Wall clock time and date at job start Wed Apr 1 2020 03:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 113.99789 * 2 1 4 4 C 1.52998 * 109.46964 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47316 * 175.00046 * 4 3 2 6 6 N 1.46504 * 109.46858 * 295.00049 * 4 3 2 7 7 C 1.34776 * 119.99609 * 205.00144 * 6 4 3 8 8 O 1.21284 * 120.00342 * 359.97438 * 7 6 4 9 9 C 1.50701 * 120.00112 * 180.02562 * 7 6 4 10 10 C 1.50696 * 109.47515 * 179.97438 * 9 7 6 11 11 C 1.38301 * 119.93326 * 269.72481 * 10 9 7 12 12 C 1.38094 * 120.07227 * 179.72663 * 11 10 9 13 13 C 1.38878 * 119.92727 * 0.56447 * 12 11 10 14 14 O 1.35752 * 120.06871 * 179.68249 * 13 12 11 15 15 C 1.34833 * 116.99899 * 174.49080 * 14 13 12 16 16 H 1.07992 * 120.00195 * 5.06204 * 15 14 13 17 17 C 1.38655 * 119.99760 * 185.05746 * 15 14 13 18 18 N 1.31562 * 119.99747 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00163 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47020 * 90.00055 * 19 17 15 21 21 H 1.48498 * 109.46963 * 209.99504 * 19 17 15 22 22 H 1.48495 * 109.47192 * 329.99776 * 19 17 15 23 23 C 1.38879 * 119.86422 * 359.70997 * 13 12 11 24 24 C 1.38104 * 119.93115 * 359.97438 * 23 13 12 25 25 C 1.50695 * 109.47338 * 55.00050 * 4 3 2 26 26 C 1.34511 * 125.79245 * 100.00188 * 25 4 3 27 27 C 1.41386 * 106.84321 * 180.02562 * 26 25 4 28 28 C 1.34515 * 106.83951 * 359.97438 * 27 26 25 29 29 O 1.34296 * 108.41957 * 359.74006 * 28 27 26 30 30 H 1.09000 * 109.47702 * 59.99577 * 1 2 3 31 31 H 1.09007 * 109.47420 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46898 * 299.99803 * 1 2 3 33 33 H 1.08995 * 109.47358 * 300.00221 * 3 2 1 34 34 H 1.09002 * 109.47030 * 60.00387 * 3 2 1 35 35 H 0.96990 * 120.00247 * 25.00468 * 6 4 3 36 36 H 1.08996 * 109.46819 * 300.00168 * 9 7 6 37 37 H 1.08999 * 109.47149 * 59.99078 * 9 7 6 38 38 H 1.08003 * 119.96054 * 359.97438 * 11 10 9 39 39 H 1.07997 * 120.04128 * 180.27805 * 12 11 10 40 40 H 0.96998 * 120.00035 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.03641 * 179.97438 * 23 13 12 42 42 H 1.07997 * 119.96793 * 179.97438 * 24 23 13 43 43 H 1.07997 * 126.57708 * 0.02960 * 26 25 4 44 44 H 1.08002 * 126.57724 * 179.97438 * 27 26 25 45 45 H 1.07993 * 125.78778 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9784 2.1765 -0.0902 6 7 3.9766 0.5640 1.2509 7 6 5.2208 0.7940 1.7152 8 8 5.9753 1.5145 1.0966 9 6 5.6749 0.1551 3.0023 10 6 7.0938 0.5694 3.2955 11 6 8.1469 -0.1918 2.8219 12 6 9.4483 0.1883 3.0841 13 6 9.6990 1.3298 3.8343 14 8 10.9771 1.7025 4.0993 15 6 11.1526 2.8794 4.7335 16 1 10.2964 3.4392 5.0795 17 6 12.4324 3.3707 4.9416 18 7 12.6036 4.5192 5.5600 19 14 13.9134 2.4025 4.3426 20 1 14.2479 2.8168 2.9563 21 1 15.0721 2.6696 5.2321 22 1 13.5976 0.9517 4.3631 23 6 8.6393 2.0890 4.3134 24 6 7.3401 1.7072 4.0422 25 6 3.9714 0.3329 -1.1648 26 6 4.4492 0.7877 -2.3370 27 6 4.7302 -0.3466 -3.1327 28 6 4.4078 -1.4269 -2.3989 29 8 3.9545 -1.0095 -1.2057 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 1.6886 1.8463 0.8900 35 1 3.3733 -0.0125 1.7454 36 1 5.0261 0.4776 3.8166 37 1 5.6258 -0.9296 2.9066 38 1 7.9512 -1.0822 2.2428 39 1 10.2703 -0.4040 2.7102 40 1 13.4989 4.8627 5.7058 41 1 8.8310 2.9770 4.8974 42 1 6.5156 2.2969 4.4148 43 1 4.5910 1.8212 -2.6167 44 1 5.1275 -0.3459 -4.1370 45 1 4.5023 -2.4555 -2.7140 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173757452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:04 Heat of formation + Delta-G solvation = -84.972753 kcal Electronic energy + Delta-G solvation = -29209.287480 eV Core-core repulsion = 24965.941637 eV Total energy + Delta-G solvation = -4243.345842 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.43803 -41.16525 -40.52298 -38.99637 -38.26829 -36.03400 -34.51932 -33.91137 -33.20291 -31.84187 -31.68663 -29.31226 -28.37131 -27.12360 -26.59807 -24.14690 -23.70308 -22.81072 -22.47119 -21.39484 -21.08195 -19.81893 -19.12363 -18.64586 -18.11004 -17.71258 -17.14517 -16.79539 -16.62904 -16.58358 -16.15592 -15.94985 -15.71757 -15.69926 -15.50362 -15.21381 -14.84531 -14.40705 -14.28284 -14.10851 -14.04384 -13.93240 -13.69684 -13.44440 -13.18498 -13.03706 -12.82594 -12.73188 -12.50364 -12.40943 -12.32315 -12.20435 -11.93114 -11.27697 -11.01300 -10.86710 -10.78515 -10.63115 -10.30756 -9.78555 -9.36155 -8.97802 -8.50443 -6.22694 0.58871 0.61224 0.83904 1.29675 1.34477 1.50870 1.65278 1.71601 2.05420 2.27674 2.31839 2.75354 2.79513 3.05634 3.18643 3.64234 3.82965 3.87831 4.04354 4.09902 4.16201 4.19309 4.26760 4.33579 4.44621 4.48548 4.50955 4.58213 4.59479 4.63172 4.69849 4.81842 4.92404 4.93730 4.97861 5.00412 5.21448 5.25796 5.34543 5.37844 5.57144 5.62250 5.74294 5.80045 5.91334 6.16053 6.24588 6.27916 6.58108 6.83883 7.30909 7.58894 8.61322 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018275 B = 0.002172 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.759044 B =12886.205620 C =13569.681436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.060 3.940 4 C 0.228 3.772 5 H 0.120 0.880 6 N -0.710 5.710 7 C 0.514 3.486 8 O -0.572 6.572 9 C -0.079 4.079 10 C -0.136 4.136 11 C -0.061 4.061 12 C -0.194 4.194 13 C 0.118 3.882 14 O -0.247 6.247 15 C -0.399 4.399 16 H 0.080 0.920 17 C 0.008 3.992 18 N -0.923 5.923 19 Si 0.971 3.029 20 H -0.268 1.268 21 H -0.264 1.264 22 H -0.263 1.263 23 C -0.237 4.237 24 C -0.062 4.062 25 C -0.022 4.022 26 C -0.228 4.228 27 C -0.232 4.232 28 C -0.047 4.047 29 O -0.170 6.170 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.421 0.579 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.147 0.853 39 H 0.126 0.874 40 H 0.285 0.715 41 H 0.108 0.892 42 H 0.137 0.863 43 H 0.150 0.850 44 H 0.162 0.838 45 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.448 -13.202 -13.404 34.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.321 6.321 3 C -0.017 4.017 4 C 0.123 3.877 5 H 0.137 0.863 6 N -0.364 5.364 7 C 0.302 3.698 8 O -0.450 6.450 9 C -0.118 4.118 10 C -0.137 4.137 11 C -0.079 4.079 12 C -0.213 4.213 13 C 0.069 3.931 14 O -0.154 6.154 15 C -0.475 4.475 16 H 0.098 0.902 17 C -0.190 4.190 18 N -0.564 5.564 19 Si 0.793 3.207 20 H -0.193 1.193 21 H -0.189 1.189 22 H -0.187 1.187 23 C -0.256 4.256 24 C -0.080 4.080 25 C -0.073 4.073 26 C -0.248 4.248 27 C -0.251 4.251 28 C -0.115 4.115 29 O -0.065 6.065 30 H 0.064 0.936 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.258 0.742 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.165 0.835 39 H 0.144 0.856 40 H 0.094 0.906 41 H 0.126 0.874 42 H 0.154 0.846 43 H 0.167 0.833 44 H 0.179 0.821 45 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -27.567 -12.988 -13.550 33.350 hybrid contribution 0.680 0.585 -0.153 0.910 sum -26.887 -12.403 -13.703 32.627 Atomic orbital electron populations 1.22903 0.79273 1.03713 1.00954 1.87927 1.21412 1.27142 1.95634 1.22860 0.89368 0.86089 1.03423 1.19651 0.94290 0.94552 0.79234 0.86277 1.45862 1.14976 1.51591 1.23991 1.21229 0.81073 0.80273 0.87198 1.90767 1.54495 1.39198 1.60514 1.20544 0.92911 1.03292 0.95055 1.19280 0.95091 0.96971 1.02407 1.20906 0.90454 0.99462 0.97051 1.20474 0.98597 0.97737 1.04530 1.19663 0.84013 0.94842 0.94547 1.83511 1.23964 1.37561 1.70408 1.20716 0.95629 0.95803 1.35399 0.90212 1.25293 1.00733 0.96612 0.96335 1.69731 1.24875 1.19606 1.42203 0.85213 0.77420 0.79382 0.78651 1.19326 1.18857 1.18740 1.21260 0.93786 1.02941 1.07657 1.20918 0.94976 0.95626 0.96464 1.22847 1.04818 0.81481 0.98198 1.21863 1.06664 1.01083 0.95198 1.22106 1.07951 0.92157 1.02855 1.24720 1.02078 1.01431 0.83239 1.84019 1.65564 1.21886 1.35051 0.93580 0.88911 0.92502 0.90346 0.89325 0.74173 0.85026 0.85308 0.83503 0.85607 0.90568 0.87425 0.84550 0.83252 0.82075 0.75131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.45 16 2 O -0.40 -5.38 9.82 -148.98 -1.46 -6.84 16 3 C 0.06 0.68 5.67 71.98 0.41 1.09 16 4 C 0.23 4.08 2.83 44.24 0.13 4.20 16 5 H 0.12 2.36 7.57 -2.39 -0.02 2.34 16 6 N -0.71 -12.24 5.04 -446.10 -2.25 -14.49 16 7 C 0.51 12.47 7.78 87.66 0.68 13.15 16 8 O -0.57 -20.30 15.70 -3.04 -0.05 -20.35 16 9 C -0.08 -1.57 5.83 29.10 0.17 -1.40 16 10 C -0.14 -4.28 4.38 -19.84 -0.09 -4.36 16 11 C -0.06 -2.05 9.69 22.25 0.22 -1.83 16 12 C -0.19 -8.08 9.99 22.39 0.22 -7.86 16 13 C 0.12 5.91 6.65 22.58 0.15 6.06 16 14 O -0.25 -14.14 8.59 -22.79 -0.20 -14.34 16 15 C -0.40 -24.56 9.95 67.92 0.68 -23.88 16 16 H 0.08 5.13 5.44 -2.91 -0.02 5.12 16 17 C 0.01 0.50 5.49 84.83 0.47 0.97 16 18 N -0.92 -56.72 13.96 21.61 0.30 -56.42 16 19 Si 0.97 47.21 28.62 68.60 1.96 49.17 16 20 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 23 C -0.24 -11.10 9.17 22.39 0.21 -10.89 16 24 C -0.06 -2.26 9.69 22.25 0.22 -2.04 16 25 C -0.02 -0.48 5.67 24.83 0.14 -0.34 16 26 C -0.23 -5.18 10.80 22.19 0.24 -4.94 16 27 C -0.23 -4.65 10.91 22.19 0.24 -4.41 16 28 C -0.05 -0.87 12.09 66.97 0.81 -0.06 16 29 O -0.17 -3.81 10.53 -2.49 -0.03 -3.84 16 30 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.42 4.92 8.38 -92.72 -0.78 4.15 16 36 H 0.13 1.77 8.08 -2.39 -0.02 1.75 16 37 H 0.13 1.81 8.08 -2.39 -0.02 1.79 16 38 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 39 H 0.13 4.87 8.06 -2.91 -0.02 4.85 16 40 H 0.28 16.00 8.31 -92.71 -0.77 15.23 16 41 H 0.11 5.48 5.64 -2.91 -0.02 5.47 16 42 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 43 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 44 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 45 H 0.23 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -83.15 391.72 4.66 -78.49 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.25 Total: 23.71 kcal Atomic # 6 Polarization: -41.22 SS G_CDS: 6.13 Total: -35.09 kcal Atomic # 7 Polarization: -68.97 SS G_CDS: -1.95 Total: -70.91 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -1.73 Total: -45.37 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 1.96 Total: 49.17 kcal Total: -83.15 4.66 -78.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173757452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.483 kcal (2) G-P(sol) polarization free energy of solvation -83.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds