Wall clock time and date at job start Wed Apr 1 2020 03:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34227 * 116.99884 * 2 1 4 4 O 1.20829 * 120.00222 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00178 * 180.02562 * 3 2 1 6 6 C 1.52993 * 109.47630 * 181.46558 * 5 3 2 7 7 C 1.53007 * 115.55092 * 295.48972 * 6 5 3 8 8 S 1.81405 * 109.46848 * 294.35303 * 7 6 5 9 9 O 1.42103 * 110.54369 * 75.34616 * 8 7 6 10 10 O 1.42102 * 110.54187 * 298.59891 * 8 7 6 11 11 N 1.65593 * 104.44798 * 186.96969 * 8 7 6 12 12 C 1.46495 * 120.00253 * 269.72235 * 11 8 7 13 13 C 1.50700 * 109.47302 * 265.27773 * 12 11 8 14 14 H 1.07997 * 119.99877 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99893 * 179.97438 * 13 12 11 16 16 N 1.31520 * 120.00352 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00080 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47167 * 90.00041 * 17 15 13 19 19 H 1.48501 * 109.47194 * 210.00228 * 17 15 13 20 20 H 1.48505 * 109.47050 * 330.00071 * 17 15 13 21 21 C 1.46505 * 119.99917 * 90.00353 * 11 8 7 22 22 C 1.53003 * 109.46805 * 264.72313 * 21 11 8 23 23 C 1.53001 * 117.49740 * 243.74433 * 22 21 11 24 24 C 1.53005 * 117.49621 * 175.08698 * 22 21 11 25 25 C 1.53006 * 117.49969 * 81.15470 * 6 5 3 26 26 C 1.53001 * 117.50541 * 149.81437 * 6 5 3 27 27 H 1.08995 * 109.47210 * 60.00052 * 1 2 3 28 28 H 1.09002 * 109.47118 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46848 * 299.99972 * 1 2 3 30 30 H 1.09004 * 109.47442 * 61.46439 * 5 3 2 31 31 H 1.08998 * 109.47228 * 301.46786 * 5 3 2 32 32 H 1.08997 * 109.46939 * 174.35486 * 7 6 5 33 33 H 1.09002 * 109.46942 * 54.34762 * 7 6 5 34 34 H 1.09000 * 109.47003 * 25.28127 * 12 11 8 35 35 H 1.09002 * 109.47214 * 145.27392 * 12 11 8 36 36 H 0.96997 * 119.99710 * 180.02562 * 16 15 13 37 37 H 1.08998 * 109.47285 * 24.71804 * 21 11 8 38 38 H 1.08994 * 109.47397 * 144.72113 * 21 11 8 39 39 H 1.08999 * 115.54995 * 29.41666 * 22 21 11 40 40 H 1.09007 * 117.49840 * 0.02562 * 23 22 21 41 41 H 1.08996 * 117.50061 * 145.02249 * 23 22 21 42 42 H 1.09001 * 117.49699 * 214.97774 * 24 22 21 43 43 H 1.09002 * 117.49756 * 359.97438 * 24 22 21 44 44 H 1.09005 * 117.49716 * 215.00816 * 25 6 5 45 45 H 1.08995 * 117.49358 * 0.02753 * 25 6 5 46 46 H 1.09006 * 117.49405 * 359.97438 * 26 6 5 47 47 H 1.08999 * 117.50249 * 144.99670 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0002 2.7416 0.0364 7 6 3.6155 3.5747 -1.1879 8 16 4.5046 2.9567 -2.6434 9 8 3.9284 1.7409 -3.1007 10 8 5.9084 3.0782 -2.4589 11 7 4.1533 4.0494 -3.8369 12 6 2.9860 3.8438 -4.6979 13 6 3.4104 3.1367 -5.9592 14 1 4.4460 2.8671 -6.1048 15 6 2.4764 2.8332 -6.9270 16 7 1.2152 3.1611 -6.7495 17 14 3.0023 1.9560 -8.4902 18 1 2.9068 0.4877 -8.2900 19 1 2.1137 2.3620 -9.6085 20 1 4.4047 2.3212 -8.8147 21 6 5.0134 5.2186 -4.0359 22 6 4.4298 6.4152 -3.2818 23 6 3.9702 7.6166 -4.1103 24 6 5.2462 7.7092 -3.2699 25 6 4.0028 3.4435 1.3960 26 6 5.3266 3.0689 0.7251 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.9546 0.8039 -0.9037 31 1 3.9576 0.7581 0.8757 32 1 3.8811 4.6177 -1.0157 33 1 2.5417 3.4964 -1.3578 34 1 2.2488 3.2373 -4.1718 35 1 2.5476 4.8088 -4.9523 36 1 0.5581 2.9471 -7.4302 37 1 6.0127 5.0032 -3.6578 38 1 5.0697 5.4516 -5.0992 39 1 3.8575 6.1729 -2.3863 40 1 4.0832 7.5543 -5.1927 41 1 3.0959 8.1648 -3.7598 42 1 5.2108 8.3183 -2.3666 43 1 6.1993 7.7078 -3.7989 44 1 3.7304 4.4987 1.4181 45 1 3.6958 2.8601 2.2640 46 1 5.8901 2.2392 1.1523 47 1 5.9253 3.8776 0.3060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175743422.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:28 Heat of formation + Delta-G solvation = -102.900036 kcal Electronic energy + Delta-G solvation = -30164.211698 eV Core-core repulsion = 26055.532421 eV Total energy + Delta-G solvation = -4108.679276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.57407 -38.32299 -37.62692 -36.47422 -36.21670 -35.29674 -34.72633 -32.33165 -30.50724 -28.94548 -27.83739 -27.18125 -25.34395 -22.65005 -22.41237 -22.08567 -21.71161 -20.48153 -19.35597 -18.19891 -17.61517 -16.99690 -16.74689 -16.50826 -16.39110 -15.89060 -15.55597 -15.27429 -14.85575 -14.62479 -14.36498 -14.13563 -13.62524 -13.57466 -13.24916 -12.67475 -12.50816 -12.40908 -12.30555 -12.12860 -11.84712 -11.70537 -11.66589 -11.46272 -11.37023 -11.32025 -11.14848 -11.04942 -11.04116 -10.78407 -10.77269 -10.72684 -10.55026 -10.25272 -10.16004 -10.01470 -9.71912 -9.60592 -9.49237 -8.39822 -8.01801 -6.01736 -4.04820 0.84552 2.23523 2.63205 3.32214 3.35206 3.40896 3.45273 3.62065 4.04862 4.23317 4.34184 4.44990 4.47651 4.61992 4.71700 4.76178 4.95882 5.02770 5.09856 5.17004 5.19403 5.21430 5.23675 5.33338 5.41223 5.45570 5.52399 5.52668 5.59277 5.69597 5.79313 5.80263 5.84732 5.98810 6.04046 6.11636 6.17368 6.34149 6.41649 6.51498 6.60426 7.27271 7.42803 7.63863 7.77127 7.95740 8.25847 8.97323 9.59529 11.06958 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008604 B = 0.005030 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3253.354195 B = 5565.245913 C = 7539.248380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.467 3.533 4 O -0.496 6.496 5 C -0.098 4.098 6 C -0.114 4.114 7 C -0.606 4.606 8 S 2.600 3.400 9 O -0.939 6.939 10 O -0.969 6.969 11 N -0.981 5.981 12 C 0.257 3.743 13 C -0.522 4.522 14 H 0.060 0.940 15 C 0.061 3.939 16 N -0.897 5.897 17 Si 0.895 3.105 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.150 3.850 22 C -0.173 4.173 23 C -0.172 4.172 24 C -0.182 4.182 25 C -0.148 4.148 26 C -0.163 4.163 27 H 0.068 0.932 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.129 0.871 33 H 0.144 0.856 34 H 0.035 0.965 35 H 0.038 0.962 36 H 0.262 0.738 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.106 0.894 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.980 1.782 16.495 17.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.309 3.691 4 O -0.383 6.383 5 C -0.135 4.135 6 C -0.115 4.115 7 C -0.732 4.732 8 S 2.692 3.308 9 O -0.929 6.929 10 O -0.960 6.960 11 N -0.818 5.818 12 C 0.135 3.865 13 C -0.562 4.562 14 H 0.079 0.921 15 C -0.140 4.140 16 N -0.536 5.536 17 Si 0.723 3.277 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.198 1.198 21 C 0.023 3.977 22 C -0.193 4.193 23 C -0.209 4.209 24 C -0.220 4.220 25 C -0.186 4.186 26 C -0.199 4.199 27 H 0.087 0.913 28 H 0.119 0.881 29 H 0.079 0.921 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.147 0.853 33 H 0.162 0.838 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.113 0.887 44 H 0.119 0.881 45 H 0.115 0.885 46 H 0.124 0.876 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.072 1.305 16.290 16.842 hybrid contribution -0.788 0.130 -0.627 1.015 sum 3.285 1.435 15.663 16.068 Atomic orbital electron populations 1.23288 0.76168 1.03693 1.02747 1.86484 1.23609 1.33342 1.84130 1.23436 0.91706 0.81528 0.72396 1.90645 1.66942 1.36088 1.44618 1.21148 0.89052 0.96117 1.07207 1.20486 1.03531 0.93071 0.94457 1.30559 1.17063 1.09668 1.15897 1.05307 0.74951 0.75264 0.75298 1.93623 1.79380 1.42077 1.77826 1.93496 1.28929 1.86874 1.86676 1.57405 1.39846 1.38162 1.46404 1.19068 0.81133 0.97482 0.88807 1.21464 0.95051 1.37553 1.02088 0.92148 1.24919 0.94790 0.95748 0.98590 1.69928 1.01263 1.47378 1.35057 0.86544 0.78483 0.80196 0.82503 1.20454 1.21228 1.19804 1.20811 0.92668 0.82979 1.01220 1.22983 1.03879 0.90649 1.01813 1.22996 0.97529 1.01583 0.98751 1.22943 0.96105 1.00493 1.02439 1.23024 1.00162 1.01504 0.93958 1.23342 0.89894 1.04373 1.02337 0.91348 0.88123 0.92079 0.86342 0.86399 0.85314 0.83752 0.94681 0.94398 0.92792 0.89673 0.89340 0.88330 0.88319 0.89245 0.89223 0.88694 0.88098 0.88456 0.87573 0.87111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.36 -5.04 10.57 -39.25 -0.41 -5.45 16 3 C 0.47 7.05 7.82 36.00 0.28 7.33 16 4 O -0.50 -8.46 14.03 -18.75 -0.26 -8.72 16 5 C -0.10 -1.28 5.55 -27.89 -0.15 -1.43 16 6 C -0.11 -1.50 1.04 -154.50 -0.16 -1.66 16 7 C -0.61 -9.35 5.81 37.16 0.22 -9.13 16 8 S 2.60 50.80 4.96 -107.50 -0.53 50.27 16 9 O -0.94 -22.01 15.74 -57.54 -0.91 -22.92 16 10 O -0.97 -19.22 16.53 -57.54 -0.95 -20.17 16 11 N -0.98 -20.41 2.70 -115.66 -0.31 -20.73 16 12 C 0.26 6.49 5.01 -5.20 -0.03 6.47 16 13 C -0.52 -14.77 9.38 -34.44 -0.32 -15.09 16 14 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 16 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 17 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 C 0.15 2.65 5.94 -4.04 -0.02 2.62 16 22 C -0.17 -2.55 6.01 -90.61 -0.54 -3.10 16 23 C -0.17 -2.35 10.18 -26.69 -0.27 -2.63 16 24 C -0.18 -2.19 10.25 -26.69 -0.27 -2.46 16 25 C -0.15 -1.55 9.94 -26.69 -0.27 -1.82 16 26 C -0.16 -1.73 9.95 -26.69 -0.27 -1.99 16 27 H 0.07 0.85 8.13 -51.93 -0.42 0.42 16 28 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 30 H 0.12 1.68 6.54 -51.93 -0.34 1.34 16 31 H 0.12 1.06 8.10 -51.93 -0.42 0.64 16 32 H 0.13 1.67 6.86 -51.93 -0.36 1.31 16 33 H 0.14 2.45 6.30 -51.92 -0.33 2.12 16 34 H 0.04 0.95 7.61 -51.93 -0.40 0.56 16 35 H 0.04 0.97 8.11 -51.93 -0.42 0.55 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.09 1.42 6.81 -51.93 -0.35 1.07 16 38 H 0.09 1.62 7.84 -51.93 -0.41 1.21 16 39 H 0.10 1.38 6.91 -51.93 -0.36 1.03 16 40 H 0.10 1.41 8.03 -51.93 -0.42 0.99 16 41 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 402.21 15.07 6.06 6.06 Total: -1.00 -34.97 402.21 -10.02 -44.98 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -7.57 Total: 5.11 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -0.84 Total: -19.78 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.42 Total: -46.41 kcal Atomic # 8 Polarization: -54.73 SS G_CDS: -2.53 Total: -57.27 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 50.80 SS G_CDS: -0.53 Total: 50.27 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.97 -10.02 -44.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175743422.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.916 kcal (2) G-P(sol) polarization free energy of solvation -34.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds