Wall clock time and date at job start Wed Apr 1 2020 03:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35957 * 117.00123 * 2 1 4 4 C 1.38072 * 119.99945 * 359.97438 * 3 2 1 5 5 C 1.39985 * 119.83747 * 180.02562 * 4 3 2 6 6 C 1.46960 * 120.07887 * 180.02562 * 5 4 3 7 7 C 1.35024 * 120.00375 * 226.50584 * 6 5 4 8 8 C 1.46256 * 119.99578 * 10.75336 * 7 6 5 9 9 O 1.21722 * 120.00142 * 7.00368 * 8 7 6 10 10 N 1.34783 * 119.99947 * 187.00721 * 8 7 6 11 11 C 1.46493 * 119.99739 * 179.97438 * 10 8 7 12 12 C 1.50710 * 109.46820 * 179.97438 * 11 10 8 13 13 O 1.20760 * 119.99741 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00232 * 180.02562 * 12 11 10 15 15 C 1.52998 * 117.49924 * 223.62685 * 14 12 11 16 16 C 1.52993 * 117.50118 * 155.00125 * 14 12 11 17 17 C 1.40024 * 119.84257 * 0.02562 * 5 4 3 18 18 C 1.37653 * 120.00389 * 0.02562 * 17 5 4 19 19 C 1.39057 * 120.15625 * 359.97438 * 18 17 5 20 20 O 1.35617 * 119.91820 * 180.02562 * 19 18 17 21 21 C 1.34753 * 117.00227 * 354.18296 * 20 19 18 22 22 H 1.08005 * 120.00200 * 5.07582 * 21 20 19 23 23 C 1.38706 * 120.00135 * 185.07047 * 21 20 19 24 24 N 1.31515 * 120.00014 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00004 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47454 * 89.99870 * 25 23 21 27 27 H 1.48496 * 109.47051 * 210.00032 * 25 23 21 28 28 H 1.48507 * 109.46936 * 329.99990 * 25 23 21 29 29 H 1.09000 * 109.46772 * 300.00333 * 1 2 3 30 30 H 1.08996 * 109.46961 * 60.00156 * 1 2 3 31 31 H 1.08992 * 109.47222 * 179.97438 * 1 2 3 32 32 H 1.07994 * 120.08558 * 0.02562 * 4 3 2 33 33 H 1.08004 * 120.00032 * 46.50716 * 6 5 4 34 34 H 1.07999 * 120.00367 * 190.75207 * 7 6 5 35 35 H 0.96995 * 119.99387 * 0.02562 * 10 8 7 36 36 H 1.08996 * 109.47410 * 299.99578 * 11 10 8 37 37 H 1.09000 * 109.47284 * 60.00241 * 11 10 8 38 38 H 1.08999 * 115.54455 * 9.32917 * 14 12 11 39 39 H 1.08994 * 117.50082 * 359.97438 * 15 14 12 40 40 H 1.08994 * 117.49987 * 145.02026 * 15 14 12 41 41 H 1.09002 * 117.49773 * 214.98471 * 16 14 12 42 42 H 1.09007 * 117.49571 * 359.97438 * 16 14 12 43 43 H 1.08004 * 120.00349 * 180.29721 * 17 5 4 44 44 H 1.07995 * 119.92224 * 180.02562 * 18 17 5 45 45 H 0.97007 * 119.99858 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2942 2.3693 -0.0005 5 6 1.9333 3.6148 -0.0011 6 6 1.1381 4.8507 -0.0011 7 6 1.4493 5.8538 -0.8497 8 6 2.4167 5.6295 -1.9235 9 8 2.8451 4.5096 -2.1326 10 7 2.8338 6.6631 -2.6814 11 6 3.8032 6.4385 -3.7565 12 6 4.1001 7.7452 -4.4461 13 8 3.5583 8.7594 -4.0772 14 6 5.0733 7.7863 -5.5961 15 6 6.0886 8.9306 -5.6219 16 6 4.9208 8.9215 -6.6104 17 6 3.3320 3.6803 -0.0016 18 6 4.0753 2.5217 -0.0021 19 6 3.4405 1.2844 -0.0016 20 8 4.1776 0.1461 -0.0016 21 6 5.5127 0.2816 -0.1238 22 1 5.9570 1.2660 -0.1335 23 6 6.3166 -0.8431 -0.2370 24 7 5.7757 -2.0418 -0.2256 25 14 8.1674 -0.6551 -0.4058 26 1 8.7896 -0.6514 0.9426 27 1 8.7098 -1.7879 -1.1981 28 1 8.4742 0.6235 -1.0960 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2157 2.3145 -0.0005 33 1 0.3048 4.9567 0.6778 34 1 0.9838 6.8216 -0.7356 35 1 2.4927 7.5556 -2.5144 36 1 4.7232 6.0314 -3.3371 37 1 3.3894 5.7334 -4.4775 38 1 5.3983 6.8161 -5.9717 39 1 6.0524 9.6539 -4.8073 40 1 7.0819 8.7133 -6.0144 41 1 5.1458 8.6982 -7.6533 42 1 4.1163 9.6385 -6.4461 43 1 3.8278 4.6398 0.0028 44 1 5.1540 2.5737 -0.0021 45 1 6.3379 -2.8283 -0.3052 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255356526.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:19 Heat of formation + Delta-G solvation = -45.989606 kcal Electronic energy + Delta-G solvation = -29194.583637 eV Core-core repulsion = 24952.928231 eV Total energy + Delta-G solvation = -4241.655406 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.52799 -39.69429 -39.02083 -37.43130 -36.63235 -36.15042 -34.29493 -32.94262 -32.09586 -29.56021 -29.36714 -28.21822 -26.39283 -25.34680 -24.47288 -22.89492 -22.68920 -21.46392 -20.95685 -20.06811 -19.19404 -17.96492 -17.88127 -16.93083 -16.54290 -16.26375 -15.99920 -15.73294 -15.16852 -15.04252 -14.94294 -14.65370 -14.44438 -14.23904 -13.77861 -13.68468 -13.39658 -13.36420 -13.25546 -12.93536 -12.67812 -12.53733 -12.21261 -11.99873 -11.66102 -11.42127 -11.34098 -11.13201 -11.01741 -10.98426 -10.91613 -10.61887 -10.47163 -10.31071 -10.08565 -9.52646 -9.31435 -9.15305 -9.05849 -8.66191 -7.71289 -6.63775 -6.40747 -3.93495 1.22270 1.39429 2.34547 2.65204 3.03216 3.15554 3.16690 3.21407 3.38309 3.60072 3.64939 3.99404 4.13399 4.29010 4.44560 4.58379 4.64254 4.79833 5.06053 5.09836 5.16016 5.18405 5.21234 5.25318 5.32513 5.37518 5.51873 5.55341 5.61252 5.63631 5.64240 5.76500 5.85837 5.92957 6.23191 6.31650 6.38427 6.46518 6.57670 6.73300 7.04352 7.05007 7.18085 7.30953 7.46333 7.62659 7.72715 8.00984 8.29698 8.49177 9.03522 9.76491 10.76419 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008518 B = 0.002983 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3286.233146 B = 9383.448973 C =12011.025981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.305 6.305 3 C 0.041 3.959 4 C -0.136 4.136 5 C -0.155 4.155 6 C 0.024 3.976 7 C -0.258 4.258 8 C 0.540 3.460 9 O -0.508 6.508 10 N -0.733 5.733 11 C 0.077 3.923 12 C 0.383 3.617 13 O -0.456 6.456 14 C -0.222 4.222 15 C -0.147 4.147 16 C -0.150 4.150 17 C -0.014 4.014 18 C -0.220 4.220 19 C 0.151 3.849 20 O -0.159 6.159 21 C -0.388 4.388 22 H 0.093 0.907 23 C 0.039 3.961 24 N -0.855 5.855 25 Si 0.941 3.059 26 H -0.273 1.273 27 H -0.277 1.277 28 H -0.267 1.267 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.404 0.596 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.131 0.869 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.099 0.901 44 H 0.131 0.869 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.170 19.390 -7.299 21.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.219 6.219 3 C -0.004 4.004 4 C -0.155 4.155 5 C -0.156 4.156 6 C 0.005 3.995 7 C -0.279 4.279 8 C 0.330 3.670 9 O -0.384 6.384 10 N -0.389 5.389 11 C -0.048 4.048 12 C 0.260 3.740 13 O -0.330 6.330 14 C -0.242 4.242 15 C -0.184 4.184 16 C -0.187 4.187 17 C -0.033 4.033 18 C -0.240 4.240 19 C 0.096 3.904 20 O -0.061 6.061 21 C -0.464 4.464 22 H 0.110 0.890 23 C -0.166 4.166 24 N -0.489 5.489 25 Si 0.765 3.235 26 H -0.199 1.199 27 H -0.202 1.202 28 H -0.191 1.191 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.240 0.760 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.149 0.851 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.117 0.883 44 H 0.149 0.851 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.020 18.401 -7.262 20.409 hybrid contribution 0.536 0.682 -0.187 0.888 sum -4.484 19.083 -7.449 20.971 Atomic orbital electron populations 1.22848 0.80684 1.02713 1.00092 1.86223 1.19140 1.26484 1.90061 1.17931 0.89352 0.84342 1.08740 1.20648 0.97975 0.90922 1.05994 1.18023 0.92858 0.91227 1.13464 1.22307 0.93588 0.91354 0.92278 1.22602 1.05269 1.00553 0.99440 1.18504 0.81646 0.84273 0.82600 1.91025 1.55881 1.22119 1.69356 1.45792 1.46158 1.12174 1.34825 1.21519 0.95574 0.96195 0.91536 1.23941 0.78535 0.89561 0.81986 1.90368 1.44927 1.36746 1.60944 1.22769 1.03391 0.97572 1.00444 1.22965 0.94636 0.98335 1.02480 1.22978 1.01222 0.98930 0.95612 1.20479 0.91924 0.96505 0.94396 1.20714 1.00269 0.90866 1.12139 1.18795 0.88231 0.87577 0.95800 1.83989 1.19476 1.25675 1.76956 1.21413 0.78709 0.94765 1.51509 0.88956 1.25319 1.00448 0.94228 0.96583 1.70055 1.36159 0.97628 1.45014 0.85715 0.80620 0.78449 0.78667 1.19856 1.20237 1.19129 0.93741 0.93754 0.89250 0.86541 0.85907 0.85949 0.76003 0.87681 0.87875 0.85082 0.88006 0.87473 0.87630 0.87791 0.88306 0.85132 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.81 101.05 0.99 1.51 16 2 O -0.30 -6.99 10.28 -34.21 -0.35 -7.34 16 3 C 0.04 0.96 6.70 -39.12 -0.26 0.69 16 4 C -0.14 -2.64 8.77 -38.99 -0.34 -2.99 16 5 C -0.15 -2.86 4.42 -105.04 -0.46 -3.32 16 6 C 0.02 0.34 9.78 -37.19 -0.36 -0.02 16 7 C -0.26 -3.31 9.92 -37.50 -0.37 -3.68 16 8 C 0.54 8.07 6.88 -13.04 -0.09 7.98 16 9 O -0.51 -9.79 12.34 5.17 0.06 -9.73 16 10 N -0.73 -8.74 5.52 -62.94 -0.35 -9.08 16 11 C 0.08 0.80 6.09 -5.19 -0.03 0.77 16 12 C 0.38 3.58 6.99 -29.03 -0.20 3.38 16 13 O -0.46 -5.23 15.74 6.00 0.09 -5.14 16 14 C -0.22 -1.59 6.13 -91.78 -0.56 -2.15 16 15 C -0.15 -0.93 10.14 -26.73 -0.27 -1.21 16 16 C -0.15 -0.95 10.05 -26.73 -0.27 -1.22 16 17 C -0.01 -0.29 6.67 -39.13 -0.26 -0.55 16 18 C -0.22 -5.13 9.14 -39.49 -0.36 -5.49 16 19 C 0.15 3.93 6.67 -38.76 -0.26 3.68 16 20 O -0.16 -4.78 9.52 -13.93 -0.13 -4.91 16 21 C -0.39 -11.19 9.48 30.91 0.29 -10.89 16 22 H 0.09 2.46 5.19 -52.48 -0.27 2.19 16 23 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 24 N -0.85 -25.68 13.67 55.48 0.76 -24.92 16 25 Si 0.94 20.83 29.55 -169.99 -5.02 15.81 16 26 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 27 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 28 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 29 H 0.04 0.61 7.66 -51.93 -0.40 0.22 16 30 H 0.04 0.64 7.66 -51.93 -0.40 0.24 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.12 1.88 6.28 -52.49 -0.33 1.55 16 33 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 34 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 35 H 0.40 4.22 7.42 -40.82 -0.30 3.92 16 36 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.13 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.75 7.89 -51.93 -0.41 0.34 16 43 H 0.10 1.82 7.29 -52.48 -0.38 1.44 16 44 H 0.13 3.01 5.62 -52.49 -0.29 2.71 16 45 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 387.49 15.07 5.84 5.84 Total: -1.00 -36.35 387.49 -7.75 -44.10 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -5.73 Total: 7.89 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -2.92 Total: -12.51 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.41 Total: -34.01 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.33 Total: -27.12 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.35 -7.75 -44.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255356526.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.893 kcal (2) G-P(sol) polarization free energy of solvation -36.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds