Wall clock time and date at job start Wed Apr 1 2020 03:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 113.99814 * 2 1 4 4 C 1.52997 * 109.47078 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47384 * 184.99698 * 4 3 2 6 6 N 1.46497 * 109.47429 * 64.99860 * 4 3 2 7 7 C 1.34776 * 120.00041 * 154.99921 * 6 4 3 8 8 O 1.21273 * 120.00354 * 0.02562 * 7 6 4 9 9 C 1.50706 * 119.99608 * 180.02562 * 7 6 4 10 10 C 1.50703 * 109.46856 * 179.97438 * 9 7 6 11 11 C 1.38300 * 119.93099 * 269.72904 * 10 9 7 12 12 C 1.38099 * 120.06450 * 179.72710 * 11 10 9 13 13 C 1.38880 * 119.93540 * 0.56711 * 12 11 10 14 14 O 1.35748 * 120.07256 * 179.68350 * 13 12 11 15 15 C 1.34826 * 117.00124 * 174.48743 * 14 13 12 16 16 H 1.07999 * 119.99969 * 5.05589 * 15 14 13 17 17 C 1.38652 * 120.00182 * 185.05582 * 15 14 13 18 18 N 1.31557 * 119.99864 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00303 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46988 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47350 * 119.99895 * 19 17 15 22 22 H 1.48500 * 109.47448 * 240.00569 * 19 17 15 23 23 C 1.38880 * 119.85604 * 359.70554 * 13 12 11 24 24 C 1.38094 * 119.93756 * 359.97438 * 23 13 12 25 25 C 1.50703 * 109.47499 * 304.99393 * 4 3 2 26 26 C 1.34507 * 125.79654 * 260.00482 * 25 4 3 27 27 C 1.41382 * 106.84625 * 180.02562 * 26 25 4 28 28 C 1.34512 * 106.83589 * 0.02562 * 27 26 25 29 29 O 1.34303 * 108.42417 * 359.97438 * 28 27 26 30 30 H 1.09002 * 109.46909 * 60.00636 * 1 2 3 31 31 H 1.09003 * 109.46620 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47546 * 299.99995 * 1 2 3 33 33 H 1.09001 * 109.47849 * 59.99656 * 3 2 1 34 34 H 1.09003 * 109.47071 * 299.99743 * 3 2 1 35 35 H 0.96995 * 120.00001 * 335.00312 * 6 4 3 36 36 H 1.09001 * 109.47230 * 299.99676 * 9 7 6 37 37 H 1.08998 * 109.46915 * 60.00200 * 9 7 6 38 38 H 1.07995 * 119.96719 * 359.97438 * 11 10 9 39 39 H 1.08005 * 120.03323 * 180.27196 * 12 11 10 40 40 H 0.97003 * 120.00018 * 179.97438 * 18 17 15 41 41 H 1.08007 * 120.02908 * 179.97438 * 23 13 12 42 42 H 1.07989 * 119.97017 * 179.97438 * 24 23 13 43 43 H 1.08001 * 126.57871 * 359.97438 * 26 25 4 44 44 H 1.07991 * 126.58203 * 180.02562 * 27 26 25 45 45 H 1.08003 * 125.78700 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9784 2.1766 0.0902 6 7 3.9767 0.5640 -1.2508 7 6 5.2209 0.7940 -1.7150 8 8 5.9753 1.5144 -1.0965 9 6 5.6746 0.1559 -3.0027 10 6 7.0932 0.5710 -3.2965 11 6 7.3386 1.7059 -4.0478 12 6 8.6376 2.0920 -4.3139 13 6 9.6979 1.3329 -3.8361 14 8 10.9757 1.7063 -4.1015 15 6 11.9567 0.9920 -3.5138 16 1 11.7122 0.1157 -2.9318 17 6 13.2794 1.3825 -3.6567 18 7 13.5772 2.4502 -4.3652 19 14 14.6385 0.3934 -2.8420 20 1 14.0446 -0.7525 -2.1074 21 1 15.5713 -0.1146 -3.8797 22 1 15.3801 1.2603 -1.8914 23 6 9.4480 0.1907 -3.0867 24 6 8.1470 -0.1866 -2.8184 25 6 3.9715 0.3329 1.1649 26 6 4.4492 0.7878 2.3371 27 6 4.7314 -0.3465 3.1324 28 6 4.4098 -1.4268 2.3984 29 8 3.9498 -1.0093 1.2077 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6886 1.8465 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.3734 -0.0125 -1.7453 36 1 5.6253 -0.9289 -2.9078 37 1 5.0258 0.4793 -3.8167 38 1 6.5136 2.2930 -4.4234 39 1 8.8286 2.9808 -4.8970 40 1 14.5026 2.7236 -4.4649 41 1 10.2705 -0.4020 -2.7141 42 1 7.9520 -1.0749 -2.2361 43 1 4.5908 1.8213 2.6168 44 1 5.1289 -0.3457 4.1365 45 1 4.5053 -2.4555 2.7132 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173757437.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:03 Heat of formation + Delta-G solvation = -61.980218 kcal Electronic energy + Delta-G solvation = -29215.225629 eV Core-core repulsion = 24972.876818 eV Total energy + Delta-G solvation = -4242.348811 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.59234 -39.87227 -38.85297 -38.24335 -36.48460 -35.09303 -33.04059 -32.44940 -31.75248 -30.56190 -30.07332 -28.59030 -26.87637 -26.25240 -25.05396 -23.37773 -21.90508 -21.86728 -21.25438 -20.29112 -20.03443 -17.91604 -17.84504 -17.16573 -17.06801 -16.79386 -16.46263 -15.88336 -15.64488 -15.30436 -15.02381 -14.58788 -14.43618 -14.19778 -13.88377 -13.56952 -13.32116 -13.31283 -13.21335 -12.84642 -12.71491 -12.69600 -12.61467 -12.37591 -12.05973 -11.83864 -11.71405 -11.43973 -11.22108 -10.79931 -10.69596 -10.53931 -10.37123 -10.19076 -9.93093 -9.71837 -9.33648 -9.25425 -8.76823 -8.52135 -8.07738 -7.09419 -6.39119 -3.97362 1.67485 2.31016 2.32913 2.55541 2.71211 2.93278 3.15419 3.18031 3.23194 3.23811 3.30750 4.02154 4.35292 4.50020 4.60195 4.84238 4.85078 4.94791 4.96860 4.99452 5.02011 5.06876 5.14838 5.20656 5.27164 5.32725 5.39922 5.46614 5.72667 5.73877 5.81115 5.82871 5.91733 6.00800 6.23083 6.28736 6.43807 6.49120 6.64657 6.77468 6.98624 7.11635 7.13081 7.30815 7.44570 7.46916 7.52281 7.91162 8.06631 8.32818 9.06923 9.77998 10.79200 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016096 B = 0.002254 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.100981 B =12418.031174 C =13549.720027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.053 3.947 4 C 0.233 3.767 5 H 0.129 0.871 6 N -0.731 5.731 7 C 0.511 3.489 8 O -0.515 6.515 9 C -0.078 4.078 10 C -0.169 4.169 11 C -0.060 4.060 12 C -0.192 4.192 13 C 0.157 3.843 14 O -0.179 6.179 15 C -0.389 4.389 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.864 5.864 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.232 4.232 24 C -0.056 4.056 25 C -0.009 4.009 26 C -0.205 4.205 27 C -0.215 4.215 28 C -0.045 4.045 29 O -0.157 6.157 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.041 0.959 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.406 0.594 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.269 0.731 41 H 0.126 0.874 42 H 0.103 0.897 43 H 0.146 0.854 44 H 0.145 0.855 45 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.041 -5.947 9.773 29.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.024 4.024 4 C 0.127 3.873 5 H 0.146 0.854 6 N -0.385 5.385 7 C 0.298 3.702 8 O -0.388 6.388 9 C -0.118 4.118 10 C -0.171 4.171 11 C -0.078 4.078 12 C -0.211 4.211 13 C 0.103 3.897 14 O -0.083 6.083 15 C -0.466 4.466 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.499 5.499 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.251 4.251 24 C -0.074 4.074 25 C -0.061 4.061 26 C -0.225 4.225 27 C -0.234 4.234 28 C -0.113 4.113 29 O -0.051 6.051 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.241 0.759 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.126 0.874 39 H 0.134 0.866 40 H 0.078 0.922 41 H 0.144 0.856 42 H 0.121 0.879 43 H 0.163 0.837 44 H 0.163 0.837 45 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -26.139 -5.451 9.756 28.428 hybrid contribution 0.314 -0.542 0.686 0.929 sum -25.825 -5.993 10.442 28.493 Atomic orbital electron populations 1.22759 0.80739 1.02980 1.00009 1.87975 1.19818 1.26719 1.95411 1.22897 0.91616 0.86008 1.01899 1.19516 0.92261 0.95416 0.80124 0.85380 1.46075 1.15967 1.52362 1.24105 1.21156 0.80592 0.81080 0.87334 1.90755 1.52723 1.36512 1.58810 1.20396 0.95987 1.01144 0.94278 1.18632 0.92162 0.99599 1.06669 1.20389 0.95275 0.95000 0.97125 1.20149 0.90780 1.02083 1.08081 1.19380 0.86238 0.92027 0.92060 1.83973 1.09975 1.52956 1.61353 1.21374 0.84579 1.09207 1.31404 0.89058 1.25284 0.97456 0.96765 0.97112 1.70053 1.19386 1.23141 1.37334 0.85650 0.80007 0.79051 0.78735 1.19120 1.20193 1.20168 1.21105 0.96877 1.00241 1.06896 1.20511 0.92108 0.97912 0.96867 1.22555 1.04638 0.81345 0.97589 1.21551 1.06208 1.00307 0.94433 1.21776 1.07528 0.92216 1.01905 1.24013 1.03178 0.99995 0.84107 1.84036 1.64926 1.21787 1.34372 0.93910 0.89474 0.94044 0.91343 0.91377 0.75908 0.88923 0.88868 0.87377 0.86566 0.92153 0.85625 0.87894 0.83658 0.83680 0.78430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.15 9.81 -35.23 -0.35 -3.50 16 3 C 0.05 0.38 5.67 37.16 0.21 0.59 16 4 C 0.23 2.36 2.83 -69.08 -0.20 2.17 16 5 H 0.13 1.35 7.57 -51.93 -0.39 0.95 16 6 N -0.73 -7.73 5.04 -54.93 -0.28 -8.00 16 7 C 0.51 7.25 7.78 -10.98 -0.09 7.17 16 8 O -0.51 -9.78 15.70 5.56 0.09 -9.69 16 9 C -0.08 -1.02 5.83 -29.03 -0.17 -1.18 16 10 C -0.17 -3.04 4.38 -104.57 -0.46 -3.50 16 11 C -0.06 -1.12 9.69 -39.61 -0.38 -1.50 16 12 C -0.19 -4.27 9.99 -39.39 -0.39 -4.66 16 13 C 0.16 3.98 6.65 -39.11 -0.26 3.72 16 14 O -0.18 -5.30 9.76 0.06 0.00 -5.30 16 15 C -0.39 -11.27 9.49 30.89 0.29 -10.97 16 16 H 0.09 2.47 5.20 -52.49 -0.27 2.20 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -25.97 13.67 55.48 0.76 -25.21 16 19 Si 0.94 21.19 29.55 -169.99 -5.02 16.17 16 20 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 C -0.23 -5.37 9.17 -39.40 -0.36 -5.73 16 24 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 25 C -0.01 -0.11 5.67 -35.63 -0.20 -0.31 16 26 C -0.21 -2.48 10.80 -39.71 -0.43 -2.91 16 27 C -0.22 -2.40 10.91 -39.70 -0.43 -2.84 16 28 C -0.04 -0.48 12.09 29.42 0.36 -0.13 16 29 O -0.16 -2.00 10.52 5.71 0.06 -1.94 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.41 3.36 8.38 -40.82 -0.34 3.02 16 36 H 0.09 1.03 8.08 -51.93 -0.42 0.61 16 37 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 38 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.12 2.48 8.06 -52.48 -0.42 2.06 16 40 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.13 2.91 5.64 -52.48 -0.30 2.61 16 42 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 43 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 44 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.20 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 392.83 15.07 5.92 5.92 Total: -1.00 -36.97 392.83 -6.63 -43.59 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.93 Total: 7.28 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -1.88 Total: -19.32 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: 0.48 Total: -33.21 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.20 Total: -20.43 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.97 -6.63 -43.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173757437.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.387 kcal (2) G-P(sol) polarization free energy of solvation -36.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds