * 120.00027 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 1 3.9954 -0.9923 -0.3868 7 8 3.9385 0.7549 -1.4881 8 6 4.0773 -1.4260 -2.4747 9 6 4.5277 -2.6919 -2.4109 10 6 4.9032 -3.0597 -3.7234 11 6 4.6673 -1.9938 -4.5093 12 8 4.1672 -1.0072 -3.7476 13 7 2.0184 -0.6906 1.1962 14 6 2.1471 -0.0181 2.3571 15 8 1.8583 1.1617 2.4116 16 6 2.6385 -0.7138 3.5619 17 6 2.9719 -2.0687 3.5038 18 6 3.4354 -2.7116 4.6315 19 6 3.5672 -2.0215 5.8259 20 6 3.2366 -0.6834 5.8995 21 6 2.7694 -0.0191 4.7735 22 8 2.4447 1.2947 4.8436 23 6 2.4871 1.8714 6.0615 24 1 2.8484 1.3120 6.9117 25 6 2.0664 3.1832 6.2227 26 7 1.6266 3.8647 5.1873 27 14 2.1244 3.9821 7.9102 28 1 3.5242 3.9907 8.4059 29 1 1.6249 5.3773 7.8148 30 1 1.2707 3.2135 8.8514 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.7517 -1.7716 -1.2055 35 1 1.6053 -0.2618 -2.1369 36 1 3.5895 1.1581 -2.2947 37 1 4.5887 -3.3095 -1.5271 38 1 5.3054 -4.0124 -4.0347 39 1 4.8496 -1.9403 -5.5725 40 1 2.2490 -1.6318 1.1527 41 1 2.8710 -2.6111 2.5754 42 1 3.6966 -3.7584 4.5841 43 1 3.9308 -2.5336 6.7044 44 1 3.3417 -0.1525 6.8342 45 1 1.3328 4.7822 5.2999 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123710139.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:17 Heat of formation + Delta-G solvation = -68.581851 kcal Electronic energy + Delta-G solvation = -29924.116438 eV Core-core repulsion = 25681.481359 eV Total energy + Delta-G solvation = -4242.635079 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.83100 -39.69517 -38.58388 -37.44208 -36.31109 -35.02972 -33.31570 -32.32234 -31.84050 -30.93633 -29.60093 -28.88591 -27.96548 -25.36963 -24.13010 -23.20887 -22.01476 -21.66342 -20.73591 -20.70760 -19.86530 -18.26283 -17.98785 -17.54293 -16.51983 -16.24289 -16.11163 -15.71091 -15.20287 -15.08481 -14.64325 -14.34466 -14.15602 -14.08875 -13.80183 -13.46524 -13.30364 -13.09298 -13.08355 -12.85096 -12.75367 -12.47831 -12.10435 -11.98913 -11.77677 -11.69102 -11.63895 -11.30051 -11.11203 -10.88062 -10.82777 -10.73036 -10.46060 -10.38946 -10.15679 -9.54142 -8.85228 -8.79054 -8.75860 -8.50219 -8.24807 -7.28358 -6.41584 -4.01589 1.45613 1.74678 2.34184 2.36032 2.67634 3.13519 3.15530 3.18007 3.68792 3.79632 3.95852 4.19475 4.25819 4.63212 4.69514 4.74276 4.83006 4.94830 5.00275 5.09531 5.19939 5.38168 5.47556 5.52950 5.54641 5.55906 5.61580 5.69107 5.73899 5.75586 5.82840 5.88276 6.04816 6.14099 6.22501 6.33198 6.44049 6.58428 6.71935 6.84107 6.93317 7.02669 7.08202 7.26355 7.31448 7.43536 7.71771 7.94746 8.16488 8.97828 9.16162 9.70423 10.72071 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014323 B = 0.002716 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.428654 B =10308.571443 C =11326.482023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.149 3.851 3 H 0.097 0.903 4 C -0.155 4.155 5 C 0.192 3.808 6 H 0.129 0.871 7 O -0.542 6.542 8 C -0.040 4.040 9 C -0.205 4.205 10 C -0.213 4.213 11 C -0.044 4.044 12 O -0.173 6.173 13 N -0.741 5.741 14 C 0.556 3.444 15 O -0.497 6.497 16 C -0.226 4.226 17 C -0.039 4.039 18 C -0.232 4.232 19 C -0.051 4.051 20 C -0.238 4.238 21 C 0.189 3.811 22 O -0.123 6.123 23 C -0.404 4.404 24 H 0.093 0.907 25 C 0.045 3.955 26 N -0.832 5.832 27 Si 0.940 3.060 28 H -0.269 1.269 29 H -0.277 1.277 30 H -0.269 1.269 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.378 0.622 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.202 0.798 40 H 0.388 0.612 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.131 0.869 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.641 -13.752 -15.351 20.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.045 3.955 3 H 0.115 0.885 4 C -0.193 4.193 5 C 0.133 3.867 6 H 0.146 0.854 7 O -0.346 6.346 8 C -0.091 4.091 9 C -0.224 4.224 10 C -0.232 4.232 11 C -0.111 4.111 12 O -0.069 6.069 13 N -0.397 5.397 14 C 0.345 3.655 15 O -0.370 6.370 16 C -0.231 4.231 17 C -0.058 4.058 18 C -0.251 4.251 19 C -0.070 4.070 20 C -0.257 4.257 21 C 0.129 3.871 22 O -0.021 6.021 23 C -0.480 4.480 24 H 0.110 0.890 25 C -0.163 4.163 26 N -0.463 5.463 27 Si 0.764 3.236 28 H -0.194 1.194 29 H -0.202 1.202 30 H -0.194 1.194 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.226 0.774 37 H 0.168 0.832 38 H 0.166 0.834 39 H 0.219 0.781 40 H 0.223 0.777 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.149 0.851 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.462 -12.181 -15.065 19.530 hybrid contribution 0.042 -0.615 0.257 0.668 sum 2.504 -12.797 -14.808 19.731 Atomic orbital electron populations 1.22177 0.95501 1.01696 1.02719 1.20729 0.93682 0.98223 0.82909 0.88463 1.22660 0.94679 1.02620 0.99379 1.20600 0.93704 0.80617 0.91813 0.85382 1.86713 1.76966 1.23511 1.47422 1.23572 1.05038 0.96085 0.84409 1.21633 1.05852 0.96001 0.98925 1.21850 1.07249 1.00698 0.93409 1.24055 1.02946 0.86833 0.97302 1.83975 1.64854 1.40082 1.18015 1.45990 1.70667 1.13308 1.09720 1.18198 0.78009 0.86783 0.82473 1.90947 1.47469 1.14678 1.83933 1.18871 1.17072 0.94157 0.93022 1.20735 0.95391 0.92271 0.97397 1.20448 1.11397 0.99474 0.93748 1.20887 0.95542 0.93693 0.96882 1.21157 1.09478 0.95559 0.99549 1.19284 0.90709 0.85118 0.91976 1.84177 1.70541 1.15818 1.31517 1.21442 1.45255 0.96751 0.84550 0.88968 1.25375 0.95810 0.95644 0.99450 1.70118 1.36351 1.10199 1.29655 0.85810 0.79084 0.78459 0.80233 1.19379 1.20170 1.19395 0.91345 0.92216 0.92878 0.90048 0.89779 0.77411 0.83220 0.83408 0.78126 0.77731 0.87175 0.87362 0.87254 0.85131 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.48 37.15 0.35 -1.78 16 2 C 0.15 2.05 2.53 -67.93 -0.17 1.88 16 3 H 0.10 1.65 7.13 -51.93 -0.37 1.28 16 4 C -0.16 -1.52 4.41 -26.73 -0.12 -1.64 16 5 C 0.19 2.13 3.37 -27.88 -0.09 2.03 16 6 H 0.13 1.50 7.62 -51.93 -0.40 1.11 16 7 O -0.54 -6.98 12.77 -40.03 -0.51 -7.50 16 8 C -0.04 -0.43 6.20 -35.62 -0.22 -0.65 16 9 C -0.20 -2.02 10.81 -39.70 -0.43 -2.45 16 10 C -0.21 -1.85 10.91 -39.71 -0.43 -2.28 16 11 C -0.04 -0.36 12.09 29.41 0.36 -0.01 16 12 O -0.17 -1.81 10.52 0.92 0.01 -1.80 16 13 N -0.74 -11.39 4.40 -54.84 -0.24 -11.63 16 14 C 0.56 12.01 7.73 -12.47 -0.10 11.91 16 15 O -0.50 -13.47 14.83 -16.56 -0.25 -13.72 16 16 C -0.23 -4.88 5.89 -104.81 -0.62 -5.49 16 17 C -0.04 -0.66 9.53 -39.20 -0.37 -1.03 16 18 C -0.23 -3.77 10.03 -39.61 -0.40 -4.16 16 19 C -0.05 -0.91 10.03 -39.53 -0.40 -1.31 16 20 C -0.24 -5.14 9.16 -39.44 -0.36 -5.50 16 21 C 0.19 4.70 6.66 -38.60 -0.26 4.44 16 22 O -0.12 -3.63 7.84 -21.06 -0.17 -3.79 16 23 C -0.40 -11.50 9.49 30.90 0.29 -11.21 16 24 H 0.09 2.38 5.21 -52.49 -0.27 2.10 16 25 C 0.05 1.27 5.49 -17.51 -0.10 1.17 16 26 N -0.83 -25.23 13.67 55.48 0.76 -24.47 16 27 Si 0.94 20.66 29.55 -169.99 -5.02 15.64 16 28 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 29 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 30 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.38 3.53 8.93 45.56 0.41 3.94 16 37 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 39 H 0.20 0.89 8.06 -52.48 -0.42 0.47 16 40 H 0.39 4.69 6.63 -40.82 -0.27 4.42 16 41 H 0.11 1.39 6.40 -52.49 -0.34 1.06 16 42 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.13 2.78 5.64 -52.49 -0.30 2.49 16 45 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 385.57 15.07 5.81 5.81 Total: -1.00 -36.87 385.57 -7.57 -44.44 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -4.90 Total: 13.11 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -3.06 Total: -16.08 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.52 Total: -36.11 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.91 Total: -26.81 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.87 -7.57 -44.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123710139.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.141 kcal (2) G-P(sol) polarization free energy of solvation -36.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds