Wall clock time and date at job start Wed Apr 1 2020 03:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 113.99814 * 2 1 4 4 C 1.52997 * 109.47078 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47384 * 184.99698 * 4 3 2 6 6 N 1.46497 * 109.47429 * 64.99860 * 4 3 2 7 7 C 1.34776 * 120.00041 * 154.99921 * 6 4 3 8 8 O 1.21273 * 120.00354 * 0.02562 * 7 6 4 9 9 C 1.50706 * 119.99608 * 180.02562 * 7 6 4 10 10 C 1.50703 * 109.46856 * 179.97438 * 9 7 6 11 11 C 1.38300 * 119.93099 * 269.72904 * 10 9 7 12 12 C 1.38099 * 120.06450 * 179.72710 * 11 10 9 13 13 C 1.38880 * 119.93540 * 0.56711 * 12 11 10 14 14 O 1.35748 * 120.07256 * 179.68350 * 13 12 11 15 15 C 1.34826 * 117.00124 * 174.48743 * 14 13 12 16 16 H 1.07999 * 119.99969 * 5.05589 * 15 14 13 17 17 C 1.38652 * 120.00182 * 185.05582 * 15 14 13 18 18 N 1.31557 * 119.99864 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00303 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46988 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47350 * 119.99895 * 19 17 15 22 22 H 1.48500 * 109.47448 * 240.00569 * 19 17 15 23 23 C 1.38880 * 119.85604 * 359.70554 * 13 12 11 24 24 C 1.38094 * 119.93756 * 359.97438 * 23 13 12 25 25 C 1.50703 * 109.47499 * 304.99393 * 4 3 2 26 26 C 1.34507 * 125.79654 * 260.00482 * 25 4 3 27 27 C 1.41382 * 106.84625 * 180.02562 * 26 25 4 28 28 C 1.34512 * 106.83589 * 0.02562 * 27 26 25 29 29 O 1.34303 * 108.42417 * 359.97438 * 28 27 26 30 30 H 1.09002 * 109.46909 * 60.00636 * 1 2 3 31 31 H 1.09003 * 109.46620 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47546 * 299.99995 * 1 2 3 33 33 H 1.09001 * 109.47849 * 59.99656 * 3 2 1 34 34 H 1.09003 * 109.47071 * 299.99743 * 3 2 1 35 35 H 0.96995 * 120.00001 * 335.00312 * 6 4 3 36 36 H 1.09001 * 109.47230 * 299.99676 * 9 7 6 37 37 H 1.08998 * 109.46915 * 60.00200 * 9 7 6 38 38 H 1.07995 * 119.96719 * 359.97438 * 11 10 9 39 39 H 1.08005 * 120.03323 * 180.27196 * 12 11 10 40 40 H 0.97003 * 120.00018 * 179.97438 * 18 17 15 41 41 H 1.08007 * 120.02908 * 179.97438 * 23 13 12 42 42 H 1.07989 * 119.97017 * 179.97438 * 24 23 13 43 43 H 1.08001 * 126.57871 * 359.97438 * 26 25 4 44 44 H 1.07991 * 126.58203 * 180.02562 * 27 26 25 45 45 H 1.08003 * 125.78700 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9784 2.1766 0.0902 6 7 3.9767 0.5640 -1.2508 7 6 5.2209 0.7940 -1.7150 8 8 5.9753 1.5144 -1.0965 9 6 5.6746 0.1559 -3.0027 10 6 7.0932 0.5710 -3.2965 11 6 7.3386 1.7059 -4.0478 12 6 8.6376 2.0920 -4.3139 13 6 9.6979 1.3329 -3.8361 14 8 10.9757 1.7063 -4.1015 15 6 11.9567 0.9920 -3.5138 16 1 11.7122 0.1157 -2.9318 17 6 13.2794 1.3825 -3.6567 18 7 13.5772 2.4502 -4.3652 19 14 14.6385 0.3934 -2.8420 20 1 14.0446 -0.7525 -2.1074 21 1 15.5713 -0.1146 -3.8797 22 1 15.3801 1.2603 -1.8914 23 6 9.4480 0.1907 -3.0867 24 6 8.1470 -0.1866 -2.8184 25 6 3.9715 0.3329 1.1649 26 6 4.4492 0.7878 2.3371 27 6 4.7314 -0.3465 3.1324 28 6 4.4098 -1.4268 2.3984 29 8 3.9498 -1.0093 1.2077 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6886 1.8465 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.3734 -0.0125 -1.7453 36 1 5.6253 -0.9289 -2.9078 37 1 5.0258 0.4793 -3.8167 38 1 6.5136 2.2930 -4.4234 39 1 8.8286 2.9808 -4.8970 40 1 14.5026 2.7236 -4.4649 41 1 10.2705 -0.4020 -2.7141 42 1 7.9520 -1.0749 -2.2361 43 1 4.5908 1.8213 2.6168 44 1 5.1289 -0.3457 4.1365 45 1 4.5053 -2.4555 2.7132 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173757437.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:02 Heat of formation + Delta-G solvation = -88.137231 kcal Electronic energy + Delta-G solvation = -29216.359882 eV Core-core repulsion = 24972.876818 eV Total energy + Delta-G solvation = -4243.483064 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.44436 -41.11224 -40.43975 -38.97430 -38.17281 -36.02757 -34.40263 -33.91331 -33.09500 -31.80263 -31.64129 -29.30218 -28.18714 -27.19201 -26.72623 -24.14808 -23.63014 -22.84387 -22.51241 -21.41350 -21.08443 -19.84133 -18.89128 -18.63689 -18.09675 -17.69067 -17.14325 -16.72320 -16.57250 -16.48994 -16.28318 -15.92159 -15.79395 -15.64744 -15.48649 -15.15177 -14.74849 -14.44365 -14.28780 -14.08989 -13.90648 -13.70331 -13.60112 -13.45275 -13.16479 -12.97630 -12.81330 -12.71413 -12.47858 -12.27375 -12.24922 -12.19271 -12.10588 -11.17709 -10.98955 -10.81096 -10.76113 -10.62228 -10.30169 -9.75665 -9.36708 -8.89380 -8.47772 -6.15655 0.62219 0.66705 0.83544 1.33176 1.41828 1.51925 1.65583 1.71457 2.05529 2.17085 2.32892 2.76591 2.85279 3.17697 3.53040 3.64147 3.84858 3.88885 4.05483 4.11647 4.17265 4.20883 4.26067 4.34230 4.45354 4.49728 4.51934 4.59564 4.60919 4.63813 4.72269 4.81521 4.91873 4.93905 4.98538 5.09679 5.14991 5.20901 5.30716 5.35742 5.57176 5.61688 5.72131 5.78882 6.03014 6.16758 6.23307 6.27437 6.58981 6.96937 7.31885 7.78396 8.75883 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016096 B = 0.002254 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.100981 B =12418.031174 C =13549.720027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.403 6.403 3 C 0.060 3.940 4 C 0.228 3.772 5 H 0.121 0.879 6 N -0.710 5.710 7 C 0.514 3.486 8 O -0.572 6.572 9 C -0.077 4.077 10 C -0.144 4.144 11 C -0.055 4.055 12 C -0.205 4.205 13 C 0.112 3.888 14 O -0.233 6.233 15 C -0.413 4.413 16 H 0.098 0.902 17 C -0.025 4.025 18 N -0.921 5.921 19 Si 1.020 2.980 20 H -0.254 1.254 21 H -0.265 1.265 22 H -0.268 1.268 23 C -0.244 4.244 24 C -0.062 4.062 25 C -0.022 4.022 26 C -0.228 4.228 27 C -0.232 4.232 28 C -0.049 4.049 29 O -0.171 6.171 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.420 0.580 36 H 0.122 0.878 37 H 0.137 0.863 38 H 0.151 0.849 39 H 0.114 0.886 40 H 0.273 0.727 41 H 0.115 0.885 42 H 0.132 0.868 43 H 0.151 0.849 44 H 0.162 0.838 45 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.434 -7.869 10.504 33.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.322 6.322 3 C -0.017 4.017 4 C 0.123 3.877 5 H 0.139 0.861 6 N -0.364 5.364 7 C 0.302 3.698 8 O -0.450 6.450 9 C -0.116 4.116 10 C -0.145 4.145 11 C -0.073 4.073 12 C -0.224 4.224 13 C 0.062 3.938 14 O -0.140 6.140 15 C -0.489 4.489 16 H 0.116 0.884 17 C -0.222 4.222 18 N -0.559 5.559 19 Si 0.839 3.161 20 H -0.177 1.177 21 H -0.189 1.189 22 H -0.193 1.193 23 C -0.264 4.264 24 C -0.080 4.080 25 C -0.074 4.074 26 C -0.248 4.248 27 C -0.251 4.251 28 C -0.116 4.116 29 O -0.066 6.066 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.258 0.742 36 H 0.141 0.859 37 H 0.154 0.846 38 H 0.169 0.831 39 H 0.132 0.868 40 H 0.082 0.918 41 H 0.133 0.867 42 H 0.149 0.851 43 H 0.169 0.831 44 H 0.179 0.821 45 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -29.647 -7.412 10.485 32.308 hybrid contribution 0.940 0.009 0.526 1.078 sum -28.707 -7.403 11.011 31.625 Atomic orbital electron populations 1.22900 0.79265 1.03682 1.00984 1.87932 1.21429 1.27208 1.95638 1.22864 0.89278 0.86066 1.03488 1.19670 0.94360 0.94544 0.79151 0.86144 1.45865 1.14960 1.51613 1.23986 1.21240 0.81036 0.80263 0.87231 1.90762 1.54448 1.39259 1.60500 1.20525 0.92957 1.02969 0.95173 1.19240 0.94676 0.97627 1.02989 1.20889 0.94747 0.95403 0.96230 1.20460 0.91793 1.02017 1.08147 1.19939 0.85762 0.93872 0.94242 1.83933 1.11552 1.54728 1.63764 1.21835 0.85359 1.09769 1.31952 0.88441 1.26604 0.99891 0.98037 0.97650 1.70192 1.20197 1.25623 1.39891 0.84522 0.76141 0.77601 0.77864 1.17723 1.18940 1.19342 1.21201 0.98408 0.99736 1.07019 1.20897 0.91095 0.99190 0.96828 1.22898 1.04777 0.81468 0.98255 1.21863 1.06713 1.01083 0.95143 1.22109 1.07932 0.92195 1.02850 1.24714 1.02099 1.01435 0.83382 1.84021 1.65325 1.21977 1.35256 0.92423 0.88998 0.93567 0.90328 0.89165 0.74185 0.85949 0.84558 0.83126 0.86797 0.91823 0.86737 0.85051 0.83145 0.82084 0.75222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.40 -5.50 9.81 -148.98 -1.46 -6.96 16 3 C 0.06 0.68 5.67 71.98 0.41 1.09 16 4 C 0.23 4.15 2.83 44.25 0.13 4.27 16 5 H 0.12 2.39 7.57 -2.39 -0.02 2.37 16 6 N -0.71 -12.58 5.04 -446.10 -2.25 -14.83 16 7 C 0.51 12.84 7.78 87.66 0.68 13.52 16 8 O -0.57 -20.75 15.70 -3.01 -0.05 -20.80 16 9 C -0.08 -1.61 5.83 29.10 0.17 -1.44 16 10 C -0.14 -4.73 4.38 -19.83 -0.09 -4.81 16 11 C -0.05 -1.94 9.69 22.25 0.22 -1.72 16 12 C -0.20 -9.30 9.99 22.39 0.22 -9.08 16 13 C 0.11 5.97 6.65 22.58 0.15 6.12 16 14 O -0.23 -14.77 9.76 -22.69 -0.22 -14.99 16 15 C -0.41 -25.31 9.49 67.92 0.64 -24.66 16 16 H 0.10 5.57 5.20 -2.91 -0.02 5.55 16 17 C -0.02 -1.46 5.49 84.83 0.47 -0.99 16 18 N -0.92 -58.37 13.67 21.61 0.30 -58.07 16 19 Si 1.02 44.80 29.55 68.60 2.03 46.83 16 20 H -0.25 -10.41 7.11 99.48 0.71 -9.71 16 21 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 23 C -0.24 -11.60 9.17 22.39 0.21 -11.40 16 24 C -0.06 -2.36 9.69 22.25 0.22 -2.14 16 25 C -0.02 -0.51 5.67 24.83 0.14 -0.37 16 26 C -0.23 -5.37 10.80 22.19 0.24 -5.13 16 27 C -0.23 -4.91 10.91 22.19 0.24 -4.67 16 28 C -0.05 -0.96 12.09 66.97 0.81 -0.15 16 29 O -0.17 -4.02 10.52 -2.50 -0.03 -4.05 16 30 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.08 0.74 8.14 -2.39 -0.02 0.73 16 34 H 0.09 0.63 8.14 -2.39 -0.02 0.62 16 35 H 0.42 5.11 8.38 -92.71 -0.78 4.33 16 36 H 0.12 1.97 8.08 -2.39 -0.02 1.95 16 37 H 0.14 1.80 8.08 -2.39 -0.02 1.79 16 38 H 0.15 4.03 8.06 -2.91 -0.02 4.00 16 39 H 0.11 5.07 8.06 -2.91 -0.02 5.05 16 40 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 41 H 0.11 5.55 5.64 -2.91 -0.02 5.54 16 42 H 0.13 4.20 8.06 -2.92 -0.02 4.18 16 43 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 44 H 0.16 2.69 8.06 -2.92 -0.02 2.67 16 45 H 0.23 2.61 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -87.66 392.83 4.66 -82.99 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: 0.25 Total: 29.97 kcal Atomic # 6 Polarization: -46.20 SS G_CDS: 6.10 Total: -40.10 kcal Atomic # 7 Polarization: -70.95 SS G_CDS: -1.95 Total: -72.90 kcal Atomic # 8 Polarization: -45.04 SS G_CDS: -1.76 Total: -46.80 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -87.66 4.66 -82.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173757437.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.145 kcal (2) G-P(sol) polarization free energy of solvation -87.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds