Wall clock time and date at job start Wed Apr 1 2020 03:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 117.00336 * 2 1 4 4 O 1.20825 * 119.99249 * 0.02562 * 3 2 1 5 5 C 1.50690 * 120.00259 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.87358 * 40.43975 * 5 3 2 7 7 C 1.54422 * 110.00847 * 279.35062 * 5 3 2 8 8 C 1.55157 * 102.89513 * 218.32107 * 7 5 3 9 9 C 1.54905 * 101.61889 * 35.49779 * 8 7 5 10 10 N 1.47023 * 109.88221 * 161.45526 * 5 3 2 11 11 C 1.34784 * 125.64769 * 298.47499 * 10 5 3 12 12 O 1.21726 * 119.99808 * 0.02562 * 11 10 5 13 13 C 1.46250 * 120.00089 * 180.02562 * 11 10 5 14 14 C 1.35018 * 119.99900 * 173.20740 * 13 11 10 15 15 C 1.46961 * 120.00294 * 348.68352 * 14 13 11 16 16 C 1.40022 * 120.09535 * 316.40245 * 15 14 13 17 17 C 1.37598 * 119.89426 * 179.69368 * 16 15 14 18 18 C 1.39175 * 120.10076 * 0.60756 * 17 16 15 19 19 O 1.35572 * 119.89924 * 179.69721 * 18 17 16 20 20 C 1.34788 * 117.00206 * 174.33615 * 19 18 17 21 21 H 1.08003 * 119.99757 * 5.05705 * 20 19 18 22 22 C 1.38718 * 120.00235 * 185.05885 * 20 19 18 23 23 N 1.31501 * 119.99793 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99785 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47383 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47109 * 120.00124 * 24 22 20 27 27 H 1.48501 * 109.46913 * 239.99927 * 24 22 20 28 28 C 1.39180 * 120.20479 * 359.67112 * 18 17 16 29 29 C 1.37600 * 120.09588 * 0.02562 * 28 18 17 30 30 H 1.08999 * 109.47081 * 299.99734 * 1 2 3 31 31 H 1.08993 * 109.46955 * 60.00049 * 1 2 3 32 32 H 1.09007 * 109.46886 * 180.02562 * 1 2 3 33 33 H 1.08998 * 110.76305 * 99.96858 * 7 5 3 34 34 H 1.08996 * 110.72619 * 336.65594 * 7 5 3 35 35 H 1.08998 * 111.00733 * 277.40325 * 8 7 5 36 36 H 1.09000 * 111.00827 * 153.59314 * 8 7 5 37 37 H 1.09000 * 110.36868 * 81.80669 * 9 8 7 38 38 H 1.08992 * 110.37320 * 204.13549 * 9 8 7 39 39 H 1.08004 * 119.99618 * 353.20182 * 13 11 10 40 40 H 1.08005 * 119.99533 * 168.68425 * 14 13 11 41 41 H 1.07996 * 120.05771 * 0.02562 * 16 15 14 42 42 H 1.08004 * 119.95188 * 180.32269 * 17 16 15 43 43 H 0.97003 * 119.99999 * 179.97438 * 23 22 20 44 44 H 1.07997 * 119.94865 * 180.02562 * 28 18 17 45 45 H 1.07998 * 120.04520 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9769 0.5152 -0.6658 7 6 4.1069 1.0667 1.4309 8 6 5.2896 2.0684 1.5034 9 6 4.7527 3.2470 0.6536 10 7 3.9969 2.6101 -0.4402 11 6 3.7434 3.1603 -1.6442 12 8 3.1063 2.5395 -2.4751 13 6 4.2336 4.5034 -1.9523 14 6 4.1002 5.0009 -3.2003 15 6 3.6959 4.1186 -4.3039 16 6 4.2656 2.8457 -4.4300 17 6 3.8794 2.0206 -5.4611 18 6 2.9332 2.4542 -6.3851 19 8 2.5602 1.6402 -7.4031 20 6 1.5572 2.0701 -8.1943 21 1 1.1447 3.0583 -8.0543 22 6 1.0548 1.2432 -9.1884 23 7 1.5575 0.0401 -9.3591 24 14 -0.3356 1.8388 -10.2844 25 1 -0.7207 3.2178 -9.8902 26 1 0.1136 1.8352 -11.6998 27 1 -1.5055 0.9366 -10.1340 28 6 2.3685 3.7208 -6.2671 29 6 2.7441 4.5504 -5.2356 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 4.4589 0.0441 1.5661 34 1 3.3457 1.3147 2.1705 35 1 6.1892 1.6437 1.0582 36 1 5.4749 2.3805 2.5312 37 1 4.0951 3.8776 1.2520 38 1 5.5795 3.8330 0.2523 39 1 4.7022 5.0971 -1.1814 40 1 4.2908 6.0473 -3.3877 41 1 5.0031 2.5100 -3.7161 42 1 4.3144 1.0366 -5.5563 43 1 1.2059 -0.5383 -10.0540 44 1 1.6343 4.0529 -6.9862 45 1 2.3050 5.5329 -5.1445 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255615618.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:50 Heat of formation + Delta-G solvation = -77.993366 kcal Electronic energy + Delta-G solvation = -30191.461595 eV Core-core repulsion = 25948.418401 eV Total energy + Delta-G solvation = -4243.043193 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.99320 -39.61227 -38.82468 -37.66482 -36.29990 -36.20314 -33.09196 -32.21507 -31.75227 -30.39655 -30.08748 -28.00319 -27.53737 -25.47739 -24.63490 -23.01023 -22.12903 -21.77427 -21.19923 -20.10542 -18.63051 -18.01026 -17.88059 -17.41680 -16.75871 -16.61768 -16.26581 -15.92165 -14.85644 -14.71290 -14.58242 -14.26705 -14.05628 -13.89396 -13.70536 -13.50785 -13.26924 -13.17423 -13.11536 -12.94229 -12.69999 -12.44484 -12.14302 -12.07750 -11.94366 -11.68738 -11.64036 -11.34807 -11.30897 -11.00222 -10.80860 -10.65468 -10.58502 -10.47843 -10.38849 -9.51789 -9.41451 -9.14176 -8.78664 -8.68336 -7.89961 -6.84786 -6.44350 -3.99895 1.24143 2.14538 2.44067 2.46737 2.72087 3.07354 3.14574 3.16184 3.21177 3.64180 3.98545 4.06160 4.16548 4.50493 4.71314 4.75133 4.84445 4.97027 5.05345 5.09065 5.12614 5.16674 5.22362 5.29617 5.35643 5.37593 5.42949 5.47643 5.52608 5.59966 5.74307 5.76184 5.86445 6.03354 6.27509 6.33781 6.36609 6.47860 6.61496 6.80707 7.05540 7.14559 7.37460 7.45395 7.52106 7.52829 7.75308 7.94133 8.02689 8.45106 9.01524 9.73589 10.73643 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013070 B = 0.002910 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.843167 B = 9621.112485 C =10842.528340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.359 6.359 3 C 0.455 3.545 4 O -0.492 6.492 5 C 0.149 3.851 6 H 0.111 0.889 7 C -0.117 4.117 8 C -0.131 4.131 9 C 0.101 3.899 10 N -0.609 5.609 11 C 0.563 3.437 12 O -0.501 6.501 13 C -0.260 4.260 14 C 0.030 3.970 15 C -0.191 4.191 16 C 0.011 3.989 17 C -0.202 4.202 18 C 0.172 3.828 19 O -0.173 6.173 20 C -0.389 4.389 21 H 0.094 0.906 22 C 0.039 3.961 23 N -0.860 5.860 24 Si 0.942 3.058 25 H -0.266 1.266 26 H -0.275 1.275 27 H -0.276 1.276 28 C -0.250 4.250 29 C -0.040 4.040 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.101 0.899 42 H 0.114 0.886 43 H 0.270 0.730 44 H 0.126 0.874 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.772 4.495 23.358 24.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.275 6.275 3 C 0.296 3.704 4 O -0.378 6.378 5 C 0.043 3.957 6 H 0.129 0.871 7 C -0.155 4.155 8 C -0.169 4.169 9 C -0.021 4.021 10 N -0.346 5.346 11 C 0.356 3.644 12 O -0.376 6.376 13 C -0.281 4.281 14 C 0.010 3.990 15 C -0.191 4.191 16 C -0.007 4.007 17 C -0.222 4.222 18 C 0.117 3.883 19 O -0.075 6.075 20 C -0.465 4.465 21 H 0.111 0.889 22 C -0.166 4.166 23 N -0.494 5.494 24 Si 0.766 3.234 25 H -0.190 1.190 26 H -0.201 1.201 27 H -0.201 1.201 28 C -0.269 4.269 29 C -0.059 4.059 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.119 0.881 42 H 0.132 0.868 43 H 0.080 0.920 44 H 0.144 0.856 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.186 4.067 22.546 23.730 hybrid contribution -1.135 0.424 -0.380 1.270 sum 5.050 4.491 22.166 23.173 Atomic orbital electron populations 1.23254 0.76222 1.03632 1.02564 1.86472 1.23552 1.33341 1.84180 1.24037 0.92213 0.81677 0.72506 1.90663 1.66703 1.36408 1.43993 1.21037 0.87172 0.88673 0.98830 0.87124 1.22610 0.98399 1.01724 0.92805 1.22819 0.97882 0.95264 1.00954 1.22339 0.95609 0.95841 0.88358 1.48396 1.55640 1.15854 1.14759 1.18241 0.79951 0.86745 0.79480 1.91013 1.38958 1.62506 1.45144 1.22490 1.11243 0.96305 0.98104 1.22356 0.87456 0.97656 0.91486 1.18299 1.05787 0.96320 0.98736 1.20435 0.95888 0.91109 0.93307 1.20002 1.03678 1.00894 0.97599 1.19522 0.91966 0.89540 0.87277 1.83906 1.47430 1.41878 1.34335 1.21449 1.11601 1.01522 1.11965 0.88854 1.25322 0.98636 0.95070 0.97551 1.70032 1.40411 1.07313 1.31679 0.85634 0.79600 0.78915 0.79219 1.19032 1.20098 1.20118 1.20956 1.07493 0.95730 1.02770 1.20742 0.94926 0.97699 0.92496 0.92215 0.91606 0.88057 0.88427 0.90180 0.89794 0.89259 0.91309 0.89715 0.86011 0.85858 0.88115 0.86817 0.92023 0.85637 0.87594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.49 16 2 O -0.36 -4.95 10.57 -39.26 -0.41 -5.37 16 3 C 0.46 6.84 6.40 36.00 0.23 7.07 16 4 O -0.49 -8.96 15.87 -18.75 -0.30 -9.26 16 5 C 0.15 1.77 3.36 -68.06 -0.23 1.54 16 6 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 7 C -0.12 -0.82 6.48 -24.84 -0.16 -0.98 16 8 C -0.13 -0.70 7.08 -24.59 -0.17 -0.88 16 9 C 0.10 0.81 6.48 -2.53 -0.02 0.79 16 10 N -0.61 -7.76 2.76 -165.96 -0.46 -8.22 16 11 C 0.56 9.23 6.20 -13.04 -0.08 9.15 16 12 O -0.50 -10.56 11.98 5.17 0.06 -10.50 16 13 C -0.26 -3.59 9.30 -37.51 -0.35 -3.94 16 14 C 0.03 0.44 9.80 -37.19 -0.36 0.08 16 15 C -0.19 -3.67 4.54 -105.03 -0.48 -4.15 16 16 C 0.01 0.23 6.60 -39.15 -0.26 -0.03 16 17 C -0.20 -4.77 9.97 -39.47 -0.39 -5.16 16 18 C 0.17 4.48 6.66 -38.88 -0.26 4.22 16 19 O -0.17 -5.18 9.74 0.71 0.01 -5.17 16 20 C -0.39 -11.29 9.48 30.91 0.29 -11.00 16 21 H 0.09 2.52 5.18 -52.48 -0.27 2.25 16 22 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 23 N -0.86 -25.78 13.67 55.48 0.76 -25.02 16 24 Si 0.94 21.08 29.55 -169.99 -5.02 16.06 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 27 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 28 C -0.25 -5.90 9.14 -39.46 -0.36 -6.26 16 29 C -0.04 -0.82 9.78 -39.15 -0.38 -1.20 16 30 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 31 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 32 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.56 7.85 -51.93 -0.41 0.15 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.55 7.24 -51.93 -0.38 0.17 16 39 H 0.12 1.22 6.96 -52.48 -0.37 0.86 16 40 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 41 H 0.10 1.88 7.02 -52.49 -0.37 1.51 16 42 H 0.11 2.60 8.06 -52.48 -0.42 2.18 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.13 2.93 5.62 -52.49 -0.29 2.63 16 45 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 380.27 15.07 5.73 5.73 Total: -1.00 -37.90 380.27 -7.52 -45.42 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -5.87 Total: 4.58 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -2.01 Total: -8.25 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.30 Total: -33.24 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.64 Total: -30.30 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.90 -7.52 -45.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255615618.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.576 kcal (2) G-P(sol) polarization free energy of solvation -37.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds