Wall clock time and date at job start Wed Apr 1 2020 02:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 O 1.42900 * 109.47378 * 36.74313 * 3 2 1 5 5 C 1.42900 * 113.99843 * 180.02562 * 4 3 2 6 6 C 1.53009 * 109.47033 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47252 * 179.97438 * 6 5 4 8 8 O 1.21298 * 120.00216 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00003 * 179.97438 * 7 6 5 10 10 C 1.46496 * 119.99850 * 4.74549 * 9 7 6 11 11 C 1.50697 * 109.47350 * 269.99785 * 10 9 7 12 12 H 1.08002 * 119.99897 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00200 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99857 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00005 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47388 * 59.99696 * 15 13 11 17 17 H 1.48501 * 109.47236 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47235 * 299.99757 * 15 13 11 19 19 C 1.40097 * 119.99949 * 184.74129 * 9 7 6 20 20 C 1.38843 * 120.01846 * 247.89944 * 19 9 7 21 21 C 1.38131 * 120.03832 * 180.28582 * 20 19 9 22 22 C 1.38715 * 120.15934 * 359.50513 * 21 20 19 23 23 C 1.38995 * 119.93271 * 0.40598 * 22 21 20 24 24 C 1.38646 * 119.88483 * 359.87351 * 23 22 21 25 25 O 1.36113 * 120.78453 * 180.02562 * 23 22 21 26 26 C 1.43176 * 116.73109 * 342.80135 * 25 23 22 27 27 C 1.53468 * 108.24442 * 46.18520 * 26 25 23 28 28 O 1.36205 * 119.31785 * 180.02562 * 22 21 20 29 29 H 4.38448 * 5.44541 * 179.97438 * 4 1 2 30 30 H 1.09003 * 109.47393 * 276.74426 * 3 2 1 31 31 H 1.08999 * 109.47180 * 156.74459 * 3 2 1 32 32 H 1.08998 * 109.47697 * 60.00321 * 5 4 3 33 33 H 1.08997 * 109.47099 * 299.99591 * 5 4 3 34 34 H 1.09004 * 109.46778 * 59.99358 * 6 5 4 35 35 H 1.08997 * 109.46943 * 299.99808 * 6 5 4 36 36 H 1.09006 * 109.46857 * 29.99839 * 10 9 7 37 37 H 1.08998 * 109.47245 * 149.99398 * 10 9 7 38 38 H 0.97001 * 119.99654 * 180.02562 * 14 13 11 39 39 H 1.07995 * 119.98413 * 0.02562 * 20 19 9 40 40 H 1.07998 * 119.92042 * 179.73902 * 21 20 19 41 41 H 1.07998 * 119.98938 * 179.97438 * 24 23 22 42 42 H 1.08996 * 109.70842 * 165.87615 * 26 25 23 43 43 H 1.08999 * 109.70321 * 286.50304 * 26 25 23 44 44 H 1.09004 * 109.70787 * 59.92492 * 27 26 25 45 45 H 1.08998 * 109.71113 * 180.54986 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1228 -1.0787 -0.8060 5 6 4.5474 -1.1688 -0.8729 6 6 4.9425 -2.3536 -1.7568 7 6 6.4448 -2.4482 -1.8280 8 8 7.1320 -1.6471 -1.2302 9 7 7.0249 -3.4236 -2.5551 10 6 6.1989 -4.3275 -3.3593 11 6 5.8100 -5.5242 -2.5300 12 1 6.1451 -5.6036 -1.5063 13 6 5.0274 -6.5180 -3.0783 14 7 4.6198 -6.4215 -4.3249 15 14 4.5461 -8.0017 -2.0504 16 1 3.7757 -7.5525 -0.8630 17 1 3.7086 -8.9179 -2.8655 18 1 5.7708 -8.7140 -1.6054 19 6 8.4178 -3.5729 -2.5419 20 6 9.1563 -3.3019 -3.6860 21 6 10.5291 -3.4547 -3.6752 22 6 11.1752 -3.8690 -2.5197 23 6 10.4387 -4.1392 -1.3723 24 6 9.0603 -3.9913 -1.3853 25 8 11.0548 -4.5462 -0.2288 26 6 12.3924 -5.0403 -0.3588 27 6 13.1779 -4.0712 -1.2526 28 8 12.5295 -4.0135 -2.5281 29 1 -1.0499 -0.0004 -0.0001 30 1 3.0094 -0.1199 1.0206 31 1 3.0088 0.9450 -0.4057 32 1 4.9499 -1.3138 0.1296 33 1 4.9500 -0.2488 -1.2966 34 1 4.5399 -2.2090 -2.7594 35 1 4.5399 -3.2734 -1.3328 36 1 5.3001 -3.8043 -3.6860 37 1 6.7642 -4.6576 -4.2308 38 1 4.0689 -7.1206 -4.7105 39 1 8.6568 -2.9756 -4.5862 40 1 11.1012 -3.2475 -4.5675 41 1 8.4864 -4.2012 -0.4948 42 1 12.8608 -5.0958 0.6239 43 1 12.3758 -6.0300 -0.8153 44 1 13.1885 -3.0798 -0.7995 45 1 14.1995 -4.4306 -1.3757 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130218123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:53 Heat of formation + Delta-G solvation = -81.647277 kcal Electronic energy + Delta-G solvation = -29690.393079 eV Core-core repulsion = 25447.191441 eV Total energy + Delta-G solvation = -4243.201639 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.29173 -41.22468 -39.22852 -38.51333 -38.23071 -36.53751 -34.56370 -34.41910 -32.69232 -31.95303 -31.26735 -29.56234 -28.75249 -27.87707 -25.84385 -25.28769 -24.46113 -23.75427 -21.99354 -20.47828 -19.58442 -19.26854 -18.85419 -18.60501 -18.11194 -18.02150 -17.38724 -17.25169 -16.93868 -16.39246 -16.28530 -16.02438 -15.90890 -15.82601 -15.38624 -15.08044 -14.89937 -14.73812 -14.44155 -14.16298 -14.01550 -13.74487 -13.48384 -13.41630 -13.03967 -12.93994 -12.73414 -12.60381 -12.41239 -12.25403 -11.99895 -11.96476 -11.79858 -11.52665 -11.49531 -11.44088 -10.95750 -10.59543 -10.55023 -10.01452 -9.58498 -8.92945 -8.21515 -6.35106 0.16914 0.25470 1.41140 1.41625 1.44314 1.49259 1.57739 1.82864 1.94976 2.09131 2.34616 2.41567 2.64295 2.97964 3.09691 3.28866 3.57822 3.65599 3.80584 3.96907 4.04626 4.05322 4.14610 4.15256 4.20660 4.33048 4.38186 4.45364 4.46477 4.49220 4.59362 4.65423 4.78602 4.82948 4.91846 5.01568 5.03928 5.05730 5.15792 5.35827 5.43675 5.67470 5.84391 5.92751 6.01933 6.11279 6.37322 6.41690 6.60497 6.74069 7.17529 7.36454 8.84074 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008301 B = 0.003328 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3372.322876 B = 8412.636379 C =10561.930505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.239 4.239 3 C 0.165 3.835 4 O -0.404 6.404 5 C 0.091 3.909 6 C -0.126 4.126 7 C 0.526 3.474 8 O -0.577 6.577 9 N -0.558 5.558 10 C 0.254 3.746 11 C -0.547 4.547 12 H 0.050 0.950 13 C 0.027 3.973 14 N -0.915 5.915 15 Si 0.951 3.049 16 H -0.271 1.271 17 H -0.278 1.278 18 H -0.276 1.276 19 C 0.150 3.850 20 C -0.123 4.123 21 C -0.097 4.097 22 C 0.039 3.961 23 C 0.054 3.946 24 C -0.123 4.123 25 O -0.327 6.327 26 C 0.011 3.989 27 C 0.016 3.984 28 O -0.315 6.315 29 H 0.256 0.744 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.043 0.957 37 H 0.027 0.973 38 H 0.269 0.731 39 H 0.145 0.855 40 H 0.167 0.833 41 H 0.112 0.888 42 H 0.156 0.844 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.868 8.127 5.876 13.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.240 4.240 3 C 0.090 3.910 4 O -0.324 6.324 5 C 0.015 3.985 6 C -0.166 4.166 7 C 0.317 3.683 8 O -0.458 6.458 9 N -0.285 5.285 10 C 0.135 3.865 11 C -0.585 4.585 12 H 0.068 0.932 13 C -0.174 4.174 14 N -0.554 5.554 15 Si 0.776 3.224 16 H -0.196 1.196 17 H -0.203 1.203 18 H -0.201 1.201 19 C 0.059 3.941 20 C -0.143 4.143 21 C -0.116 4.116 22 C -0.006 4.006 23 C 0.009 3.991 24 C -0.144 4.144 25 O -0.242 6.242 26 C -0.064 4.064 27 C -0.058 4.058 28 O -0.230 6.230 29 H 0.272 0.728 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.061 0.939 37 H 0.045 0.955 38 H 0.078 0.922 39 H 0.163 0.837 40 H 0.184 0.816 41 H 0.130 0.870 42 H 0.173 0.827 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 9.031 8.294 5.968 13.637 hybrid contribution -0.463 -1.081 0.616 1.328 sum 8.569 7.212 6.585 12.992 Atomic orbital electron populations 1.25862 0.96782 0.97070 0.98084 1.23109 0.94906 1.03198 1.02744 1.19281 0.84744 0.90817 0.96177 1.87879 1.21819 1.51637 1.71081 1.22049 0.79585 0.97510 0.99375 1.21351 0.90781 1.01064 1.03405 1.20667 0.90881 0.79448 0.77295 1.90622 1.66265 1.42242 1.46638 1.45840 1.04185 1.31606 1.46825 1.19282 0.89781 0.87488 0.89992 1.21550 1.32516 1.05680 0.98799 0.93155 1.25545 0.95454 1.00461 0.95908 1.69977 1.36102 1.35358 1.13990 0.85719 0.78280 0.79410 0.78987 1.19589 1.20349 1.20142 1.17437 0.83560 0.99231 0.93905 1.21167 0.93395 1.01421 0.98289 1.20499 0.93135 1.00382 0.97576 1.18884 0.83600 1.03580 0.94576 1.18592 0.91472 1.01931 0.87131 1.20383 0.91712 1.03230 0.99036 1.86278 1.30746 1.78859 1.28359 1.24039 0.79858 0.97365 1.05119 1.23977 0.98635 1.00924 0.82311 1.86292 1.15348 1.89158 1.32159 0.72794 0.89452 0.89042 0.92255 0.91452 0.87673 0.88163 0.93926 0.95490 0.92206 0.83724 0.81579 0.87013 0.82667 0.90364 0.90186 0.82126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 19.25 74.32 1.43 -1.94 16 2 C -0.24 -6.16 13.73 31.12 0.43 -5.73 16 3 C 0.16 4.08 6.41 70.17 0.45 4.53 16 4 O -0.40 -12.95 10.30 -148.98 -1.53 -14.49 16 5 C 0.09 2.91 5.23 71.99 0.38 3.28 16 6 C -0.13 -4.72 4.73 29.85 0.14 -4.58 16 7 C 0.53 22.10 7.53 87.65 0.66 22.76 16 8 O -0.58 -25.69 15.74 -3.09 -0.05 -25.74 16 9 N -0.56 -24.39 2.51 -635.26 -1.59 -25.99 16 10 C 0.25 12.20 4.88 85.63 0.42 12.62 16 11 C -0.55 -28.83 9.16 25.60 0.23 -28.59 16 12 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 13 C 0.03 1.45 5.46 84.65 0.46 1.91 16 14 N -0.92 -50.46 13.29 21.45 0.28 -50.18 16 15 Si 0.95 42.62 29.54 68.60 2.03 44.65 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 17 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 19 C 0.15 6.25 4.75 38.09 0.18 6.43 16 20 C -0.12 -4.38 9.68 22.39 0.22 -4.16 16 21 C -0.10 -2.99 9.95 22.36 0.22 -2.77 16 22 C 0.04 1.24 6.49 22.57 0.15 1.39 16 23 C 0.05 1.96 6.49 22.55 0.15 2.10 16 24 C -0.12 -5.11 9.46 22.49 0.21 -4.90 16 25 O -0.33 -10.32 10.42 -82.61 -0.86 -11.18 16 26 C 0.01 0.21 7.26 72.14 0.52 0.73 16 27 C 0.02 0.28 7.26 72.14 0.52 0.80 16 28 O -0.31 -8.22 10.42 -83.67 -0.87 -9.09 16 29 H 0.26 2.91 7.80 -4.42 -0.03 2.87 16 30 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.06 1.85 8.10 -2.39 -0.02 1.83 16 33 H 0.07 1.99 8.10 -2.39 -0.02 1.97 16 34 H 0.11 3.82 7.26 -2.39 -0.02 3.80 16 35 H 0.10 4.07 7.91 -2.39 -0.02 4.05 16 36 H 0.04 2.07 6.47 -2.38 -0.02 2.05 16 37 H 0.03 1.37 7.86 -2.39 -0.02 1.35 16 38 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 39 H 0.14 4.68 8.06 -2.91 -0.02 4.65 16 40 H 0.17 3.96 8.06 -2.91 -0.02 3.94 16 41 H 0.11 4.93 8.06 -2.91 -0.02 4.90 16 42 H 0.16 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.16 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -70.50 393.91 5.17 -65.33 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: 1.00 Total: 22.80 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 6.77 Total: 3.89 kcal Atomic # 7 Polarization: -74.86 SS G_CDS: -1.31 Total: -76.16 kcal Atomic # 8 Polarization: -57.19 SS G_CDS: -3.32 Total: -60.50 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -70.50 5.17 -65.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130218123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.318 kcal (2) G-P(sol) polarization free energy of solvation -70.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds