Wall clock time and date at job start Wed Apr 1 2020 02:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42894 * 109.47192 * 2 1 4 4 C 1.53006 * 109.46523 * 119.99764 * 2 1 3 5 5 N 1.46498 * 109.47321 * 304.99797 * 4 2 1 6 6 C 1.34775 * 119.99904 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00014 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00040 * 179.97438 * 6 5 4 9 9 C 1.50695 * 109.47436 * 179.97438 * 8 6 5 10 10 C 1.38300 * 119.93634 * 269.73208 * 9 8 6 11 11 C 1.38103 * 120.07235 * 179.72038 * 10 9 8 12 12 C 1.38881 * 119.92859 * 0.56979 * 11 10 9 13 13 O 1.35743 * 120.07033 * 179.67702 * 12 11 10 14 14 C 1.34829 * 117.00323 * 174.48588 * 13 12 11 15 15 H 1.08000 * 119.99772 * 5.06302 * 14 13 12 16 16 C 1.38655 * 120.00285 * 185.06067 * 14 13 12 17 17 N 1.31556 * 119.99986 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99817 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47529 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47049 * 119.99936 * 18 16 14 21 21 H 1.48497 * 109.46877 * 239.99598 * 18 16 14 22 22 C 1.38884 * 119.86119 * 359.70391 * 12 11 10 23 23 C 1.38100 * 119.93123 * 0.02562 * 22 12 11 24 24 C 1.50698 * 109.47158 * 239.99497 * 2 1 3 25 25 C 1.34514 * 125.78380 * 89.72140 * 24 2 1 26 26 C 1.41393 * 106.83726 * 179.89096 * 25 24 2 27 27 C 1.34510 * 106.83991 * 0.36562 * 26 25 24 28 28 O 1.34297 * 125.79097 * 270.02876 * 24 2 1 29 29 H 1.09007 * 109.47205 * 300.00325 * 1 2 3 30 30 H 1.09001 * 109.47058 * 59.99857 * 1 2 3 31 31 H 1.08995 * 109.47361 * 179.97438 * 1 2 3 32 32 H 0.96706 * 114.00165 * 179.97438 * 3 2 1 33 33 H 1.09007 * 109.46497 * 185.00080 * 4 2 1 34 34 H 1.08996 * 109.47410 * 65.00567 * 4 2 1 35 35 H 0.96999 * 119.99614 * 0.02562 * 5 4 2 36 36 H 1.08999 * 109.47119 * 60.00120 * 8 6 5 37 37 H 1.09004 * 109.47334 * 300.00265 * 8 6 5 38 38 H 1.08004 * 119.96372 * 359.97187 * 10 9 8 39 39 H 1.07998 * 120.03412 * 180.26808 * 11 10 9 40 40 H 0.97002 * 119.99992 * 180.02562 * 17 16 14 41 41 H 1.07996 * 120.03050 * 179.97438 * 22 12 11 42 42 H 1.08003 * 119.96708 * 180.02562 * 23 22 12 43 43 H 1.08005 * 126.58526 * 0.02562 * 25 24 2 44 44 H 1.07995 * 126.57461 * 180.16485 * 26 25 24 45 45 H 1.07997 * 125.78804 * 179.75074 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0399 -0.7213 1.2494 5 7 1.4557 -0.1036 2.4424 6 6 1.7645 -0.5767 3.6660 7 8 2.5264 -1.5135 3.7794 8 6 1.1641 0.0590 4.8933 9 6 1.6662 -0.6515 6.1238 10 6 0.9671 -1.7319 6.6305 11 6 1.4278 -2.3886 7.7546 12 6 2.5881 -1.9557 8.3833 13 8 3.0399 -2.5950 9.4923 14 6 4.2299 -2.1974 9.9860 15 1 4.7391 -1.3502 9.5509 16 6 4.7998 -2.8762 11.0522 17 7 4.1797 -3.9085 11.5819 18 14 6.4482 -2.3248 11.7366 19 1 6.9341 -1.1492 10.9705 20 1 6.2918 -1.9545 13.1662 21 1 7.4294 -3.4330 11.6169 22 6 3.2847 -0.8668 7.8754 23 6 2.8219 -0.2178 6.7477 24 6 2.0323 -0.7105 -1.2304 25 6 2.2895 -0.1373 -2.4198 26 6 2.7398 -1.1645 -3.2807 27 6 2.7231 -2.3053 -2.5682 28 8 2.2936 -2.0243 -1.3270 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 2.9704 1.4236 0.0004 33 1 3.1262 -0.6443 1.2953 34 1 1.7516 -1.7715 1.2057 35 1 0.8467 0.6459 2.3517 36 1 0.0778 -0.0178 4.8478 37 1 1.4526 1.1093 4.9366 38 1 0.0622 -2.0649 6.1441 39 1 0.8838 -3.2349 8.1472 40 1 4.5783 -4.3831 12.3281 41 1 4.1870 -0.5276 8.3624 42 1 3.3634 0.6287 6.3520 43 1 2.1761 0.9076 -2.6687 44 1 3.0368 -1.0548 -4.3132 45 1 3.0065 -3.2817 -2.9325 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266644542.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:18 Heat of formation + Delta-G solvation = -69.622406 kcal Electronic energy + Delta-G solvation = -28670.442935 eV Core-core repulsion = 24427.762734 eV Total energy + Delta-G solvation = -4242.680201 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.04762 -39.97739 -38.93884 -38.25228 -36.44081 -34.57568 -33.31979 -32.50276 -32.23513 -31.23125 -30.09270 -29.05526 -27.64182 -26.08018 -24.97543 -22.87589 -22.09419 -21.91382 -21.00739 -20.63875 -20.04443 -18.53924 -17.92783 -17.52899 -16.87739 -16.60851 -16.54275 -15.74156 -15.68729 -15.05822 -14.92772 -14.53157 -14.32453 -14.17035 -13.68012 -13.55893 -13.50156 -13.31685 -13.23813 -13.07038 -12.97317 -12.83574 -12.64662 -12.46760 -12.30627 -11.85503 -11.77160 -11.44578 -11.23416 -10.93214 -10.78524 -10.70198 -10.55120 -10.38145 -10.33322 -9.71243 -9.26916 -9.17586 -8.95429 -8.77733 -8.09114 -7.10637 -6.40087 -3.98448 1.26295 2.18642 2.30177 2.31531 2.46539 2.79631 3.06674 3.16254 3.17965 3.22779 3.65486 4.01080 4.04545 4.18031 4.41870 4.59962 4.63188 4.71552 4.99986 5.13397 5.13967 5.21045 5.26217 5.32808 5.33785 5.38299 5.40477 5.50511 5.54030 5.60948 5.67202 5.71578 5.78785 5.90648 6.04819 6.27414 6.28998 6.47773 6.64679 6.76188 6.97311 6.98855 7.11222 7.29655 7.42838 7.45570 7.51038 7.89944 8.05535 8.33936 9.05852 9.76963 10.78224 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019593 B = 0.001810 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.749001 B =15467.051671 C =15956.751006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.210 3.790 3 O -0.537 6.537 4 C 0.098 3.902 5 N -0.735 5.735 6 C 0.508 3.492 7 O -0.519 6.519 8 C -0.079 4.079 9 C -0.170 4.170 10 C -0.060 4.060 11 C -0.191 4.191 12 C 0.156 3.844 13 O -0.179 6.179 14 C -0.390 4.390 15 H 0.092 0.908 16 C 0.038 3.962 17 N -0.864 5.864 18 Si 0.941 3.059 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.232 4.232 23 C -0.057 4.057 24 C -0.050 4.050 25 C -0.187 4.187 26 C -0.219 4.219 27 C -0.032 4.032 28 O -0.167 6.167 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.385 0.615 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.401 0.599 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.269 0.731 41 H 0.126 0.874 42 H 0.104 0.896 43 H 0.151 0.849 44 H 0.150 0.850 45 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.724 10.168 -28.054 30.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.168 3.832 3 O -0.344 6.344 4 C -0.027 4.027 5 N -0.391 5.391 6 C 0.295 3.705 7 O -0.393 6.393 8 C -0.119 4.119 9 C -0.171 4.171 10 C -0.078 4.078 11 C -0.211 4.211 12 C 0.103 3.897 13 O -0.083 6.083 14 C -0.466 4.466 15 H 0.110 0.890 16 C -0.166 4.166 17 N -0.499 5.499 18 Si 0.766 3.234 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.252 4.252 23 C -0.075 4.075 24 C -0.101 4.101 25 C -0.206 4.206 26 C -0.238 4.238 27 C -0.100 4.100 28 O -0.063 6.063 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.235 0.765 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.237 0.763 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.126 0.874 39 H 0.134 0.866 40 H 0.079 0.921 41 H 0.144 0.856 42 H 0.122 0.878 43 H 0.169 0.831 44 H 0.167 0.833 45 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -6.876 9.046 -27.374 29.638 hybrid contribution 1.393 0.519 -0.211 1.501 sum -5.483 9.565 -27.585 29.707 Atomic orbital electron populations 1.21801 0.90187 1.03586 1.03789 1.19586 0.95329 0.81171 0.87121 1.86603 1.27891 1.23572 1.96304 1.21873 0.98902 0.98104 0.83830 1.46010 1.50527 1.37264 1.05282 1.21100 0.81503 0.83722 0.84153 1.90758 1.34611 1.27574 1.86339 1.20398 1.01034 0.99961 0.90469 1.18633 0.99281 1.01033 0.98153 1.20403 0.98252 0.94261 0.94903 1.20156 0.98393 1.03620 0.98900 1.19382 0.92703 0.90807 0.86827 1.83974 1.35481 1.54394 1.34406 1.21376 0.94987 1.14957 1.15289 0.89041 1.25289 0.99519 0.95550 0.96262 1.70052 1.38178 1.18453 1.23197 0.85647 0.80247 0.78685 0.78837 1.19122 1.20184 1.20176 1.21107 1.03661 0.99992 1.00407 1.20512 0.94397 0.98077 0.94523 1.22968 1.06566 0.82030 0.98510 1.21588 1.05421 1.01075 0.92498 1.21888 1.07605 0.92625 1.01653 1.24178 1.02838 1.00796 0.82218 1.84062 1.64884 1.25308 1.32030 0.90553 0.90926 0.90258 0.76548 0.90984 0.90024 0.76316 0.88933 0.88932 0.87378 0.86554 0.92139 0.85600 0.87835 0.83091 0.83271 0.77873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.60 37.16 0.32 -0.54 16 2 C 0.21 1.55 1.01 -91.77 -0.09 1.45 16 3 O -0.54 -3.56 12.54 -35.23 -0.44 -4.00 16 4 C 0.10 0.94 4.64 -4.04 -0.02 0.92 16 5 N -0.73 -7.13 5.19 -60.29 -0.31 -7.44 16 6 C 0.51 7.03 7.82 -10.99 -0.09 6.94 16 7 O -0.52 -9.92 16.03 5.56 0.09 -9.84 16 8 C -0.08 -0.99 5.83 -29.04 -0.17 -1.16 16 9 C -0.17 -3.00 4.38 -104.58 -0.46 -3.46 16 10 C -0.06 -1.13 9.69 -39.61 -0.38 -1.51 16 11 C -0.19 -4.26 9.99 -39.39 -0.39 -4.66 16 12 C 0.16 3.96 6.65 -39.10 -0.26 3.70 16 13 O -0.18 -5.28 9.76 0.07 0.00 -5.28 16 14 C -0.39 -11.22 9.49 30.89 0.29 -10.93 16 15 H 0.09 2.45 5.20 -52.49 -0.27 2.18 16 16 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 17 N -0.86 -25.89 13.67 55.48 0.76 -25.13 16 18 Si 0.94 21.06 29.55 -169.99 -5.02 16.04 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 C -0.23 -5.31 9.17 -39.39 -0.36 -5.67 16 23 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 24 C -0.05 -0.42 5.85 -35.63 -0.21 -0.62 16 25 C -0.19 -1.43 10.36 -39.70 -0.41 -1.84 16 26 C -0.22 -1.53 10.91 -39.70 -0.43 -1.96 16 27 C -0.03 -0.23 12.09 29.41 0.36 0.13 16 28 O -0.17 -1.56 10.15 5.70 0.06 -1.51 16 29 H 0.08 0.40 6.57 -51.93 -0.34 0.06 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.39 1.69 9.04 45.56 0.41 2.10 16 33 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 34 H 0.08 0.92 7.92 -51.93 -0.41 0.51 16 35 H 0.40 2.81 6.99 -40.82 -0.29 2.53 16 36 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 37 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 38 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 39 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 40 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16 42 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 43 H 0.15 0.98 8.06 -52.48 -0.42 0.55 16 44 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.20 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 388.49 15.07 5.85 5.85 Total: -1.00 -36.63 388.49 -6.78 -43.41 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -4.97 Total: 7.63 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -2.79 Total: -19.73 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: 0.45 Total: -32.58 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.29 Total: -20.62 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.63 -6.78 -43.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266644542.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.214 kcal (2) G-P(sol) polarization free energy of solvation -36.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds