Wall clock time and date at job start Wed Apr 1 2020 03:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 113.99789 * 2 1 4 4 C 1.52998 * 109.46964 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47316 * 175.00046 * 4 3 2 6 6 N 1.46504 * 109.46858 * 295.00049 * 4 3 2 7 7 C 1.34776 * 119.99609 * 205.00144 * 6 4 3 8 8 O 1.21284 * 120.00342 * 359.97438 * 7 6 4 9 9 C 1.50701 * 120.00112 * 180.02562 * 7 6 4 10 10 C 1.50696 * 109.47515 * 179.97438 * 9 7 6 11 11 C 1.38301 * 119.93326 * 269.72481 * 10 9 7 12 12 C 1.38094 * 120.07227 * 179.72663 * 11 10 9 13 13 C 1.38878 * 119.92727 * 0.56447 * 12 11 10 14 14 O 1.35752 * 120.06871 * 179.68249 * 13 12 11 15 15 C 1.34833 * 116.99899 * 174.49080 * 14 13 12 16 16 H 1.07992 * 120.00195 * 5.06204 * 15 14 13 17 17 C 1.38655 * 119.99760 * 185.05746 * 15 14 13 18 18 N 1.31562 * 119.99747 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00163 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47020 * 90.00055 * 19 17 15 21 21 H 1.48498 * 109.46963 * 209.99504 * 19 17 15 22 22 H 1.48495 * 109.47192 * 329.99776 * 19 17 15 23 23 C 1.38879 * 119.86422 * 359.70997 * 13 12 11 24 24 C 1.38104 * 119.93115 * 359.97438 * 23 13 12 25 25 C 1.50695 * 109.47338 * 55.00050 * 4 3 2 26 26 C 1.34511 * 125.79245 * 100.00188 * 25 4 3 27 27 C 1.41386 * 106.84321 * 180.02562 * 26 25 4 28 28 C 1.34515 * 106.83951 * 359.97438 * 27 26 25 29 29 O 1.34296 * 108.41957 * 359.74006 * 28 27 26 30 30 H 1.09000 * 109.47702 * 59.99577 * 1 2 3 31 31 H 1.09007 * 109.47420 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46898 * 299.99803 * 1 2 3 33 33 H 1.08995 * 109.47358 * 300.00221 * 3 2 1 34 34 H 1.09002 * 109.47030 * 60.00387 * 3 2 1 35 35 H 0.96990 * 120.00247 * 25.00468 * 6 4 3 36 36 H 1.08996 * 109.46819 * 300.00168 * 9 7 6 37 37 H 1.08999 * 109.47149 * 59.99078 * 9 7 6 38 38 H 1.08003 * 119.96054 * 359.97438 * 11 10 9 39 39 H 1.07997 * 120.04128 * 180.27805 * 12 11 10 40 40 H 0.96998 * 120.00035 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.03641 * 179.97438 * 23 13 12 42 42 H 1.07997 * 119.96793 * 179.97438 * 24 23 13 43 43 H 1.07997 * 126.57708 * 0.02960 * 26 25 4 44 44 H 1.08002 * 126.57724 * 179.97438 * 27 26 25 45 45 H 1.07993 * 125.78778 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9784 2.1765 -0.0902 6 7 3.9766 0.5640 1.2509 7 6 5.2208 0.7940 1.7152 8 8 5.9753 1.5145 1.0966 9 6 5.6749 0.1551 3.0023 10 6 7.0938 0.5694 3.2955 11 6 8.1469 -0.1918 2.8219 12 6 9.4483 0.1883 3.0841 13 6 9.6990 1.3298 3.8343 14 8 10.9771 1.7025 4.0993 15 6 11.1526 2.8794 4.7335 16 1 10.2964 3.4392 5.0795 17 6 12.4324 3.3707 4.9416 18 7 12.6036 4.5192 5.5600 19 14 13.9134 2.4025 4.3426 20 1 14.2479 2.8168 2.9563 21 1 15.0721 2.6696 5.2321 22 1 13.5976 0.9517 4.3631 23 6 8.6393 2.0890 4.3134 24 6 7.3401 1.7072 4.0422 25 6 3.9714 0.3329 -1.1648 26 6 4.4492 0.7877 -2.3370 27 6 4.7302 -0.3466 -3.1327 28 6 4.4078 -1.4269 -2.3989 29 8 3.9545 -1.0095 -1.2057 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 1.6886 1.8463 0.8900 35 1 3.3733 -0.0125 1.7454 36 1 5.0261 0.4776 3.8166 37 1 5.6258 -0.9296 2.9066 38 1 7.9512 -1.0822 2.2428 39 1 10.2703 -0.4040 2.7102 40 1 13.4989 4.8627 5.7058 41 1 8.8310 2.9770 4.8974 42 1 6.5156 2.2969 4.4148 43 1 4.5910 1.8212 -2.6167 44 1 5.1275 -0.3459 -4.1370 45 1 4.5023 -2.4555 -2.7140 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173757452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:05 Heat of formation + Delta-G solvation = -60.211753 kcal Electronic energy + Delta-G solvation = -29208.213762 eV Core-core repulsion = 24965.941637 eV Total energy + Delta-G solvation = -4242.272125 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.62221 -39.92596 -38.99735 -38.28699 -36.65432 -35.12868 -33.07051 -32.49238 -31.89733 -30.68364 -30.16862 -28.61740 -27.02227 -26.36286 -24.88585 -23.39026 -22.04944 -21.88441 -21.24532 -20.31039 -20.04765 -17.90903 -17.80326 -17.28203 -17.12608 -16.99145 -16.48807 -15.91560 -15.68896 -15.33945 -15.09772 -14.72359 -14.47043 -14.09336 -13.82136 -13.72012 -13.47009 -13.33193 -13.25672 -12.87442 -12.73500 -12.66472 -12.60985 -12.42469 -12.15197 -12.07777 -11.78142 -11.57934 -11.25105 -10.88412 -10.71224 -10.62133 -10.20560 -10.10922 -9.96021 -9.76336 -9.37046 -9.32790 -8.81149 -8.55162 -8.17202 -7.24687 -6.36829 -4.02984 1.64407 2.20621 2.22217 2.52286 2.67189 2.89934 3.18051 3.25737 3.28269 3.30478 3.44485 4.28352 4.33129 4.48010 4.51538 4.82575 4.83228 4.90870 4.92925 4.95556 4.97474 4.98743 5.04525 5.16308 5.16603 5.25579 5.29748 5.40763 5.66179 5.70643 5.71805 5.79842 5.82388 5.97846 6.19103 6.19900 6.39405 6.40894 6.62971 6.63038 6.85841 7.07718 7.09966 7.28568 7.36560 7.43368 7.67871 7.85953 8.09420 8.28515 8.98758 9.61995 10.70949 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018275 B = 0.002172 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.759044 B =12886.205620 C =13569.681436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.053 3.947 4 C 0.233 3.767 5 H 0.129 0.871 6 N -0.730 5.730 7 C 0.512 3.488 8 O -0.515 6.515 9 C -0.080 4.080 10 C -0.161 4.161 11 C -0.061 4.061 12 C -0.191 4.191 13 C 0.162 3.838 14 O -0.219 6.219 15 C -0.388 4.388 16 H 0.106 0.894 17 C 0.062 3.938 18 N -0.881 5.881 19 Si 0.905 3.095 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.260 1.260 23 C -0.219 4.219 24 C -0.058 4.058 25 C -0.009 4.009 26 C -0.205 4.205 27 C -0.215 4.215 28 C -0.045 4.045 29 O -0.157 6.157 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.406 0.594 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.279 0.721 41 H 0.133 0.867 42 H 0.107 0.893 43 H 0.146 0.854 44 H 0.145 0.855 45 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.732 -10.521 -12.349 30.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.024 4.024 4 C 0.127 3.873 5 H 0.147 0.853 6 N -0.385 5.385 7 C 0.299 3.701 8 O -0.388 6.388 9 C -0.120 4.120 10 C -0.162 4.162 11 C -0.079 4.079 12 C -0.210 4.210 13 C 0.110 3.890 14 O -0.124 6.124 15 C -0.463 4.463 16 H 0.124 0.876 17 C -0.141 4.141 18 N -0.519 5.519 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.184 1.184 23 C -0.239 4.239 24 C -0.076 4.076 25 C -0.061 4.061 26 C -0.225 4.225 27 C -0.234 4.234 28 C -0.113 4.113 29 O -0.051 6.051 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.241 0.759 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.089 0.911 41 H 0.150 0.850 42 H 0.125 0.875 43 H 0.164 0.836 44 H 0.163 0.837 45 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -24.758 -10.267 -12.494 29.571 hybrid contribution 0.237 -0.112 -0.348 0.435 sum -24.521 -10.379 -12.842 29.562 Atomic orbital electron populations 1.22761 0.80713 1.02984 1.00034 1.87970 1.19841 1.26718 1.95419 1.22897 0.91583 0.86014 1.01946 1.19523 0.92302 0.95421 0.80073 0.85349 1.46062 1.15938 1.52326 1.24125 1.21113 0.80656 0.81089 0.87273 1.90761 1.52766 1.36499 1.58807 1.20414 0.95897 1.01226 0.94452 1.18697 0.92303 0.99095 1.06107 1.20406 0.91581 0.98295 0.97649 1.20146 0.96637 0.98830 1.05389 1.19118 0.84546 0.92974 0.92358 1.83572 1.22146 1.38068 1.68581 1.20772 0.95883 0.94884 1.34793 0.87633 1.24466 0.98033 0.95542 0.96024 1.69650 1.23888 1.18036 1.40345 0.86179 0.80625 0.81314 0.78780 1.19900 1.20832 1.18374 1.21219 0.92070 1.03410 1.07151 1.20558 0.95880 0.94675 0.96510 1.22554 1.04612 0.81322 0.97608 1.21559 1.06148 1.00325 0.94468 1.21781 1.07509 0.92216 1.01913 1.24009 1.03292 0.99989 0.84022 1.84035 1.65179 1.21779 1.34139 0.94041 0.89466 0.93887 0.91317 0.91345 0.75877 0.88741 0.88785 0.87255 0.86583 0.91121 0.84974 0.87516 0.83641 0.83681 0.78431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.08 9.82 -35.23 -0.35 -3.42 16 3 C 0.05 0.37 5.67 37.16 0.21 0.58 16 4 C 0.23 2.30 2.83 -69.08 -0.20 2.11 16 5 H 0.13 1.33 7.57 -51.93 -0.39 0.93 16 6 N -0.73 -7.48 5.04 -54.93 -0.28 -7.76 16 7 C 0.51 7.03 7.78 -10.98 -0.09 6.95 16 8 O -0.52 -9.55 15.70 5.55 0.09 -9.46 16 9 C -0.08 -1.00 5.83 -29.04 -0.17 -1.16 16 10 C -0.16 -2.77 4.38 -104.58 -0.46 -3.23 16 11 C -0.06 -1.11 9.69 -39.61 -0.38 -1.50 16 12 C -0.19 -4.02 9.99 -39.40 -0.39 -4.41 16 13 C 0.16 3.92 6.65 -39.11 -0.26 3.66 16 14 O -0.22 -5.98 8.59 0.04 0.00 -5.98 16 15 C -0.39 -11.23 9.95 30.89 0.31 -10.93 16 16 H 0.11 3.12 5.44 -52.49 -0.29 2.83 16 17 C 0.06 1.79 5.49 -17.51 -0.10 1.69 16 18 N -0.88 -25.95 13.96 55.48 0.77 -25.17 16 19 Si 0.91 22.25 28.62 -169.99 -4.86 17.39 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.26 -6.40 7.11 56.52 0.40 -5.99 16 23 C -0.22 -4.94 9.17 -39.39 -0.36 -5.30 16 24 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 25 C -0.01 -0.10 5.67 -35.63 -0.20 -0.31 16 26 C -0.21 -2.40 10.80 -39.70 -0.43 -2.83 16 27 C -0.21 -2.31 10.91 -39.70 -0.43 -2.74 16 28 C -0.04 -0.46 12.09 29.42 0.36 -0.11 16 29 O -0.16 -1.92 10.53 5.71 0.06 -1.86 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.41 3.23 8.38 -40.82 -0.34 2.89 16 36 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 37 H 0.09 0.97 8.08 -51.93 -0.42 0.55 16 38 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 39 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 40 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.13 3.10 5.64 -52.49 -0.30 2.81 16 42 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 43 H 0.15 1.49 8.06 -52.49 -0.42 1.06 16 44 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 45 H 0.20 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 391.72 15.07 5.90 5.90 Total: -1.00 -35.78 391.72 -6.47 -42.25 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -5.94 Total: 5.85 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -1.86 Total: -17.73 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.50 Total: -32.93 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.20 Total: -20.73 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.86 Total: 17.39 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.78 -6.47 -42.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173757452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.965 kcal (2) G-P(sol) polarization free energy of solvation -35.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds