Wall clock time and date at job start Wed Apr 1 2020 03:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34227 * 116.99884 * 2 1 4 4 O 1.20829 * 120.00222 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00178 * 180.02562 * 3 2 1 6 6 C 1.52993 * 109.47630 * 181.46558 * 5 3 2 7 7 C 1.53007 * 115.55092 * 295.48972 * 6 5 3 8 8 S 1.81405 * 109.46848 * 294.35303 * 7 6 5 9 9 O 1.42103 * 110.54369 * 75.34616 * 8 7 6 10 10 O 1.42102 * 110.54187 * 298.59891 * 8 7 6 11 11 N 1.65593 * 104.44798 * 186.96969 * 8 7 6 12 12 C 1.46495 * 120.00253 * 269.72235 * 11 8 7 13 13 C 1.50700 * 109.47302 * 265.27773 * 12 11 8 14 14 H 1.07997 * 119.99877 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99893 * 179.97438 * 13 12 11 16 16 N 1.31520 * 120.00352 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00080 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47167 * 90.00041 * 17 15 13 19 19 H 1.48501 * 109.47194 * 210.00228 * 17 15 13 20 20 H 1.48505 * 109.47050 * 330.00071 * 17 15 13 21 21 C 1.46505 * 119.99917 * 90.00353 * 11 8 7 22 22 C 1.53003 * 109.46805 * 264.72313 * 21 11 8 23 23 C 1.53001 * 117.49740 * 243.74433 * 22 21 11 24 24 C 1.53005 * 117.49621 * 175.08698 * 22 21 11 25 25 C 1.53006 * 117.49969 * 81.15470 * 6 5 3 26 26 C 1.53001 * 117.50541 * 149.81437 * 6 5 3 27 27 H 1.08995 * 109.47210 * 60.00052 * 1 2 3 28 28 H 1.09002 * 109.47118 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46848 * 299.99972 * 1 2 3 30 30 H 1.09004 * 109.47442 * 61.46439 * 5 3 2 31 31 H 1.08998 * 109.47228 * 301.46786 * 5 3 2 32 32 H 1.08997 * 109.46939 * 174.35486 * 7 6 5 33 33 H 1.09002 * 109.46942 * 54.34762 * 7 6 5 34 34 H 1.09000 * 109.47003 * 25.28127 * 12 11 8 35 35 H 1.09002 * 109.47214 * 145.27392 * 12 11 8 36 36 H 0.96997 * 119.99710 * 180.02562 * 16 15 13 37 37 H 1.08998 * 109.47285 * 24.71804 * 21 11 8 38 38 H 1.08994 * 109.47397 * 144.72113 * 21 11 8 39 39 H 1.08999 * 115.54995 * 29.41666 * 22 21 11 40 40 H 1.09007 * 117.49840 * 0.02562 * 23 22 21 41 41 H 1.08996 * 117.50061 * 145.02249 * 23 22 21 42 42 H 1.09001 * 117.49699 * 214.97774 * 24 22 21 43 43 H 1.09002 * 117.49756 * 359.97438 * 24 22 21 44 44 H 1.09005 * 117.49716 * 215.00816 * 25 6 5 45 45 H 1.08995 * 117.49358 * 0.02753 * 25 6 5 46 46 H 1.09006 * 117.49405 * 359.97438 * 26 6 5 47 47 H 1.08999 * 117.50249 * 144.99670 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0002 2.7416 0.0364 7 6 3.6155 3.5747 -1.1879 8 16 4.5046 2.9567 -2.6434 9 8 3.9284 1.7409 -3.1007 10 8 5.9084 3.0782 -2.4589 11 7 4.1533 4.0494 -3.8369 12 6 2.9860 3.8438 -4.6979 13 6 3.4104 3.1367 -5.9592 14 1 4.4460 2.8671 -6.1048 15 6 2.4764 2.8332 -6.9270 16 7 1.2152 3.1611 -6.7495 17 14 3.0023 1.9560 -8.4902 18 1 2.9068 0.4877 -8.2900 19 1 2.1137 2.3620 -9.6085 20 1 4.4047 2.3212 -8.8147 21 6 5.0134 5.2186 -4.0359 22 6 4.4298 6.4152 -3.2818 23 6 3.9702 7.6166 -4.1103 24 6 5.2462 7.7092 -3.2699 25 6 4.0028 3.4435 1.3960 26 6 5.3266 3.0689 0.7251 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.9546 0.8039 -0.9037 31 1 3.9576 0.7581 0.8757 32 1 3.8811 4.6177 -1.0157 33 1 2.5417 3.4964 -1.3578 34 1 2.2488 3.2373 -4.1718 35 1 2.5476 4.8088 -4.9523 36 1 0.5581 2.9471 -7.4302 37 1 6.0127 5.0032 -3.6578 38 1 5.0697 5.4516 -5.0992 39 1 3.8575 6.1729 -2.3863 40 1 4.0832 7.5543 -5.1927 41 1 3.0959 8.1648 -3.7598 42 1 5.2108 8.3183 -2.3666 43 1 6.1993 7.7078 -3.7989 44 1 3.7304 4.4987 1.4181 45 1 3.6958 2.8601 2.2640 46 1 5.8901 2.2392 1.1523 47 1 5.9253 3.8776 0.3060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175743422.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:28 Heat of formation + Delta-G solvation = -125.192786 kcal Electronic energy + Delta-G solvation = -30165.178384 eV Core-core repulsion = 26055.532421 eV Total energy + Delta-G solvation = -4109.645962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.67379 -39.28438 -38.89966 -38.09327 -37.35326 -36.92453 -36.36154 -34.39985 -31.48407 -30.16979 -29.69474 -28.13714 -27.05463 -24.35082 -23.43028 -23.15129 -22.77993 -21.69401 -20.44174 -19.74164 -18.81608 -18.63612 -18.38450 -17.82069 -17.65952 -17.48049 -16.83565 -16.54042 -16.31822 -16.01645 -15.62366 -15.42127 -14.86430 -14.65379 -14.56608 -14.40825 -14.04927 -13.72435 -13.57604 -13.41777 -13.18812 -13.09525 -12.98591 -12.91469 -12.79256 -12.64301 -12.56131 -12.47108 -12.40000 -12.29037 -12.26440 -12.00355 -11.83364 -11.81180 -11.76120 -11.24761 -11.20926 -10.77533 -10.70476 -10.58939 -9.73433 -8.20874 -6.32369 -0.66757 1.09817 1.36147 1.39234 1.48473 1.64886 1.77851 2.39587 2.72711 2.89772 2.98508 3.09425 3.18111 3.33749 3.44440 3.57907 3.78100 3.80745 3.97926 4.02544 4.16819 4.21302 4.24900 4.27303 4.29299 4.35763 4.45095 4.51462 4.58791 4.68486 4.79530 4.84370 4.90264 4.92724 4.93975 5.04180 5.09692 5.18818 5.24047 5.31209 5.33898 5.34267 5.47219 5.68787 5.91872 6.10833 6.65383 6.75290 7.35724 8.86857 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008604 B = 0.005030 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3253.354195 B = 5565.245913 C = 7539.248380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.367 6.367 3 C 0.460 3.540 4 O -0.523 6.523 5 C -0.102 4.102 6 C -0.152 4.152 7 C -0.574 4.574 8 S 2.596 3.404 9 O -0.990 6.990 10 O -0.977 6.977 11 N -0.991 5.991 12 C 0.276 3.724 13 C -0.542 4.542 14 H 0.050 0.950 15 C 0.011 3.989 16 N -0.926 5.926 17 Si 0.955 3.045 18 H -0.278 1.278 19 H -0.273 1.273 20 H -0.265 1.265 21 C 0.146 3.854 22 C -0.192 4.192 23 C -0.183 4.183 24 C -0.151 4.151 25 C -0.127 4.127 26 C -0.151 4.151 27 H 0.048 0.952 28 H 0.133 0.867 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.162 0.838 32 H 0.157 0.843 33 H 0.128 0.872 34 H 0.008 0.992 35 H 0.027 0.973 36 H 0.267 0.733 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.116 0.884 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.118 0.882 46 H 0.131 0.869 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.205 2.462 18.641 19.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C 0.304 3.696 4 O -0.412 6.412 5 C -0.139 4.139 6 C -0.154 4.154 7 C -0.705 4.705 8 S 2.693 3.307 9 O -0.981 6.981 10 O -0.967 6.967 11 N -0.828 5.828 12 C 0.153 3.847 13 C -0.581 4.581 14 H 0.068 0.932 15 C -0.188 4.188 16 N -0.566 5.566 17 Si 0.780 3.220 18 H -0.204 1.204 19 H -0.198 1.198 20 H -0.189 1.189 21 C 0.020 3.980 22 C -0.212 4.212 23 C -0.221 4.221 24 C -0.188 4.188 25 C -0.166 4.166 26 C -0.188 4.188 27 H 0.067 0.933 28 H 0.151 0.849 29 H 0.092 0.908 30 H 0.118 0.882 31 H 0.179 0.821 32 H 0.175 0.825 33 H 0.146 0.854 34 H 0.026 0.974 35 H 0.045 0.955 36 H 0.076 0.924 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.124 0.876 40 H 0.103 0.897 41 H 0.117 0.883 42 H 0.134 0.866 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.136 0.864 46 H 0.149 0.851 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.343 1.979 18.385 19.248 hybrid contribution -1.184 -0.083 -1.195 1.684 sum 4.159 1.896 17.190 17.787 Atomic orbital electron populations 1.23554 0.74894 1.05781 1.02406 1.86482 1.25022 1.33028 1.83787 1.23973 0.92677 0.81376 0.71583 1.90618 1.67705 1.36863 1.46024 1.21317 0.87607 0.96685 1.08271 1.20647 1.06869 0.93092 0.94838 1.30172 1.14733 1.11523 1.14058 1.05238 0.74931 0.74322 0.76175 1.93556 1.80029 1.44888 1.79593 1.93468 1.29494 1.86761 1.87002 1.57284 1.38912 1.39354 1.47204 1.18521 0.82114 0.95845 0.88266 1.21779 0.94684 1.38026 1.03621 0.93185 1.25751 0.94851 0.96426 1.01806 1.70024 1.02154 1.48214 1.36207 0.85604 0.78697 0.78777 0.78954 1.20413 1.19753 1.18932 1.20939 0.92856 0.83264 1.00938 1.22875 1.05888 0.90320 1.02133 1.23046 0.99387 1.01348 0.98272 1.23072 0.95430 0.97663 1.02660 1.23172 0.99218 1.01818 0.92344 1.23548 0.89369 1.05057 1.00831 0.93311 0.84911 0.90815 0.88188 0.82070 0.82534 0.85381 0.97392 0.95483 0.92448 0.88800 0.91051 0.87555 0.89653 0.88296 0.86566 0.87766 0.87446 0.86371 0.85069 0.87044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.79 16 2 O -0.37 -10.22 10.57 -51.39 -0.54 -10.77 16 3 C 0.46 13.79 7.82 71.23 0.56 14.35 16 4 O -0.52 -17.92 14.03 21.96 0.31 -17.61 16 5 C -0.10 -2.53 5.55 29.84 0.17 -2.37 16 6 C -0.15 -3.72 1.04 -52.18 -0.05 -3.77 16 7 C -0.57 -17.39 5.81 71.98 0.42 -16.97 16 8 S 2.60 103.98 4.96 -56.49 -0.28 103.70 16 9 O -0.99 -48.97 15.74 -127.65 -2.01 -50.98 16 10 O -0.98 -38.73 16.53 -127.65 -2.11 -40.84 16 11 N -0.99 -42.86 2.70 -519.85 -1.40 -44.26 16 12 C 0.28 14.73 5.01 85.63 0.43 15.16 16 13 C -0.54 -31.95 9.38 25.60 0.24 -31.71 16 14 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 15 C 0.01 0.63 5.46 84.65 0.46 1.09 16 16 N -0.93 -56.14 13.29 21.45 0.28 -55.86 16 17 Si 0.96 46.01 29.54 68.60 2.03 48.04 16 18 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 21 C 0.15 5.23 5.94 86.38 0.51 5.74 16 22 C -0.19 -5.50 6.01 -10.79 -0.06 -5.57 16 23 C -0.18 -4.90 10.18 30.62 0.31 -4.59 16 24 C -0.15 -3.24 10.25 30.62 0.31 -2.93 16 25 C -0.13 -2.18 9.94 30.62 0.30 -1.87 16 26 C -0.15 -2.67 9.95 30.62 0.30 -2.37 16 27 H 0.05 1.26 8.13 -2.39 -0.02 1.24 16 28 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.07 1.43 8.13 -2.38 -0.02 1.41 16 30 H 0.10 2.89 6.54 -2.39 -0.02 2.87 16 31 H 0.16 2.43 8.10 -2.39 -0.02 2.41 16 32 H 0.16 3.77 6.86 -2.39 -0.02 3.75 16 33 H 0.13 4.45 6.30 -2.39 -0.02 4.43 16 34 H 0.01 0.47 7.61 -2.39 -0.02 0.45 16 35 H 0.03 1.47 8.11 -2.39 -0.02 1.45 16 36 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 37 H 0.09 3.13 6.81 -2.39 -0.02 3.12 16 38 H 0.07 2.74 7.84 -2.39 -0.02 2.72 16 39 H 0.11 2.84 6.91 -2.39 -0.02 2.83 16 40 H 0.08 2.48 8.03 -2.38 -0.02 2.46 16 41 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.12 1.93 8.14 -2.39 -0.02 1.92 16 43 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 45 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.13 1.66 8.14 -2.38 -0.02 1.64 16 47 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -79.21 402.21 2.33 -76.89 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.96 Total: 25.72 kcal Atomic # 6 Polarization: -39.11 SS G_CDS: 5.10 Total: -34.01 kcal Atomic # 7 Polarization: -99.00 SS G_CDS: -1.12 Total: -100.12 kcal Atomic # 8 Polarization: -115.84 SS G_CDS: -4.35 Total: -120.20 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Atomic # 16 Polarization: 103.98 SS G_CDS: -0.28 Total: 103.70 kcal Total: -79.21 2.33 -76.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175743422.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.308 kcal (2) G-P(sol) polarization free energy of solvation -79.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds