Wall clock time and date at job start Wed Apr 1 2020 03:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47560 * 2 1 4 4 C 1.53004 * 109.47161 * 239.99820 * 2 1 3 5 5 C 1.53001 * 109.47100 * 175.00238 * 4 2 1 6 6 H 1.08999 * 109.47296 * 54.99683 * 5 4 2 7 7 O 1.42903 * 109.46749 * 294.99586 * 5 4 2 8 8 C 1.50700 * 109.47011 * 175.00022 * 5 4 2 9 9 C 1.34515 * 125.79038 * 264.71514 * 8 5 4 10 10 C 1.41379 * 106.84016 * 179.89257 * 9 8 5 11 11 C 1.34510 * 106.84078 * 0.36531 * 10 9 8 12 12 O 1.34299 * 108.42219 * 359.77987 * 11 10 9 13 13 N 1.46509 * 109.47521 * 119.99890 * 2 1 3 14 14 C 1.34777 * 119.99506 * 275.00082 * 13 2 1 15 15 O 1.21585 * 120.00380 * 359.97438 * 14 13 2 16 16 C 1.47539 * 119.99337 * 179.97438 * 14 13 2 17 17 C 1.39657 * 120.19980 * 0.02562 * 16 14 13 18 18 C 1.37830 * 119.92120 * 179.74313 * 17 16 14 19 19 C 1.38576 * 120.32336 * 0.27927 * 18 17 16 20 20 C 1.38028 * 120.39639 * 359.97438 * 19 18 17 21 21 C 1.38833 * 120.07673 * 359.96058 * 20 19 18 22 22 O 1.35520 * 120.16404 * 180.02562 * 21 20 19 23 23 C 1.34817 * 116.99599 * 354.40185 * 22 21 20 24 24 H 1.07998 * 120.00609 * 5.05910 * 23 22 21 25 25 C 1.38699 * 119.99815 * 185.06783 * 23 22 21 26 26 N 1.31520 * 120.00091 * 359.97438 * 25 23 22 27 27 Si 1.86805 * 120.00341 * 179.97438 * 25 23 22 28 28 H 1.48508 * 109.46721 * 59.99562 * 27 25 23 29 29 H 1.48490 * 109.47214 * 179.97438 * 27 25 23 30 30 H 1.48500 * 109.47015 * 300.00007 * 27 25 23 31 31 H 1.09007 * 109.46998 * 299.99923 * 1 2 3 32 32 H 1.08994 * 109.47449 * 60.00166 * 1 2 3 33 33 H 1.08998 * 109.46867 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47120 * 294.99617 * 4 2 1 35 35 H 1.08996 * 109.46840 * 54.99975 * 4 2 1 36 36 H 0.96694 * 114.00170 * 300.00305 * 7 5 4 37 37 H 1.07999 * 126.57550 * 0.02562 * 9 8 5 38 38 H 1.08005 * 126.57794 * 180.16942 * 10 9 8 39 39 H 1.08008 * 125.78828 * 179.75438 * 11 10 9 40 40 H 0.96997 * 119.99883 * 94.99275 * 13 2 1 41 41 H 1.08001 * 120.04270 * 0.02562 * 17 16 14 42 42 H 1.07996 * 119.83927 * 180.24945 * 18 17 16 43 43 H 1.07994 * 119.80112 * 179.97438 * 19 18 17 44 44 H 1.08001 * 119.95760 * 179.97438 * 20 19 18 45 45 H 0.96996 * 120.00027 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 1 3.9954 -0.9923 -0.3868 7 8 3.9385 0.7549 -1.4881 8 6 4.0773 -1.4260 -2.4747 9 6 4.5277 -2.6919 -2.4109 10 6 4.9032 -3.0597 -3.7234 11 6 4.6673 -1.9938 -4.5093 12 8 4.1672 -1.0072 -3.7476 13 7 2.0184 -0.6906 1.1962 14 6 2.1471 -0.0181 2.3571 15 8 1.8583 1.1617 2.4116 16 6 2.6385 -0.7138 3.5619 17 6 2.9719 -2.0687 3.5038 18 6 3.4354 -2.7116 4.6315 19 6 3.5672 -2.0215 5.8259 20 6 3.2366 -0.6834 5.8995 21 6 2.7694 -0.0191 4.7735 22 8 2.4447 1.2947 4.8436 23 6 2.4871 1.8714 6.0615 24 1 2.8484 1.3120 6.9117 25 6 2.0664 3.1832 6.2227 26 7 1.6266 3.8647 5.1873 27 14 2.1244 3.9821 7.9102 28 1 3.5242 3.9907 8.4059 29 1 1.6249 5.3773 7.8148 30 1 1.2707 3.2135 8.8514 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.7517 -1.7716 -1.2055 35 1 1.6053 -0.2618 -2.1369 36 1 3.5895 1.1581 -2.2947 37 1 4.5887 -3.3095 -1.5271 38 1 5.3054 -4.0124 -4.0347 39 1 4.8496 -1.9403 -5.5725 40 1 2.2490 -1.6318 1.1527 41 1 2.8710 -2.6111 2.5754 42 1 3.6966 -3.7584 4.5841 43 1 3.9308 -2.5336 6.7044 44 1 3.3417 -0.1525 6.8342 45 1 1.3328 4.7822 5.2999 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123710139.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:17 Heat of formation + Delta-G solvation = -96.114739 kcal Electronic energy + Delta-G solvation = -29925.310354 eV Core-core repulsion = 25681.481359 eV Total energy + Delta-G solvation = -4243.828995 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.51839 -41.31435 -40.07559 -38.68595 -37.99176 -36.37641 -34.31813 -34.02471 -33.21539 -31.95431 -30.92898 -30.53371 -28.82312 -27.36472 -25.24404 -24.52935 -23.24857 -22.68557 -22.01675 -21.46085 -21.40047 -19.82316 -19.33535 -18.87248 -17.90313 -17.40874 -17.00986 -16.83999 -16.35560 -16.30874 -16.15463 -15.83407 -15.72045 -15.70221 -15.32505 -15.00844 -14.47155 -14.33127 -14.20273 -14.04434 -13.73406 -13.54188 -13.43118 -13.41714 -12.96561 -12.90226 -12.82566 -12.67477 -12.58465 -12.49022 -12.34519 -12.14732 -11.86440 -11.40002 -11.31998 -10.83843 -10.81433 -10.54291 -10.06953 -9.76250 -9.39042 -9.01243 -8.43164 -6.14213 0.15988 0.75123 0.76641 1.31879 1.45081 1.49917 1.70621 2.00653 2.16179 2.16877 2.32091 2.89715 3.25376 3.39483 3.44160 3.49582 3.79607 3.95812 4.03679 4.09309 4.11535 4.17010 4.29785 4.31592 4.41063 4.46141 4.54424 4.65650 4.72392 4.79174 4.87764 4.92922 4.99533 5.04355 5.07987 5.12401 5.18205 5.20357 5.28952 5.50389 5.60700 5.63600 5.67747 5.71644 5.97440 6.16256 6.19506 6.65815 6.76925 6.95929 7.57643 7.82630 8.77191 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014323 B = 0.002716 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.428654 B =10308.571443 C =11326.482023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.148 3.852 3 H 0.056 0.944 4 C -0.136 4.136 5 C 0.193 3.807 6 H 0.118 0.882 7 O -0.571 6.571 8 C -0.061 4.061 9 C -0.209 4.209 10 C -0.227 4.227 11 C -0.043 4.043 12 O -0.188 6.188 13 N -0.713 5.713 14 C 0.549 3.451 15 O -0.566 6.566 16 C -0.244 4.244 17 C -0.030 4.030 18 C -0.201 4.201 19 C -0.042 4.042 20 C -0.259 4.259 21 C 0.147 3.853 22 O -0.188 6.188 23 C -0.428 4.428 24 H 0.106 0.894 25 C -0.023 4.023 26 N -0.905 5.905 27 Si 1.021 2.979 28 H -0.254 1.254 29 H -0.273 1.273 30 H -0.254 1.254 31 H 0.021 0.979 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.390 0.610 37 H 0.164 0.836 38 H 0.169 0.831 39 H 0.236 0.764 40 H 0.409 0.591 41 H 0.162 0.838 42 H 0.164 0.836 43 H 0.152 0.848 44 H 0.121 0.879 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.756 -19.060 -16.319 25.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.043 3.957 3 H 0.074 0.926 4 C -0.174 4.174 5 C 0.134 3.866 6 H 0.136 0.864 7 O -0.378 6.378 8 C -0.111 4.111 9 C -0.228 4.228 10 C -0.245 4.245 11 C -0.109 4.109 12 O -0.085 6.085 13 N -0.368 5.368 14 C 0.339 3.661 15 O -0.445 6.445 16 C -0.249 4.249 17 C -0.048 4.048 18 C -0.219 4.219 19 C -0.060 4.060 20 C -0.279 4.279 21 C 0.092 3.908 22 O -0.091 6.091 23 C -0.504 4.504 24 H 0.123 0.877 25 C -0.222 4.222 26 N -0.541 5.541 27 Si 0.839 3.161 28 H -0.178 1.178 29 H -0.198 1.198 30 H -0.178 1.178 31 H 0.040 0.960 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.128 0.872 35 H 0.120 0.880 36 H 0.240 0.760 37 H 0.182 0.818 38 H 0.187 0.813 39 H 0.252 0.748 40 H 0.247 0.753 41 H 0.180 0.820 42 H 0.182 0.818 43 H 0.170 0.830 44 H 0.139 0.861 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.603 -17.626 -16.072 24.124 hybrid contribution -0.167 0.529 0.331 0.646 sum 3.436 -17.097 -15.741 23.492 Atomic orbital electron populations 1.22120 0.94774 1.03003 1.01618 1.20810 0.94218 0.96809 0.83860 0.92565 1.22532 0.93882 1.03678 0.97339 1.20533 0.94258 0.79816 0.92031 0.86437 1.86670 1.77615 1.24955 1.48529 1.23370 1.06848 0.96399 0.84464 1.21964 1.04956 0.95779 1.00080 1.22198 1.07531 1.01825 0.92982 1.24836 1.01352 0.86120 0.98627 1.83965 1.65333 1.41052 1.18148 1.45712 1.68703 1.13976 1.08438 1.18490 0.77343 0.86136 0.84107 1.90931 1.50583 1.17810 1.85160 1.19359 1.17223 0.96274 0.92048 1.21310 0.93293 0.89988 1.00205 1.21177 1.06929 1.01677 0.92115 1.21424 0.93390 0.91808 0.99370 1.21298 1.10650 0.97588 0.98333 1.20124 0.91437 0.84715 0.94539 1.84185 1.74537 1.18346 1.32027 1.21985 1.45667 0.97545 0.85211 0.87703 1.26756 0.95167 0.96052 1.04198 1.70322 1.40306 1.10675 1.32808 0.84639 0.79872 0.77183 0.74359 1.17843 1.19795 1.17782 0.95955 0.89891 0.90199 0.87234 0.87976 0.76031 0.81836 0.81322 0.74808 0.75265 0.82019 0.81799 0.82995 0.86089 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 9.48 71.98 0.68 -3.44 16 2 C 0.15 4.09 2.53 44.99 0.11 4.20 16 3 H 0.06 2.07 7.13 -2.39 -0.02 2.05 16 4 C -0.14 -2.41 4.41 30.60 0.14 -2.27 16 5 C 0.19 4.07 3.37 29.85 0.10 4.17 16 6 H 0.12 2.63 7.62 -2.39 -0.02 2.62 16 7 O -0.57 -15.17 12.77 -144.39 -1.84 -17.01 16 8 C -0.06 -1.17 6.20 24.83 0.15 -1.02 16 9 C -0.21 -3.51 10.81 22.19 0.24 -3.27 16 10 C -0.23 -3.21 10.91 22.19 0.24 -2.97 16 11 C -0.04 -0.58 12.09 66.97 0.81 0.23 16 12 O -0.19 -3.57 10.52 2.15 0.02 -3.55 16 13 N -0.71 -21.68 4.40 -445.68 -1.96 -23.64 16 14 C 0.55 24.93 7.73 86.70 0.67 25.60 16 15 O -0.57 -33.79 14.83 16.91 0.25 -33.54 16 16 C -0.24 -10.64 5.89 -19.99 -0.12 -10.76 16 17 C -0.03 -0.88 9.53 22.52 0.21 -0.66 16 18 C -0.20 -5.30 10.03 22.25 0.22 -5.08 16 19 C -0.04 -1.31 10.03 22.30 0.22 -1.09 16 20 C -0.26 -11.26 9.16 22.36 0.20 -11.06 16 21 C 0.15 7.69 6.66 22.91 0.15 7.84 16 22 O -0.19 -12.20 7.84 0.81 0.01 -12.19 16 23 C -0.43 -26.38 9.49 67.93 0.64 -25.73 16 24 H 0.11 5.79 5.21 -2.91 -0.02 5.78 16 25 C -0.02 -1.37 5.49 84.85 0.47 -0.90 16 26 N -0.91 -60.26 13.67 21.62 0.30 -59.96 16 27 Si 1.02 45.04 29.55 68.60 2.03 47.06 16 28 H -0.25 -10.42 7.11 99.48 0.71 -9.71 16 29 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 30 H -0.25 -10.36 7.11 99.48 0.71 -9.66 16 31 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.39 7.57 8.93 -74.06 -0.66 6.91 16 37 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 38 H 0.17 1.56 8.06 -2.91 -0.02 1.53 16 39 H 0.24 1.23 8.06 -2.91 -0.02 1.20 16 40 H 0.41 8.65 6.63 -92.71 -0.61 8.04 16 41 H 0.16 3.06 6.40 -2.91 -0.02 3.04 16 42 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 43 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 44 H 0.12 5.35 5.64 -2.91 -0.02 5.33 16 45 H 0.27 16.51 8.31 -92.71 -0.77 15.74 16 Total: -1.00 -95.55 385.57 3.73 -91.82 By element: Atomic # 1 Polarization: 37.46 SS G_CDS: -0.23 Total: 37.23 kcal Atomic # 6 Polarization: -31.37 SS G_CDS: 5.16 Total: -26.21 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -1.66 Total: -83.61 kcal Atomic # 8 Polarization: -64.73 SS G_CDS: -1.56 Total: -66.30 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -95.55 3.73 -91.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123710139.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.297 kcal (2) G-P(sol) polarization free energy of solvation -95.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds