Wall clock time and date at job start Wed Apr 1 2020 03:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46992 * 2 1 4 4 C 1.52991 * 109.47044 * 119.99974 * 2 1 3 5 5 C 1.53004 * 109.47007 * 185.00119 * 4 2 1 6 6 H 1.09000 * 109.47271 * 304.99991 * 5 4 2 7 7 O 1.42905 * 109.47081 * 65.00218 * 5 4 2 8 8 C 1.50707 * 109.47046 * 184.99944 * 5 4 2 9 9 C 1.34514 * 125.78737 * 99.99997 * 8 5 4 10 10 C 1.41379 * 106.83926 * 179.97438 * 9 8 5 11 11 C 1.34512 * 106.84076 * 0.02562 * 10 9 8 12 12 O 1.34295 * 125.79142 * 279.69132 * 8 5 4 13 13 N 1.46498 * 109.47270 * 240.00154 * 2 1 3 14 14 C 1.34780 * 119.99715 * 84.99664 * 13 2 1 15 15 O 1.21584 * 120.00344 * 0.02562 * 14 13 2 16 16 C 1.47542 * 119.99606 * 179.97438 * 14 13 2 17 17 C 1.39663 * 120.19563 * 0.02562 * 16 14 13 18 18 C 1.37837 * 119.91775 * 179.97438 * 17 16 14 19 19 C 1.38574 * 120.32020 * 359.97438 * 18 17 16 20 20 C 1.38026 * 120.40344 * 359.97438 * 19 18 17 21 21 C 1.38829 * 120.07257 * 0.02562 * 20 19 18 22 22 O 1.35522 * 120.15989 * 179.97438 * 21 20 19 23 23 C 1.34812 * 117.00136 * 354.39845 * 22 21 20 24 24 H 1.07998 * 119.99529 * 5.06496 * 23 22 21 25 25 C 1.38692 * 120.00205 * 185.06446 * 23 22 21 26 26 N 1.31514 * 120.00382 * 179.97438 * 25 23 22 27 27 Si 1.86810 * 119.99786 * 0.02562 * 25 23 22 28 28 H 1.48504 * 109.46951 * 90.00022 * 27 25 23 29 29 H 1.48500 * 109.46957 * 209.99559 * 27 25 23 30 30 H 1.48493 * 109.47297 * 329.99896 * 27 25 23 31 31 H 1.08999 * 109.46866 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47335 * 299.99935 * 1 2 3 33 33 H 1.08999 * 109.46983 * 60.00022 * 1 2 3 34 34 H 1.09002 * 109.47839 * 305.00017 * 4 2 1 35 35 H 1.09001 * 109.47489 * 65.00749 * 4 2 1 36 36 H 0.96694 * 113.99723 * 60.00048 * 7 5 4 37 37 H 1.07999 * 126.57972 * 359.96573 * 9 8 5 38 38 H 1.07999 * 126.57788 * 180.02562 * 10 9 8 39 39 H 1.08003 * 125.78658 * 180.02562 * 11 10 9 40 40 H 0.96993 * 120.00322 * 264.99994 * 13 2 1 41 41 H 1.07996 * 120.04374 * 359.95841 * 17 16 14 42 42 H 1.07993 * 119.83964 * 179.97438 * 18 17 16 43 43 H 1.08001 * 119.79401 * 180.02562 * 19 18 17 44 44 H 1.07999 * 119.96323 * 179.74829 * 20 19 18 45 45 H 0.97002 * 120.00488 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3136 6 1 3.9954 -0.9922 0.3868 7 8 3.9385 0.7550 1.4881 8 6 4.0773 -1.4258 2.4748 9 6 4.6102 -2.6585 2.3978 10 6 4.9539 -3.0391 3.7153 11 6 4.6099 -2.0165 4.5186 12 8 4.0848 -1.0398 3.7610 13 7 2.0184 -0.6906 -1.1962 14 6 2.1470 -0.0181 -2.3571 15 8 1.8582 1.1617 -2.4116 16 6 2.6394 -0.7135 -3.5617 17 6 2.9728 -2.0685 -3.5035 18 6 3.4318 -2.7126 -4.6325 19 6 3.5639 -2.0223 -5.8267 20 6 3.2372 -0.6832 -5.8994 21 6 2.7734 -0.0181 -4.7725 22 8 2.4526 1.2968 -4.8417 23 6 2.7154 1.9306 -6.0021 24 1 3.0855 1.3733 -6.8500 25 6 2.5104 3.2983 -6.1072 26 7 2.7672 3.9167 -7.2390 27 14 1.8709 4.2622 -4.6403 28 1 3.0165 4.7471 -3.8292 29 1 1.0768 5.4224 -5.1186 30 1 1.0113 3.3836 -3.8072 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.6054 -0.2618 2.1370 35 1 1.7517 -1.7715 1.2055 36 1 3.5895 1.1582 2.2947 37 1 4.7488 -3.2450 1.5016 38 1 5.4058 -3.9719 4.0186 39 1 4.7391 -1.9843 5.5904 40 1 2.2491 -1.6317 -1.1527 41 1 2.8714 -2.6109 -2.5752 42 1 3.6896 -3.7602 -4.5860 43 1 3.9239 -2.5354 -6.7062 44 1 3.3468 -0.1511 -6.8328 45 1 2.6235 4.8732 -7.3126 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123710394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:20 Heat of formation + Delta-G solvation = -69.328542 kcal Electronic energy + Delta-G solvation = -30073.942999 eV Core-core repulsion = 25831.275541 eV Total energy + Delta-G solvation = -4242.667458 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.89648 -39.90044 -38.75992 -37.60093 -36.51152 -35.20390 -33.37639 -32.43671 -32.00524 -31.04163 -29.73988 -29.18458 -28.07660 -25.31361 -24.23561 -23.37661 -22.09105 -21.66293 -20.80761 -20.77571 -20.08971 -18.34233 -17.88808 -17.79353 -16.64943 -16.44732 -16.18949 -15.89201 -15.32641 -15.20561 -14.75338 -14.40182 -14.34675 -14.09413 -13.73016 -13.57970 -13.49303 -13.23354 -13.14619 -12.95086 -12.85155 -12.33957 -12.29338 -12.14736 -12.09669 -11.91016 -11.76642 -11.39551 -11.25759 -10.96724 -10.79360 -10.69776 -10.48482 -10.22146 -10.02480 -9.59497 -9.02149 -8.87758 -8.85811 -8.68002 -8.37209 -7.46592 -6.45246 -4.10340 1.38856 1.59065 2.19719 2.29957 2.61315 3.33754 3.41392 3.51081 3.60166 3.68924 4.10539 4.16368 4.38010 4.51136 4.58024 4.66730 4.74632 4.75540 4.84420 4.90943 5.11120 5.27412 5.32463 5.37850 5.42621 5.48477 5.49492 5.58270 5.64647 5.66713 5.71657 5.78421 5.90926 6.04830 6.15637 6.17978 6.28526 6.38688 6.56412 6.77865 6.81580 6.85163 7.02007 7.15815 7.33374 7.49130 7.69149 7.95932 7.97394 8.88553 8.92670 9.53566 10.59816 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012497 B = 0.003077 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.987062 B = 9097.571178 C =10322.899675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.148 3.852 3 H 0.097 0.903 4 C -0.156 4.156 5 C 0.192 3.808 6 H 0.129 0.871 7 O -0.542 6.542 8 C -0.043 4.043 9 C -0.202 4.202 10 C -0.213 4.213 11 C -0.043 4.043 12 O -0.174 6.174 13 N -0.738 5.738 14 C 0.563 3.437 15 O -0.514 6.514 16 C -0.226 4.226 17 C -0.041 4.041 18 C -0.222 4.222 19 C -0.051 4.051 20 C -0.227 4.227 21 C 0.201 3.799 22 O -0.165 6.165 23 C -0.396 4.396 24 H 0.108 0.892 25 C 0.072 3.928 26 N -0.870 5.870 27 Si 0.901 3.099 28 H -0.273 1.273 29 H -0.287 1.287 30 H -0.238 1.238 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.379 0.621 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.202 0.798 40 H 0.391 0.609 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.138 0.862 45 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.551 -15.012 20.701 25.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.043 3.957 3 H 0.115 0.885 4 C -0.194 4.194 5 C 0.133 3.867 6 H 0.146 0.854 7 O -0.347 6.347 8 C -0.093 4.093 9 C -0.222 4.222 10 C -0.232 4.232 11 C -0.110 4.110 12 O -0.070 6.070 13 N -0.393 5.393 14 C 0.353 3.647 15 O -0.389 6.389 16 C -0.231 4.231 17 C -0.060 4.060 18 C -0.241 4.241 19 C -0.070 4.070 20 C -0.246 4.246 21 C 0.143 3.857 22 O -0.065 6.065 23 C -0.471 4.471 24 H 0.125 0.875 25 C -0.134 4.134 26 N -0.506 5.506 27 Si 0.725 3.275 28 H -0.199 1.199 29 H -0.213 1.213 30 H -0.161 1.161 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.226 0.774 37 H 0.168 0.832 38 H 0.166 0.834 39 H 0.219 0.781 40 H 0.225 0.775 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.131 0.869 44 H 0.155 0.845 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.419 -13.521 20.217 24.325 hybrid contribution -0.142 -0.441 0.930 1.039 sum 0.277 -13.962 21.147 25.342 Atomic orbital electron populations 1.22181 0.95385 1.01865 1.02693 1.20763 0.93760 0.98216 0.82950 0.88466 1.22660 0.94827 1.02667 0.99262 1.20591 0.93651 0.80615 0.91861 0.85363 1.86713 1.77017 1.23522 1.47425 1.23527 1.04996 0.96831 0.83962 1.21648 1.05090 0.96544 0.98888 1.21862 1.06940 1.01311 0.93116 1.24066 1.02112 0.87532 0.97295 1.83970 1.64333 1.41377 1.17304 1.45975 1.70226 1.13467 1.09676 1.18166 0.77480 0.86577 0.82505 1.90855 1.48624 1.15133 1.84308 1.18875 1.17255 0.94555 0.92390 1.20740 0.95578 0.92146 0.97561 1.20530 1.10323 0.99587 0.93631 1.20958 0.95322 0.93646 0.97060 1.21289 1.08314 0.95375 0.99632 1.19026 0.90169 0.84683 0.91799 1.83781 1.68337 1.17237 1.37112 1.20920 1.45426 0.92326 0.88442 0.87480 1.24493 0.95359 0.95619 0.97903 1.69637 1.44960 1.11004 1.24979 0.86194 0.80475 0.78980 0.81833 1.19882 1.21329 1.16082 0.92714 0.92100 0.91464 0.89681 0.89957 0.77384 0.83198 0.83360 0.78090 0.77452 0.86962 0.87073 0.86885 0.84455 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.48 37.16 0.35 -1.56 16 2 C 0.15 1.82 2.53 -67.94 -0.17 1.65 16 3 H 0.10 1.49 7.13 -51.93 -0.37 1.12 16 4 C -0.16 -1.37 4.41 -26.73 -0.12 -1.48 16 5 C 0.19 1.95 3.38 -27.88 -0.09 1.85 16 6 H 0.13 1.37 7.61 -51.93 -0.40 0.98 16 7 O -0.54 -6.47 12.78 -37.52 -0.48 -6.95 16 8 C -0.04 -0.42 6.18 -35.62 -0.22 -0.64 16 9 C -0.20 -1.88 10.80 -39.70 -0.43 -2.30 16 10 C -0.21 -1.74 10.91 -39.70 -0.43 -2.18 16 11 C -0.04 -0.33 12.09 29.42 0.36 0.03 16 12 O -0.17 -1.70 10.58 3.45 0.04 -1.66 16 13 N -0.74 -10.25 4.40 -54.85 -0.24 -10.49 16 14 C 0.56 11.12 7.73 -12.47 -0.10 11.02 16 15 O -0.51 -12.61 14.83 -16.56 -0.25 -12.85 16 16 C -0.23 -4.52 5.89 -104.81 -0.62 -5.13 16 17 C -0.04 -0.64 9.54 -39.20 -0.37 -1.02 16 18 C -0.22 -3.38 10.03 -39.60 -0.40 -3.78 16 19 C -0.05 -0.87 10.03 -39.54 -0.40 -1.27 16 20 C -0.23 -4.79 9.16 -39.44 -0.36 -5.15 16 21 C 0.20 4.74 6.66 -38.60 -0.26 4.48 16 22 O -0.16 -4.54 6.67 -21.06 -0.14 -4.68 16 23 C -0.40 -11.39 9.95 30.90 0.31 -11.08 16 24 H 0.11 3.06 5.44 -52.49 -0.29 2.78 16 25 C 0.07 2.08 5.49 -17.52 -0.10 1.98 16 26 N -0.87 -25.47 13.96 55.48 0.77 -24.69 16 27 Si 0.90 23.42 28.62 -169.99 -4.86 18.55 16 28 H -0.27 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 30 H -0.24 -6.50 7.11 56.52 0.40 -6.10 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.38 3.19 8.97 45.56 0.41 3.60 16 37 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.20 0.79 8.06 -52.48 -0.42 0.37 16 40 H 0.39 4.17 6.63 -40.82 -0.27 3.90 16 41 H 0.11 1.27 6.40 -52.49 -0.34 0.94 16 42 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 43 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 44 H 0.14 3.02 5.64 -52.49 -0.30 2.72 16 45 H 0.28 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 384.53 15.07 5.79 5.79 Total: -1.00 -35.47 384.53 -7.32 -42.79 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -4.91 Total: 8.77 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -3.05 Total: -14.58 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.53 Total: -35.18 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.83 Total: -26.14 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -4.86 Total: 18.55 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.47 -7.32 -42.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123710394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.541 kcal (2) G-P(sol) polarization free energy of solvation -35.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds