Wall clock time and date at job start Wed Apr 1 2020 03:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46992 * 2 1 4 4 C 1.52991 * 109.47044 * 119.99974 * 2 1 3 5 5 C 1.53004 * 109.47007 * 185.00119 * 4 2 1 6 6 H 1.09000 * 109.47271 * 304.99991 * 5 4 2 7 7 O 1.42905 * 109.47081 * 65.00218 * 5 4 2 8 8 C 1.50707 * 109.47046 * 184.99944 * 5 4 2 9 9 C 1.34514 * 125.78737 * 99.99997 * 8 5 4 10 10 C 1.41379 * 106.83926 * 179.97438 * 9 8 5 11 11 C 1.34512 * 106.84076 * 0.02562 * 10 9 8 12 12 O 1.34295 * 125.79142 * 279.69132 * 8 5 4 13 13 N 1.46498 * 109.47270 * 240.00154 * 2 1 3 14 14 C 1.34780 * 119.99715 * 84.99664 * 13 2 1 15 15 O 1.21584 * 120.00344 * 0.02562 * 14 13 2 16 16 C 1.47542 * 119.99606 * 179.97438 * 14 13 2 17 17 C 1.39663 * 120.19563 * 0.02562 * 16 14 13 18 18 C 1.37837 * 119.91775 * 179.97438 * 17 16 14 19 19 C 1.38574 * 120.32020 * 359.97438 * 18 17 16 20 20 C 1.38026 * 120.40344 * 359.97438 * 19 18 17 21 21 C 1.38829 * 120.07257 * 0.02562 * 20 19 18 22 22 O 1.35522 * 120.15989 * 179.97438 * 21 20 19 23 23 C 1.34812 * 117.00136 * 354.39845 * 22 21 20 24 24 H 1.07998 * 119.99529 * 5.06496 * 23 22 21 25 25 C 1.38692 * 120.00205 * 185.06446 * 23 22 21 26 26 N 1.31514 * 120.00382 * 179.97438 * 25 23 22 27 27 Si 1.86810 * 119.99786 * 0.02562 * 25 23 22 28 28 H 1.48504 * 109.46951 * 90.00022 * 27 25 23 29 29 H 1.48500 * 109.46957 * 209.99559 * 27 25 23 30 30 H 1.48493 * 109.47297 * 329.99896 * 27 25 23 31 31 H 1.08999 * 109.46866 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47335 * 299.99935 * 1 2 3 33 33 H 1.08999 * 109.46983 * 60.00022 * 1 2 3 34 34 H 1.09002 * 109.47839 * 305.00017 * 4 2 1 35 35 H 1.09001 * 109.47489 * 65.00749 * 4 2 1 36 36 H 0.96694 * 113.99723 * 60.00048 * 7 5 4 37 37 H 1.07999 * 126.57972 * 359.96573 * 9 8 5 38 38 H 1.07999 * 126.57788 * 180.02562 * 10 9 8 39 39 H 1.08003 * 125.78658 * 180.02562 * 11 10 9 40 40 H 0.96993 * 120.00322 * 264.99994 * 13 2 1 41 41 H 1.07996 * 120.04374 * 359.95841 * 17 16 14 42 42 H 1.07993 * 119.83964 * 179.97438 * 18 17 16 43 43 H 1.08001 * 119.79401 * 180.02562 * 19 18 17 44 44 H 1.07999 * 119.96323 * 179.74829 * 20 19 18 45 45 H 0.97002 * 120.00488 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3136 6 1 3.9954 -0.9922 0.3868 7 8 3.9385 0.7550 1.4881 8 6 4.0773 -1.4258 2.4748 9 6 4.6102 -2.6585 2.3978 10 6 4.9539 -3.0391 3.7153 11 6 4.6099 -2.0165 4.5186 12 8 4.0848 -1.0398 3.7610 13 7 2.0184 -0.6906 -1.1962 14 6 2.1470 -0.0181 -2.3571 15 8 1.8582 1.1617 -2.4116 16 6 2.6394 -0.7135 -3.5617 17 6 2.9728 -2.0685 -3.5035 18 6 3.4318 -2.7126 -4.6325 19 6 3.5639 -2.0223 -5.8267 20 6 3.2372 -0.6832 -5.8994 21 6 2.7734 -0.0181 -4.7725 22 8 2.4526 1.2968 -4.8417 23 6 2.7154 1.9306 -6.0021 24 1 3.0855 1.3733 -6.8500 25 6 2.5104 3.2983 -6.1072 26 7 2.7672 3.9167 -7.2390 27 14 1.8709 4.2622 -4.6403 28 1 3.0165 4.7471 -3.8292 29 1 1.0768 5.4224 -5.1186 30 1 1.0113 3.3836 -3.8072 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.6054 -0.2618 2.1370 35 1 1.7517 -1.7715 1.2055 36 1 3.5895 1.1582 2.2947 37 1 4.7488 -3.2450 1.5016 38 1 5.4058 -3.9719 4.0186 39 1 4.7391 -1.9843 5.5904 40 1 2.2491 -1.6317 -1.1527 41 1 2.8714 -2.6109 -2.5752 42 1 3.6896 -3.7602 -4.5860 43 1 3.9239 -2.5354 -6.7062 44 1 3.3468 -0.1511 -6.8328 45 1 2.6235 4.8732 -7.3126 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123710394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:19 Heat of formation + Delta-G solvation = -95.042416 kcal Electronic energy + Delta-G solvation = -30075.058036 eV Core-core repulsion = 25831.275541 eV Total energy + Delta-G solvation = -4243.782496 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.52071 -41.43128 -40.18454 -38.72043 -38.12082 -36.40748 -34.51673 -34.01983 -33.26715 -31.97839 -30.96472 -30.77407 -28.83128 -27.29511 -25.27632 -24.57989 -23.17204 -22.69769 -22.03807 -21.50111 -21.44972 -19.80356 -19.49807 -18.91342 -18.04661 -17.45563 -17.07811 -16.84275 -16.53525 -16.28950 -16.13616 -15.83951 -15.81958 -15.61648 -15.45241 -15.14505 -14.53469 -14.35071 -14.21863 -14.04411 -14.01386 -13.74044 -13.45503 -13.43793 -13.10938 -12.93466 -12.82293 -12.80410 -12.59693 -12.56944 -12.37900 -12.02304 -11.86487 -11.50862 -11.31182 -10.96917 -10.84403 -10.64904 -10.12213 -9.81106 -9.40190 -9.12840 -8.57862 -6.26240 0.08436 0.66727 0.76217 1.23821 1.30216 1.58043 1.70096 2.00956 2.08492 2.26296 2.29835 2.76862 3.04280 3.19151 3.38591 3.44406 3.79138 3.90941 4.02177 4.05565 4.07719 4.16631 4.27470 4.30546 4.41231 4.45660 4.50106 4.60388 4.72850 4.79043 4.82805 4.88441 4.92992 5.04048 5.06403 5.16037 5.18185 5.29145 5.30447 5.48896 5.59878 5.62829 5.63829 5.70993 5.84786 6.16159 6.17494 6.64952 6.69977 6.79977 7.47361 7.60477 8.52737 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012497 B = 0.003077 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.987062 B = 9097.571178 C =10322.899675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.146 3.854 3 H 0.061 0.939 4 C -0.138 4.138 5 C 0.193 3.807 6 H 0.120 0.880 7 O -0.570 6.570 8 C -0.061 4.061 9 C -0.209 4.209 10 C -0.228 4.228 11 C -0.042 4.042 12 O -0.188 6.188 13 N -0.711 5.711 14 C 0.556 3.444 15 O -0.571 6.571 16 C -0.233 4.233 17 C -0.030 4.030 18 C -0.189 4.189 19 C -0.044 4.044 20 C -0.252 4.252 21 C 0.159 3.841 22 O -0.210 6.210 23 C -0.402 4.402 24 H 0.091 0.909 25 C 0.026 3.974 26 N -0.912 5.912 27 Si 0.955 3.045 28 H -0.279 1.279 29 H -0.265 1.265 30 H -0.265 1.265 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.026 0.974 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.390 0.610 37 H 0.164 0.836 38 H 0.168 0.832 39 H 0.235 0.765 40 H 0.411 0.589 41 H 0.168 0.832 42 H 0.167 0.833 43 H 0.149 0.851 44 H 0.113 0.887 45 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.923 -20.014 23.958 31.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.042 3.958 3 H 0.079 0.921 4 C -0.176 4.176 5 C 0.134 3.866 6 H 0.138 0.862 7 O -0.377 6.377 8 C -0.111 4.111 9 C -0.228 4.228 10 C -0.247 4.247 11 C -0.109 4.109 12 O -0.084 6.084 13 N -0.366 5.366 14 C 0.346 3.654 15 O -0.451 6.451 16 C -0.237 4.237 17 C -0.048 4.048 18 C -0.207 4.207 19 C -0.062 4.062 20 C -0.271 4.271 21 C 0.106 3.894 22 O -0.114 6.114 23 C -0.478 4.478 24 H 0.109 0.891 25 C -0.174 4.174 26 N -0.552 5.552 27 Si 0.780 3.220 28 H -0.204 1.204 29 H -0.190 1.190 30 H -0.190 1.190 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.045 0.955 34 H 0.120 0.880 35 H 0.127 0.873 36 H 0.240 0.760 37 H 0.181 0.819 38 H 0.185 0.815 39 H 0.251 0.749 40 H 0.249 0.751 41 H 0.186 0.814 42 H 0.185 0.815 43 H 0.167 0.833 44 H 0.131 0.869 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.797 -18.620 23.522 30.010 hybrid contribution -0.144 0.576 0.141 0.610 sum 0.653 -18.043 23.663 29.765 Atomic orbital electron populations 1.22130 0.94596 1.03090 1.01790 1.20854 0.94326 0.96972 0.83686 0.92058 1.22538 0.93893 1.03708 0.97461 1.20554 0.94314 0.79805 0.91977 0.86197 1.86670 1.77667 1.24880 1.48492 1.23397 1.06508 0.97159 0.84036 1.21973 1.04392 0.96421 0.99990 1.22204 1.07332 1.02369 0.92794 1.24820 1.00632 0.86772 0.98653 1.83961 1.64792 1.42248 1.17447 1.45725 1.68281 1.14150 1.08419 1.18354 0.77089 0.86055 0.83934 1.90841 1.51146 1.17758 1.85327 1.19349 1.16581 0.96453 0.91337 1.21364 0.93164 0.89988 1.00289 1.21240 1.05825 1.01765 0.91875 1.21437 0.93456 0.91704 0.99619 1.21328 1.10089 0.97505 0.98225 1.19804 0.91409 0.83982 0.94173 1.83773 1.72040 1.19329 1.36238 1.20890 1.45288 0.92643 0.88952 0.89114 1.25026 0.96392 0.96397 0.99614 1.69680 1.48120 1.11412 1.26015 0.85413 0.79418 0.78010 0.79190 1.20438 1.19002 1.18988 0.90292 0.89958 0.95508 0.88014 0.87317 0.76033 0.81886 0.81451 0.74869 0.75058 0.81447 0.81516 0.83282 0.86908 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 9.48 71.98 0.68 -2.80 16 2 C 0.15 3.42 2.53 44.99 0.11 3.53 16 3 H 0.06 1.94 7.13 -2.39 -0.02 1.92 16 4 C -0.14 -2.01 4.41 30.59 0.14 -1.87 16 5 C 0.19 3.52 3.38 29.85 0.10 3.62 16 6 H 0.12 2.30 7.61 -2.39 -0.02 2.28 16 7 O -0.57 -13.41 12.78 -146.79 -1.88 -15.28 16 8 C -0.06 -1.05 6.18 24.83 0.15 -0.90 16 9 C -0.21 -3.20 10.80 22.19 0.24 -2.96 16 10 C -0.23 -2.98 10.91 22.19 0.24 -2.73 16 11 C -0.04 -0.52 12.09 66.97 0.81 0.29 16 12 O -0.19 -3.22 10.58 -0.19 0.00 -3.22 16 13 N -0.71 -18.39 4.40 -445.71 -1.96 -20.35 16 14 C 0.56 22.12 7.73 86.70 0.67 22.79 16 15 O -0.57 -29.67 14.83 16.91 0.25 -29.42 16 16 C -0.23 -9.10 5.89 -19.99 -0.12 -9.22 16 17 C -0.03 -0.78 9.54 22.52 0.21 -0.56 16 18 C -0.19 -4.57 10.03 22.25 0.22 -4.35 16 19 C -0.04 -1.35 10.03 22.30 0.22 -1.13 16 20 C -0.25 -10.87 9.16 22.36 0.20 -10.66 16 21 C 0.16 7.81 6.66 22.91 0.15 7.96 16 22 O -0.21 -12.42 6.67 0.83 0.01 -12.42 16 23 C -0.40 -24.98 9.95 67.93 0.68 -24.31 16 24 H 0.09 5.70 5.44 -2.91 -0.02 5.69 16 25 C 0.03 1.60 5.49 84.85 0.47 2.06 16 26 N -0.91 -56.78 13.96 21.62 0.30 -56.48 16 27 Si 0.96 52.10 28.62 68.60 1.96 54.06 16 28 H -0.28 -15.11 7.11 99.48 0.71 -14.40 16 29 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 30 H -0.27 -15.51 7.11 99.48 0.71 -14.80 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.39 6.48 8.97 -74.06 -0.66 5.81 16 37 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 38 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 39 H 0.24 0.95 8.06 -2.91 -0.02 0.93 16 40 H 0.41 6.97 6.63 -92.71 -0.61 6.36 16 41 H 0.17 2.52 6.40 -2.91 -0.02 2.50 16 42 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 43 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 44 H 0.11 5.35 5.64 -2.91 -0.02 5.33 16 45 H 0.29 16.37 8.31 -92.71 -0.77 15.60 16 Total: -1.00 -88.29 384.53 3.64 -84.65 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -0.23 Total: 19.69 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: 5.19 Total: -21.23 kcal Atomic # 7 Polarization: -75.17 SS G_CDS: -1.66 Total: -76.83 kcal Atomic # 8 Polarization: -58.72 SS G_CDS: -1.62 Total: -60.34 kcal Atomic # 14 Polarization: 52.10 SS G_CDS: 1.96 Total: 54.06 kcal Total: -88.29 3.64 -84.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123710394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.392 kcal (2) G-P(sol) polarization free energy of solvation -88.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds