Wall clock time and date at job start Wed Apr 1 2020 03:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 117.00336 * 2 1 4 4 O 1.20825 * 119.99249 * 0.02562 * 3 2 1 5 5 C 1.50690 * 120.00259 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.87358 * 40.43975 * 5 3 2 7 7 C 1.54422 * 110.00847 * 279.35062 * 5 3 2 8 8 C 1.55157 * 102.89513 * 218.32107 * 7 5 3 9 9 C 1.54905 * 101.61889 * 35.49779 * 8 7 5 10 10 N 1.47023 * 109.88221 * 161.45526 * 5 3 2 11 11 C 1.34784 * 125.64769 * 298.47499 * 10 5 3 12 12 O 1.21726 * 119.99808 * 0.02562 * 11 10 5 13 13 C 1.46250 * 120.00089 * 180.02562 * 11 10 5 14 14 C 1.35018 * 119.99900 * 173.20740 * 13 11 10 15 15 C 1.46961 * 120.00294 * 348.68352 * 14 13 11 16 16 C 1.40022 * 120.09535 * 316.40245 * 15 14 13 17 17 C 1.37598 * 119.89426 * 179.69368 * 16 15 14 18 18 C 1.39175 * 120.10076 * 0.60756 * 17 16 15 19 19 O 1.35572 * 119.89924 * 179.69721 * 18 17 16 20 20 C 1.34788 * 117.00206 * 174.33615 * 19 18 17 21 21 H 1.08003 * 119.99757 * 5.05705 * 20 19 18 22 22 C 1.38718 * 120.00235 * 185.05885 * 20 19 18 23 23 N 1.31501 * 119.99793 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99785 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47383 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47109 * 120.00124 * 24 22 20 27 27 H 1.48501 * 109.46913 * 239.99927 * 24 22 20 28 28 C 1.39180 * 120.20479 * 359.67112 * 18 17 16 29 29 C 1.37600 * 120.09588 * 0.02562 * 28 18 17 30 30 H 1.08999 * 109.47081 * 299.99734 * 1 2 3 31 31 H 1.08993 * 109.46955 * 60.00049 * 1 2 3 32 32 H 1.09007 * 109.46886 * 180.02562 * 1 2 3 33 33 H 1.08998 * 110.76305 * 99.96858 * 7 5 3 34 34 H 1.08996 * 110.72619 * 336.65594 * 7 5 3 35 35 H 1.08998 * 111.00733 * 277.40325 * 8 7 5 36 36 H 1.09000 * 111.00827 * 153.59314 * 8 7 5 37 37 H 1.09000 * 110.36868 * 81.80669 * 9 8 7 38 38 H 1.08992 * 110.37320 * 204.13549 * 9 8 7 39 39 H 1.08004 * 119.99618 * 353.20182 * 13 11 10 40 40 H 1.08005 * 119.99533 * 168.68425 * 14 13 11 41 41 H 1.07996 * 120.05771 * 0.02562 * 16 15 14 42 42 H 1.08004 * 119.95188 * 180.32269 * 17 16 15 43 43 H 0.97003 * 119.99999 * 179.97438 * 23 22 20 44 44 H 1.07997 * 119.94865 * 180.02562 * 28 18 17 45 45 H 1.07998 * 120.04520 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9769 0.5152 -0.6658 7 6 4.1069 1.0667 1.4309 8 6 5.2896 2.0684 1.5034 9 6 4.7527 3.2470 0.6536 10 7 3.9969 2.6101 -0.4402 11 6 3.7434 3.1603 -1.6442 12 8 3.1063 2.5395 -2.4751 13 6 4.2336 4.5034 -1.9523 14 6 4.1002 5.0009 -3.2003 15 6 3.6959 4.1186 -4.3039 16 6 4.2656 2.8457 -4.4300 17 6 3.8794 2.0206 -5.4611 18 6 2.9332 2.4542 -6.3851 19 8 2.5602 1.6402 -7.4031 20 6 1.5572 2.0701 -8.1943 21 1 1.1447 3.0583 -8.0543 22 6 1.0548 1.2432 -9.1884 23 7 1.5575 0.0401 -9.3591 24 14 -0.3356 1.8388 -10.2844 25 1 -0.7207 3.2178 -9.8902 26 1 0.1136 1.8352 -11.6998 27 1 -1.5055 0.9366 -10.1340 28 6 2.3685 3.7208 -6.2671 29 6 2.7441 4.5504 -5.2356 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 4.4589 0.0441 1.5661 34 1 3.3457 1.3147 2.1705 35 1 6.1892 1.6437 1.0582 36 1 5.4749 2.3805 2.5312 37 1 4.0951 3.8776 1.2520 38 1 5.5795 3.8330 0.2523 39 1 4.7022 5.0971 -1.1814 40 1 4.2908 6.0473 -3.3877 41 1 5.0031 2.5100 -3.7161 42 1 4.3144 1.0366 -5.5563 43 1 1.2059 -0.5383 -10.0540 44 1 1.6343 4.0529 -6.9862 45 1 2.3050 5.5329 -5.1445 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255615618.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:49 Heat of formation + Delta-G solvation = -103.353425 kcal Electronic energy + Delta-G solvation = -30192.561289 eV Core-core repulsion = 25948.418401 eV Total energy + Delta-G solvation = -4244.142888 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.07525 -41.00365 -40.42631 -38.90164 -37.83041 -37.46015 -34.65862 -34.01493 -32.75707 -31.86696 -31.20569 -29.57692 -28.47662 -27.46672 -25.69584 -24.26082 -23.56026 -22.98049 -22.40812 -21.31584 -20.03126 -19.56929 -19.09806 -18.83685 -18.42201 -17.67785 -17.32230 -17.06628 -16.42500 -16.29285 -16.04360 -15.70916 -15.48545 -15.29455 -14.98756 -14.68886 -14.63363 -14.39103 -14.27543 -14.14457 -13.99750 -13.72758 -13.59277 -13.42329 -13.13227 -12.97429 -12.79615 -12.66449 -12.38404 -12.32327 -12.13049 -12.06104 -11.92632 -11.88278 -11.50879 -11.27255 -11.01820 -10.75092 -10.42451 -9.89749 -9.54792 -8.60117 -8.51200 -6.18529 -0.07461 0.67770 0.99517 1.08234 1.31159 1.41763 1.50152 1.50692 2.08563 2.14675 2.43671 2.83891 3.16796 3.37300 3.49142 3.49261 3.77159 3.90386 3.97454 4.04566 4.10827 4.12962 4.16407 4.18781 4.20693 4.49444 4.50845 4.53823 4.56695 4.71945 4.76357 4.77733 4.88171 5.00667 5.04782 5.06800 5.16014 5.21646 5.23588 5.28272 5.32397 5.43495 5.63739 5.68807 5.79917 5.99673 6.21002 6.44580 6.62191 6.92641 7.24649 7.74139 8.72240 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013070 B = 0.002910 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.843167 B = 9621.112485 C =10842.528340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.449 3.551 4 O -0.533 6.533 5 C 0.139 3.861 6 H 0.104 0.896 7 C -0.109 4.109 8 C -0.118 4.118 9 C 0.089 3.911 10 N -0.607 5.607 11 C 0.544 3.456 12 O -0.564 6.564 13 C -0.229 4.229 14 C 0.010 3.990 15 C -0.163 4.163 16 C 0.016 3.984 17 C -0.221 4.221 18 C 0.128 3.872 19 O -0.230 6.230 20 C -0.416 4.416 21 H 0.101 0.899 22 C -0.023 4.023 23 N -0.919 5.919 24 Si 1.022 2.978 25 H -0.252 1.252 26 H -0.263 1.263 27 H -0.268 1.268 28 C -0.260 4.260 29 C -0.048 4.048 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.134 0.866 33 H 0.120 0.880 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.120 0.880 37 H 0.075 0.925 38 H 0.109 0.891 39 H 0.174 0.826 40 H 0.173 0.827 41 H 0.121 0.879 42 H 0.103 0.897 43 H 0.274 0.726 44 H 0.119 0.881 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.155 7.404 27.298 29.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.280 6.280 3 C 0.292 3.708 4 O -0.421 6.421 5 C 0.032 3.968 6 H 0.122 0.878 7 C -0.147 4.147 8 C -0.155 4.155 9 C -0.032 4.032 10 N -0.342 5.342 11 C 0.338 3.662 12 O -0.444 6.444 13 C -0.249 4.249 14 C -0.009 4.009 15 C -0.164 4.164 16 C -0.002 4.002 17 C -0.240 4.240 18 C 0.077 3.923 19 O -0.136 6.136 20 C -0.492 4.492 21 H 0.118 0.882 22 C -0.221 4.221 23 N -0.557 5.557 24 Si 0.840 3.160 25 H -0.175 1.175 26 H -0.188 1.188 27 H -0.193 1.193 28 C -0.279 4.279 29 C -0.066 4.066 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.152 0.848 33 H 0.138 0.862 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.138 0.862 37 H 0.093 0.907 38 H 0.127 0.873 39 H 0.191 0.809 40 H 0.191 0.809 41 H 0.139 0.861 42 H 0.121 0.879 43 H 0.083 0.917 44 H 0.137 0.863 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.629 7.004 26.598 28.543 hybrid contribution -1.395 -0.380 -1.057 1.791 sum 6.234 6.624 25.541 27.112 Atomic orbital electron populations 1.23474 0.75188 1.05648 1.01871 1.86476 1.24743 1.33061 1.83755 1.24804 0.93567 0.81302 0.71131 1.90628 1.67809 1.37525 1.46155 1.21425 0.85096 0.88381 1.01876 0.87812 1.22708 0.99010 1.03801 0.89145 1.22862 0.97050 0.93316 1.02293 1.22769 0.95944 0.97086 0.87397 1.48525 1.54594 1.16269 1.14767 1.18924 0.79504 0.87676 0.80097 1.91003 1.41758 1.64217 1.47404 1.22977 1.08135 0.94783 0.99036 1.22628 0.88896 0.99161 0.90185 1.18886 1.02856 0.95866 0.98807 1.20668 0.96033 0.91459 0.92088 1.20193 1.03938 1.01398 0.98511 1.19999 0.93671 0.90690 0.87894 1.83874 1.49317 1.43886 1.36542 1.21921 1.12306 1.02282 1.12731 0.88169 1.26670 1.01454 0.95059 0.98880 1.70176 1.43002 1.09162 1.33398 0.84498 0.75558 0.78910 0.76990 1.17535 1.18774 1.19303 1.21085 1.07442 0.95398 1.03969 1.21176 0.94991 0.98896 0.91577 0.90954 0.94227 0.84763 0.86191 0.89995 0.88729 0.86168 0.90700 0.87286 0.80897 0.80949 0.86134 0.87888 0.91695 0.86281 0.83611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.56 113.37 1.20 1.93 16 2 O -0.36 -10.13 10.57 -51.42 -0.54 -10.68 16 3 C 0.45 13.49 6.40 71.23 0.46 13.94 16 4 O -0.53 -19.56 15.87 21.97 0.35 -19.21 16 5 C 0.14 3.08 3.36 44.63 0.15 3.23 16 6 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 7 C -0.11 -1.15 6.48 31.82 0.21 -0.95 16 8 C -0.12 -0.66 7.08 31.98 0.23 -0.44 16 9 C 0.09 0.98 6.48 86.85 0.56 1.54 16 10 N -0.61 -13.78 2.76 -797.17 -2.20 -15.98 16 11 C 0.54 16.58 6.20 86.32 0.54 17.12 16 12 O -0.56 -23.75 11.98 -4.43 -0.05 -23.80 16 13 C -0.23 -5.16 9.30 23.61 0.22 -4.94 16 14 C 0.01 0.26 9.80 23.82 0.23 0.49 16 15 C -0.16 -6.01 4.54 -20.13 -0.09 -6.10 16 16 C 0.02 0.65 6.60 22.55 0.15 0.80 16 17 C -0.22 -11.12 9.97 22.34 0.22 -10.90 16 18 C 0.13 7.21 6.66 22.72 0.15 7.36 16 19 O -0.23 -15.05 9.74 -20.36 -0.20 -15.25 16 20 C -0.42 -25.97 9.48 67.93 0.64 -25.32 16 21 H 0.10 5.79 5.18 -2.91 -0.02 5.78 16 22 C -0.02 -1.39 5.49 84.86 0.47 -0.92 16 23 N -0.92 -58.98 13.67 21.62 0.30 -58.68 16 24 Si 1.02 45.09 29.55 68.60 2.03 47.11 16 25 H -0.25 -10.34 7.11 99.48 0.71 -9.64 16 26 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 27 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 28 C -0.26 -12.78 9.14 22.35 0.20 -12.57 16 29 C -0.05 -1.92 9.78 22.55 0.22 -1.70 16 30 H 0.07 1.47 8.13 -2.39 -0.02 1.45 16 31 H 0.04 1.11 8.13 -2.39 -0.02 1.09 16 32 H 0.13 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 0.88 7.85 -2.39 -0.02 0.86 16 35 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 37 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.11 0.71 7.24 -2.39 -0.02 0.69 16 39 H 0.17 2.17 6.96 -2.91 -0.02 2.15 16 40 H 0.17 2.74 8.06 -2.91 -0.02 2.71 16 41 H 0.12 4.41 7.02 -2.91 -0.02 4.39 16 42 H 0.10 5.19 8.06 -2.91 -0.02 5.17 16 43 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 44 H 0.12 5.86 5.62 -2.91 -0.02 5.85 16 45 H 0.15 4.55 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -94.56 380.27 6.45 -88.11 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 1.02 Total: 25.81 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: 5.75 Total: -17.43 kcal Atomic # 7 Polarization: -72.76 SS G_CDS: -1.90 Total: -74.66 kcal Atomic # 8 Polarization: -68.50 SS G_CDS: -0.45 Total: -68.94 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -94.56 6.45 -88.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255615618.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.246 kcal (2) G-P(sol) polarization free energy of solvation -94.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds