Wall clock time and date at job start Wed Apr 1 2020 03:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47449 * 2 1 4 4 C 1.53003 * 109.47108 * 239.99892 * 2 1 3 5 5 C 1.53004 * 109.46934 * 174.99662 * 4 2 1 6 6 H 1.08994 * 109.47793 * 305.00330 * 5 4 2 7 7 O 1.42905 * 109.46777 * 65.00585 * 5 4 2 8 8 C 1.50705 * 109.46880 * 185.00052 * 5 4 2 9 9 C 1.34511 * 125.78799 * 100.00267 * 8 5 4 10 10 C 1.41387 * 106.84179 * 179.97438 * 9 8 5 11 11 C 1.34512 * 106.83745 * 0.02562 * 10 9 8 12 12 O 1.34298 * 125.79281 * 279.69556 * 8 5 4 13 13 N 1.46501 * 109.47474 * 120.00345 * 2 1 3 14 14 C 1.34780 * 119.99533 * 275.00134 * 13 2 1 15 15 O 1.21590 * 120.00046 * 359.97438 * 14 13 2 16 16 C 1.47535 * 119.99867 * 179.97438 * 14 13 2 17 17 C 1.39665 * 120.19576 * 359.97438 * 16 14 13 18 18 C 1.37830 * 119.92214 * 180.02562 * 17 16 14 19 19 C 1.38580 * 120.32046 * 359.97438 * 18 17 16 20 20 C 1.38026 * 120.40073 * 359.97438 * 19 18 17 21 21 C 1.38831 * 120.07205 * 0.02562 * 20 19 18 22 22 O 1.35519 * 120.16243 * 180.02562 * 21 20 19 23 23 C 1.34817 * 117.00144 * 354.39671 * 22 21 20 24 24 H 1.08011 * 119.99389 * 5.06697 * 23 22 21 25 25 C 1.38693 * 120.00626 * 185.06457 * 23 22 21 26 26 N 1.31517 * 119.99838 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00259 * 179.97438 * 25 23 22 28 28 H 1.48511 * 109.46998 * 60.00314 * 27 25 23 29 29 H 1.48501 * 109.47046 * 179.97438 * 27 25 23 30 30 H 1.48497 * 109.47494 * 300.00160 * 27 25 23 31 31 H 1.08995 * 109.47292 * 299.99707 * 1 2 3 32 32 H 1.09005 * 109.46941 * 59.99969 * 1 2 3 33 33 H 1.09000 * 109.47028 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47464 * 295.00357 * 4 2 1 35 35 H 1.09003 * 109.47264 * 55.00516 * 4 2 1 36 36 H 0.96697 * 113.99862 * 60.00024 * 7 5 4 37 37 H 1.08000 * 126.57824 * 0.03839 * 9 8 5 38 38 H 1.07997 * 126.57848 * 179.97438 * 10 9 8 39 39 H 1.07996 * 125.78812 * 180.02562 * 11 10 9 40 40 H 0.96994 * 120.00062 * 94.99555 * 13 2 1 41 41 H 1.08003 * 120.04126 * 359.97438 * 17 16 14 42 42 H 1.08001 * 119.84369 * 180.02562 * 18 17 16 43 43 H 1.07999 * 119.79696 * 180.27727 * 19 18 17 44 44 H 1.07998 * 119.96126 * 180.02562 * 20 19 18 45 45 H 0.96997 * 120.00161 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 1 3.8571 0.4358 -1.2678 7 8 4.1392 -1.3165 -0.2102 8 6 4.0570 -1.2158 -2.6044 9 6 4.4042 -0.5322 -3.7096 10 6 4.8035 -1.4868 -4.6732 11 6 4.6758 -2.6966 -4.0992 12 8 4.2288 -2.5259 -2.8443 13 7 2.0184 -0.6907 1.1961 14 6 2.1471 -0.0183 2.3571 15 8 1.8583 1.1616 2.4116 16 6 2.6384 -0.7139 3.5618 17 6 2.9708 -2.0692 3.5040 18 6 3.4288 -2.7136 4.6330 19 6 3.5620 -2.0231 5.8271 20 6 3.2384 -0.6832 5.8991 21 6 2.7755 -0.0179 4.7719 22 8 2.4577 1.2977 4.8403 23 6 2.5020 1.8756 6.0576 24 1 2.8598 1.3151 6.9087 25 6 2.0881 3.1897 6.2169 26 7 1.6519 3.8720 5.1807 27 14 2.1488 3.9901 7.9037 28 1 3.5483 3.9920 8.4006 29 1 1.6568 5.3878 7.8063 30 1 1.2904 3.2270 8.8449 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.7516 -1.7715 -1.2057 35 1 1.6054 -0.2617 -2.1370 36 1 3.9206 -2.2581 -0.1872 37 1 4.3831 0.5401 -3.8363 38 1 5.1446 -1.2836 -5.6775 39 1 4.8999 -3.6441 -4.5665 40 1 2.2491 -1.6318 1.1525 41 1 2.8684 -2.6119 2.5758 42 1 3.6859 -3.7615 4.5867 43 1 3.9259 -2.5353 6.7055 44 1 3.3453 -0.1519 6.8332 45 1 1.3628 4.7912 5.2920 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123710609.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:22 Heat of formation + Delta-G solvation = -92.811577 kcal Electronic energy + Delta-G solvation = -30090.459817 eV Core-core repulsion = 25846.774057 eV Total energy + Delta-G solvation = -4243.685759 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.51481 -41.27477 -40.05978 -38.62249 -37.96481 -36.17967 -34.30666 -34.04385 -33.28916 -31.94423 -30.81487 -30.50584 -28.79880 -27.34903 -25.25814 -24.42678 -23.23667 -22.71668 -22.03414 -21.52574 -21.26697 -19.80133 -19.23512 -18.84252 -17.83945 -17.36566 -17.18874 -16.81576 -16.37701 -16.16454 -16.10630 -15.79832 -15.70792 -15.53407 -15.28102 -14.98332 -14.40750 -14.28281 -14.14853 -14.08588 -13.76023 -13.53296 -13.44935 -13.40231 -12.94973 -12.85304 -12.80732 -12.65145 -12.54469 -12.47233 -12.32797 -12.13854 -11.88530 -11.37944 -11.27616 -10.85599 -10.80402 -10.48970 -9.95438 -9.69249 -9.40153 -8.98521 -8.42171 -6.12914 0.19999 0.76609 0.77539 1.32094 1.45360 1.49996 1.68746 2.00637 2.17308 2.21748 2.39932 2.91488 3.28507 3.39502 3.46053 3.51990 3.83239 3.98186 4.04792 4.13129 4.13720 4.18045 4.26564 4.33152 4.44420 4.48184 4.57178 4.67836 4.74680 4.81239 4.87105 4.91269 5.01358 5.03104 5.09479 5.12663 5.17848 5.22106 5.29940 5.53424 5.58197 5.65827 5.73635 5.75950 5.98980 6.16030 6.21990 6.73303 6.85773 6.97132 7.64711 7.84644 8.78341 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014872 B = 0.002716 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.247491 B =10306.413397 C =11250.925775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.148 3.852 3 H 0.052 0.948 4 C -0.136 4.136 5 C 0.197 3.803 6 H 0.110 0.890 7 O -0.556 6.556 8 C -0.054 4.054 9 C -0.218 4.218 10 C -0.230 4.230 11 C -0.037 4.037 12 O -0.181 6.181 13 N -0.698 5.698 14 C 0.551 3.449 15 O -0.573 6.573 16 C -0.240 4.240 17 C -0.026 4.026 18 C -0.202 4.202 19 C -0.043 4.043 20 C -0.261 4.261 21 C 0.146 3.854 22 O -0.189 6.189 23 C -0.428 4.428 24 H 0.105 0.895 25 C -0.023 4.023 26 N -0.906 5.906 27 Si 1.021 2.979 28 H -0.255 1.255 29 H -0.273 1.273 30 H -0.254 1.254 31 H 0.021 0.979 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.389 0.611 37 H 0.153 0.847 38 H 0.166 0.834 39 H 0.239 0.761 40 H 0.408 0.592 41 H 0.161 0.839 42 H 0.163 0.837 43 H 0.152 0.848 44 H 0.121 0.879 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.636 -18.641 -16.770 25.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.043 3.957 3 H 0.071 0.929 4 C -0.174 4.174 5 C 0.137 3.863 6 H 0.127 0.873 7 O -0.363 6.363 8 C -0.104 4.104 9 C -0.238 4.238 10 C -0.249 4.249 11 C -0.104 4.104 12 O -0.077 6.077 13 N -0.353 5.353 14 C 0.341 3.659 15 O -0.453 6.453 16 C -0.245 4.245 17 C -0.045 4.045 18 C -0.220 4.220 19 C -0.062 4.062 20 C -0.280 4.280 21 C 0.091 3.909 22 O -0.091 6.091 23 C -0.504 4.504 24 H 0.122 0.878 25 C -0.222 4.222 26 N -0.542 5.542 27 Si 0.839 3.161 28 H -0.179 1.179 29 H -0.198 1.198 30 H -0.178 1.178 31 H 0.041 0.959 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.127 0.873 36 H 0.238 0.762 37 H 0.171 0.829 38 H 0.184 0.816 39 H 0.255 0.745 40 H 0.246 0.754 41 H 0.178 0.822 42 H 0.181 0.819 43 H 0.169 0.831 44 H 0.138 0.862 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.452 -17.046 -16.645 24.073 hybrid contribution -0.081 0.468 0.371 0.602 sum 3.370 -16.578 -16.274 23.474 Atomic orbital electron populations 1.22130 0.94842 1.02946 1.01657 1.20810 0.94199 0.96456 0.84234 0.92943 1.22538 0.94063 1.03406 0.97423 1.20429 0.92129 0.95511 0.78187 0.87265 1.86744 1.75714 1.26819 1.46975 1.23355 1.06483 0.81505 0.99086 1.21942 1.06128 1.01682 0.93998 1.22172 1.07865 0.92511 1.02361 1.24826 1.01934 1.01728 0.81905 1.83958 1.66036 1.26142 1.31610 1.45569 1.67867 1.13915 1.07959 1.18432 0.77230 0.86079 0.84193 1.90916 1.51165 1.17839 1.85379 1.19375 1.16782 0.96207 0.92149 1.21284 0.93104 0.90086 0.99989 1.21174 1.07092 1.01629 0.92129 1.21408 0.93557 0.91842 0.99355 1.21286 1.10870 0.97520 0.98318 1.20127 0.91504 0.84715 0.94559 1.84184 1.74837 1.18160 1.31959 1.21980 1.45812 0.97340 0.85255 0.87812 1.26738 0.95216 0.96041 1.04173 1.70320 1.40581 1.10529 1.32742 0.84642 0.79850 0.77176 0.74403 1.17880 1.19758 1.17834 0.95948 0.89790 0.90350 0.88047 0.87325 0.76198 0.82925 0.81648 0.74514 0.75364 0.82172 0.81901 0.83081 0.86154 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 9.48 71.98 0.68 -3.40 16 2 C 0.15 4.02 2.57 44.99 0.12 4.13 16 3 H 0.05 1.84 7.58 -2.38 -0.02 1.82 16 4 C -0.14 -2.32 4.51 30.60 0.14 -2.18 16 5 C 0.20 3.96 3.43 29.85 0.10 4.06 16 6 H 0.11 2.56 8.13 -2.39 -0.02 2.54 16 7 O -0.56 -12.20 11.24 -146.80 -1.65 -13.85 16 8 C -0.05 -1.02 6.18 24.83 0.15 -0.87 16 9 C -0.22 -4.03 10.80 22.19 0.24 -3.79 16 10 C -0.23 -3.44 10.91 22.19 0.24 -3.20 16 11 C -0.04 -0.48 12.09 66.97 0.81 0.33 16 12 O -0.18 -3.12 10.58 -0.22 0.00 -3.12 16 13 N -0.70 -21.41 3.82 -445.69 -1.70 -23.11 16 14 C 0.55 25.24 7.73 86.69 0.67 25.91 16 15 O -0.57 -34.24 14.83 16.90 0.25 -33.99 16 16 C -0.24 -10.67 5.89 -19.99 -0.12 -10.79 16 17 C -0.03 -0.80 9.53 22.52 0.21 -0.59 16 18 C -0.20 -5.54 10.03 22.25 0.22 -5.32 16 19 C -0.04 -1.40 10.03 22.30 0.22 -1.18 16 20 C -0.26 -11.52 9.16 22.36 0.20 -11.32 16 21 C 0.15 7.74 6.66 22.91 0.15 7.89 16 22 O -0.19 -12.30 7.84 0.82 0.01 -12.29 16 23 C -0.43 -26.53 9.49 67.93 0.64 -25.88 16 24 H 0.10 5.79 5.21 -2.91 -0.02 5.77 16 25 C -0.02 -1.38 5.49 84.85 0.47 -0.91 16 26 N -0.91 -60.33 13.67 21.62 0.30 -60.03 16 27 Si 1.02 45.22 29.55 68.60 2.03 47.25 16 28 H -0.25 -10.49 7.11 99.48 0.71 -9.78 16 29 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 30 H -0.25 -10.45 7.11 99.48 0.71 -9.74 16 31 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.39 5.29 8.72 -74.06 -0.65 4.64 16 37 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 38 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 39 H 0.24 1.00 8.06 -2.91 -0.02 0.97 16 40 H 0.41 9.01 5.56 -92.71 -0.52 8.49 16 41 H 0.16 3.23 6.40 -2.91 -0.02 3.21 16 42 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 43 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 44 H 0.12 5.41 5.64 -2.91 -0.02 5.39 16 45 H 0.27 16.49 8.31 -92.71 -0.77 15.72 16 Total: -1.00 -94.94 383.38 4.28 -90.67 By element: Atomic # 1 Polarization: 35.71 SS G_CDS: -0.11 Total: 35.60 kcal Atomic # 6 Polarization: -32.27 SS G_CDS: 5.17 Total: -27.10 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -1.41 Total: -83.14 kcal Atomic # 8 Polarization: -61.86 SS G_CDS: -1.40 Total: -63.26 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -94.94 4.28 -90.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123710609.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.146 kcal (2) G-P(sol) polarization free energy of solvation -94.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds