Wall clock time and date at job start Wed Apr 1 2020 03:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35957 * 117.00123 * 2 1 4 4 C 1.38072 * 119.99945 * 359.97438 * 3 2 1 5 5 C 1.39985 * 119.83747 * 180.02562 * 4 3 2 6 6 C 1.46960 * 120.07887 * 180.02562 * 5 4 3 7 7 C 1.35024 * 120.00375 * 226.50584 * 6 5 4 8 8 C 1.46256 * 119.99578 * 10.75336 * 7 6 5 9 9 O 1.21722 * 120.00142 * 7.00368 * 8 7 6 10 10 N 1.34783 * 119.99947 * 187.00721 * 8 7 6 11 11 C 1.46493 * 119.99739 * 179.97438 * 10 8 7 12 12 C 1.50710 * 109.46820 * 179.97438 * 11 10 8 13 13 O 1.20760 * 119.99741 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00232 * 180.02562 * 12 11 10 15 15 C 1.52998 * 117.49924 * 223.62685 * 14 12 11 16 16 C 1.52993 * 117.50118 * 155.00125 * 14 12 11 17 17 C 1.40024 * 119.84257 * 0.02562 * 5 4 3 18 18 C 1.37653 * 120.00389 * 0.02562 * 17 5 4 19 19 C 1.39057 * 120.15625 * 359.97438 * 18 17 5 20 20 O 1.35617 * 119.91820 * 180.02562 * 19 18 17 21 21 C 1.34753 * 117.00227 * 354.18296 * 20 19 18 22 22 H 1.08005 * 120.00200 * 5.07582 * 21 20 19 23 23 C 1.38706 * 120.00135 * 185.07047 * 21 20 19 24 24 N 1.31515 * 120.00014 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00004 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47454 * 89.99870 * 25 23 21 27 27 H 1.48496 * 109.47051 * 210.00032 * 25 23 21 28 28 H 1.48507 * 109.46936 * 329.99990 * 25 23 21 29 29 H 1.09000 * 109.46772 * 300.00333 * 1 2 3 30 30 H 1.08996 * 109.46961 * 60.00156 * 1 2 3 31 31 H 1.08992 * 109.47222 * 179.97438 * 1 2 3 32 32 H 1.07994 * 120.08558 * 0.02562 * 4 3 2 33 33 H 1.08004 * 120.00032 * 46.50716 * 6 5 4 34 34 H 1.07999 * 120.00367 * 190.75207 * 7 6 5 35 35 H 0.96995 * 119.99387 * 0.02562 * 10 8 7 36 36 H 1.08996 * 109.47410 * 299.99578 * 11 10 8 37 37 H 1.09000 * 109.47284 * 60.00241 * 11 10 8 38 38 H 1.08999 * 115.54455 * 9.32917 * 14 12 11 39 39 H 1.08994 * 117.50082 * 359.97438 * 15 14 12 40 40 H 1.08994 * 117.49987 * 145.02026 * 15 14 12 41 41 H 1.09002 * 117.49773 * 214.98471 * 16 14 12 42 42 H 1.09007 * 117.49571 * 359.97438 * 16 14 12 43 43 H 1.08004 * 120.00349 * 180.29721 * 17 5 4 44 44 H 1.07995 * 119.92224 * 180.02562 * 18 17 5 45 45 H 0.97007 * 119.99858 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2942 2.3693 -0.0005 5 6 1.9333 3.6148 -0.0011 6 6 1.1381 4.8507 -0.0011 7 6 1.4493 5.8538 -0.8497 8 6 2.4167 5.6295 -1.9235 9 8 2.8451 4.5096 -2.1326 10 7 2.8338 6.6631 -2.6814 11 6 3.8032 6.4385 -3.7565 12 6 4.1001 7.7452 -4.4461 13 8 3.5583 8.7594 -4.0772 14 6 5.0733 7.7863 -5.5961 15 6 6.0886 8.9306 -5.6219 16 6 4.9208 8.9215 -6.6104 17 6 3.3320 3.6803 -0.0016 18 6 4.0753 2.5217 -0.0021 19 6 3.4405 1.2844 -0.0016 20 8 4.1776 0.1461 -0.0016 21 6 5.5127 0.2816 -0.1238 22 1 5.9570 1.2660 -0.1335 23 6 6.3166 -0.8431 -0.2370 24 7 5.7757 -2.0418 -0.2256 25 14 8.1674 -0.6551 -0.4058 26 1 8.7896 -0.6514 0.9426 27 1 8.7098 -1.7879 -1.1981 28 1 8.4742 0.6235 -1.0960 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2157 2.3145 -0.0005 33 1 0.3048 4.9567 0.6778 34 1 0.9838 6.8216 -0.7356 35 1 2.4927 7.5556 -2.5144 36 1 4.7232 6.0314 -3.3371 37 1 3.3894 5.7334 -4.4775 38 1 5.3983 6.8161 -5.9717 39 1 6.0524 9.6539 -4.8073 40 1 7.0819 8.7133 -6.0144 41 1 5.1458 8.6982 -7.6533 42 1 4.1163 9.6385 -6.4461 43 1 3.8278 4.6398 0.0028 44 1 5.1540 2.5737 -0.0021 45 1 6.3379 -2.8283 -0.3052 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255356526.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:18 Heat of formation + Delta-G solvation = -71.328891 kcal Electronic energy + Delta-G solvation = -29195.682431 eV Core-core repulsion = 24952.928231 eV Total energy + Delta-G solvation = -4242.754200 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.49234 -41.15230 -40.30816 -39.21481 -37.81078 -37.15446 -35.43348 -34.52920 -33.86683 -31.12132 -30.63655 -29.53040 -27.78895 -27.29603 -25.45404 -23.90150 -23.37151 -23.18186 -22.30355 -21.03387 -20.18213 -19.85361 -19.36640 -18.26160 -17.71725 -17.36277 -17.14580 -16.79740 -16.71183 -16.59295 -16.30637 -15.76066 -15.65231 -15.50441 -15.20381 -15.15210 -15.03085 -14.66895 -14.52501 -13.95672 -13.90626 -13.59490 -13.56651 -13.47241 -13.03304 -12.80505 -12.69077 -12.54887 -12.47458 -12.16567 -12.01998 -11.81811 -11.64464 -11.52936 -11.33813 -10.93560 -10.84073 -10.67480 -10.30640 -10.14043 -9.35634 -8.44804 -8.36053 -6.08310 -0.04169 0.65064 0.66038 1.07075 1.33552 1.45099 1.52417 2.11461 2.18844 2.42303 2.63258 2.83604 2.86355 2.87070 3.17723 3.48082 3.73392 3.87625 3.93605 3.97781 4.06597 4.13313 4.20920 4.26359 4.34417 4.35650 4.44868 4.44976 4.57982 4.62632 4.70153 4.71949 4.77390 4.90828 4.99523 5.01185 5.11039 5.14813 5.16462 5.36136 5.36411 5.52444 5.59258 5.81153 5.98594 6.08347 6.28575 6.58737 6.70214 6.99361 7.35279 7.83767 8.79262 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008518 B = 0.002983 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3286.233146 B = 9383.448973 C =12011.025981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.347 6.347 3 C 0.028 3.972 4 C -0.136 4.136 5 C -0.120 4.120 6 C 0.005 3.995 7 C -0.225 4.225 8 C 0.529 3.471 9 O -0.559 6.559 10 N -0.719 5.719 11 C 0.071 3.929 12 C 0.392 3.608 13 O -0.478 6.478 14 C -0.232 4.232 15 C -0.144 4.144 16 C -0.146 4.146 17 C -0.025 4.025 18 C -0.221 4.221 19 C 0.095 3.905 20 O -0.220 6.220 21 C -0.414 4.414 22 H 0.098 0.902 23 C -0.024 4.024 24 N -0.919 5.919 25 Si 1.020 2.980 26 H -0.261 1.261 27 H -0.269 1.269 28 H -0.254 1.254 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.107 0.893 32 H 0.158 0.842 33 H 0.173 0.827 34 H 0.172 0.828 35 H 0.414 0.586 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.146 0.854 39 H 0.092 0.908 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.094 0.906 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.736 23.594 -7.916 25.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.263 6.263 3 C -0.016 4.016 4 C -0.154 4.154 5 C -0.121 4.121 6 C -0.014 4.014 7 C -0.246 4.246 8 C 0.319 3.681 9 O -0.439 6.439 10 N -0.375 5.375 11 C -0.053 4.053 12 C 0.271 3.729 13 O -0.354 6.354 14 C -0.251 4.251 15 C -0.181 4.181 16 C -0.183 4.183 17 C -0.043 4.043 18 C -0.241 4.241 19 C 0.044 3.956 20 O -0.127 6.127 21 C -0.490 4.490 22 H 0.116 0.884 23 C -0.222 4.222 24 N -0.557 5.557 25 Si 0.839 3.161 26 H -0.185 1.185 27 H -0.194 1.194 28 H -0.177 1.177 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.126 0.874 32 H 0.176 0.824 33 H 0.190 0.810 34 H 0.189 0.811 35 H 0.252 0.748 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.164 0.836 39 H 0.111 0.889 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.112 0.888 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.641 22.714 -7.887 24.945 hybrid contribution 0.634 -0.149 -0.089 0.658 sum -6.007 22.565 -7.976 24.676 Atomic orbital electron populations 1.23235 0.77260 1.04771 1.01966 1.86167 1.22880 1.27048 1.90194 1.18309 0.88918 0.85872 1.08518 1.21117 0.99829 0.89789 1.04683 1.18652 0.92690 0.93248 1.07468 1.22569 0.94970 0.89054 0.94816 1.23051 1.02584 1.01874 0.97062 1.19072 0.81770 0.83962 0.83276 1.91036 1.57902 1.24180 1.70761 1.45717 1.45441 1.12073 1.34219 1.21641 0.95172 0.97188 0.91335 1.24003 0.78382 0.88460 0.82103 1.90363 1.46037 1.37186 1.61829 1.22816 1.03436 0.98819 1.00027 1.23063 0.95462 0.97354 1.02233 1.23065 1.00821 0.97891 0.96500 1.20675 0.93021 0.95899 0.94749 1.20805 1.00121 0.91418 1.11710 1.19443 0.89768 0.87719 0.98670 1.83956 1.19931 1.27709 1.81059 1.21858 0.79274 0.95484 1.52348 0.88426 1.26644 1.06102 0.93482 0.95930 1.70211 1.38328 0.98671 1.48497 0.84582 0.73289 0.78975 0.79262 1.18533 1.19360 1.17738 0.91238 0.92104 0.87439 0.82427 0.80994 0.81111 0.74787 0.88008 0.87753 0.83587 0.88903 0.85636 0.85667 0.88799 0.86499 0.86337 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 9.81 113.37 1.11 1.79 16 2 O -0.35 -16.55 10.28 -79.10 -0.81 -17.36 16 3 C 0.03 1.37 6.70 22.57 0.15 1.52 16 4 C -0.14 -5.01 8.77 22.65 0.20 -4.81 16 5 C -0.12 -4.11 4.42 -20.14 -0.09 -4.20 16 6 C 0.01 0.11 9.78 23.82 0.23 0.35 16 7 C -0.23 -4.52 9.92 23.62 0.23 -4.28 16 8 C 0.53 14.15 6.88 86.33 0.59 14.74 16 9 O -0.56 -20.79 12.34 -4.42 -0.05 -20.85 16 10 N -0.72 -15.13 5.52 -471.23 -2.60 -17.73 16 11 C 0.07 1.39 6.09 85.64 0.52 1.91 16 12 C 0.39 6.66 6.99 29.11 0.20 6.86 16 13 O -0.48 -10.10 15.74 -1.45 -0.02 -10.12 16 14 C -0.23 -2.85 6.13 -11.54 -0.07 -2.92 16 15 C -0.14 -1.53 10.14 30.59 0.31 -1.22 16 16 C -0.15 -1.53 10.05 30.59 0.31 -1.22 16 17 C -0.02 -0.99 6.67 22.56 0.15 -0.84 16 18 C -0.22 -10.82 9.14 22.33 0.20 -10.62 16 19 C 0.09 5.28 6.67 22.80 0.15 5.43 16 20 O -0.22 -14.47 9.52 -6.52 -0.06 -14.53 16 21 C -0.41 -25.82 9.48 67.93 0.64 -25.17 16 22 H 0.10 5.64 5.19 -2.91 -0.02 5.62 16 23 C -0.02 -1.46 5.49 84.85 0.47 -0.99 16 24 N -0.92 -59.46 13.67 21.62 0.30 -59.16 16 25 Si 1.02 44.96 29.55 68.60 2.03 46.98 16 26 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 28 H -0.25 -10.41 7.11 99.48 0.71 -9.71 16 29 H 0.07 1.75 7.66 -2.39 -0.02 1.73 16 30 H 0.06 1.63 7.66 -2.39 -0.02 1.62 16 31 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.16 4.42 6.28 -2.91 -0.02 4.41 16 33 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 34 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 35 H 0.41 7.18 7.42 -92.71 -0.69 6.49 16 36 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.15 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 40 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.09 1.20 7.89 -2.38 -0.02 1.18 16 43 H 0.12 4.14 7.29 -2.91 -0.02 4.12 16 44 H 0.12 5.89 5.62 -2.91 -0.02 5.87 16 45 H 0.27 16.03 8.31 -92.70 -0.77 15.25 16 Total: -1.00 -89.72 387.49 4.44 -85.28 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: 0.35 Total: 31.17 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: 5.32 Total: -23.68 kcal Atomic # 7 Polarization: -74.59 SS G_CDS: -2.31 Total: -76.90 kcal Atomic # 8 Polarization: -61.91 SS G_CDS: -0.95 Total: -62.86 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -89.72 4.44 -85.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255356526.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.950 kcal (2) G-P(sol) polarization free energy of solvation -89.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds