Wall clock time and date at job start Wed Apr 1 2020 02:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42894 * 109.47192 * 2 1 4 4 C 1.53006 * 109.46523 * 119.99764 * 2 1 3 5 5 N 1.46498 * 109.47321 * 304.99797 * 4 2 1 6 6 C 1.34775 * 119.99904 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00014 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00040 * 179.97438 * 6 5 4 9 9 C 1.50695 * 109.47436 * 179.97438 * 8 6 5 10 10 C 1.38300 * 119.93634 * 269.73208 * 9 8 6 11 11 C 1.38103 * 120.07235 * 179.72038 * 10 9 8 12 12 C 1.38881 * 119.92859 * 0.56979 * 11 10 9 13 13 O 1.35743 * 120.07033 * 179.67702 * 12 11 10 14 14 C 1.34829 * 117.00323 * 174.48588 * 13 12 11 15 15 H 1.08000 * 119.99772 * 5.06302 * 14 13 12 16 16 C 1.38655 * 120.00285 * 185.06067 * 14 13 12 17 17 N 1.31556 * 119.99986 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99817 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47529 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47049 * 119.99936 * 18 16 14 21 21 H 1.48497 * 109.46877 * 239.99598 * 18 16 14 22 22 C 1.38884 * 119.86119 * 359.70391 * 12 11 10 23 23 C 1.38100 * 119.93123 * 0.02562 * 22 12 11 24 24 C 1.50698 * 109.47158 * 239.99497 * 2 1 3 25 25 C 1.34514 * 125.78380 * 89.72140 * 24 2 1 26 26 C 1.41393 * 106.83726 * 179.89096 * 25 24 2 27 27 C 1.34510 * 106.83991 * 0.36562 * 26 25 24 28 28 O 1.34297 * 125.79097 * 270.02876 * 24 2 1 29 29 H 1.09007 * 109.47205 * 300.00325 * 1 2 3 30 30 H 1.09001 * 109.47058 * 59.99857 * 1 2 3 31 31 H 1.08995 * 109.47361 * 179.97438 * 1 2 3 32 32 H 0.96706 * 114.00165 * 179.97438 * 3 2 1 33 33 H 1.09007 * 109.46497 * 185.00080 * 4 2 1 34 34 H 1.08996 * 109.47410 * 65.00567 * 4 2 1 35 35 H 0.96999 * 119.99614 * 0.02562 * 5 4 2 36 36 H 1.08999 * 109.47119 * 60.00120 * 8 6 5 37 37 H 1.09004 * 109.47334 * 300.00265 * 8 6 5 38 38 H 1.08004 * 119.96372 * 359.97187 * 10 9 8 39 39 H 1.07998 * 120.03412 * 180.26808 * 11 10 9 40 40 H 0.97002 * 119.99992 * 180.02562 * 17 16 14 41 41 H 1.07996 * 120.03050 * 179.97438 * 22 12 11 42 42 H 1.08003 * 119.96708 * 180.02562 * 23 22 12 43 43 H 1.08005 * 126.58526 * 0.02562 * 25 24 2 44 44 H 1.07995 * 126.57461 * 180.16485 * 26 25 24 45 45 H 1.07997 * 125.78804 * 179.75074 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0399 -0.7213 1.2494 5 7 1.4557 -0.1036 2.4424 6 6 1.7645 -0.5767 3.6660 7 8 2.5264 -1.5135 3.7794 8 6 1.1641 0.0590 4.8933 9 6 1.6662 -0.6515 6.1238 10 6 0.9671 -1.7319 6.6305 11 6 1.4278 -2.3886 7.7546 12 6 2.5881 -1.9557 8.3833 13 8 3.0399 -2.5950 9.4923 14 6 4.2299 -2.1974 9.9860 15 1 4.7391 -1.3502 9.5509 16 6 4.7998 -2.8762 11.0522 17 7 4.1797 -3.9085 11.5819 18 14 6.4482 -2.3248 11.7366 19 1 6.9341 -1.1492 10.9705 20 1 6.2918 -1.9545 13.1662 21 1 7.4294 -3.4330 11.6169 22 6 3.2847 -0.8668 7.8754 23 6 2.8219 -0.2178 6.7477 24 6 2.0323 -0.7105 -1.2304 25 6 2.2895 -0.1373 -2.4198 26 6 2.7398 -1.1645 -3.2807 27 6 2.7231 -2.3053 -2.5682 28 8 2.2936 -2.0243 -1.3270 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 2.9704 1.4236 0.0004 33 1 3.1262 -0.6443 1.2953 34 1 1.7516 -1.7715 1.2057 35 1 0.8467 0.6459 2.3517 36 1 0.0778 -0.0178 4.8478 37 1 1.4526 1.1093 4.9366 38 1 0.0622 -2.0649 6.1441 39 1 0.8838 -3.2349 8.1472 40 1 4.5783 -4.3831 12.3281 41 1 4.1870 -0.5276 8.3624 42 1 3.3634 0.6287 6.3520 43 1 2.1761 0.9076 -2.6687 44 1 3.0368 -1.0548 -4.3132 45 1 3.0065 -3.2817 -2.9325 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266644542.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:17 Heat of formation + Delta-G solvation = -97.262469 kcal Electronic energy + Delta-G solvation = -28671.641498 eV Core-core repulsion = 24427.762734 eV Total energy + Delta-G solvation = -4243.878764 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.61381 -41.14204 -40.49019 -39.13459 -38.12869 -35.46088 -34.39664 -33.88446 -33.17889 -32.50387 -31.76577 -29.63698 -28.74947 -27.56039 -26.58802 -23.63160 -23.57706 -22.72785 -22.32013 -21.43352 -21.02533 -19.84175 -19.11442 -18.88289 -18.31646 -17.41305 -17.15375 -16.73481 -16.66431 -16.31834 -16.20161 -15.76026 -15.71684 -15.48443 -15.45898 -14.98633 -14.57473 -14.40314 -14.16425 -14.07291 -13.80705 -13.72847 -13.57300 -13.46758 -13.35128 -12.99160 -12.91999 -12.71276 -12.48486 -12.40516 -12.27317 -12.23496 -12.10113 -11.49627 -11.17100 -10.94871 -10.88728 -10.75072 -10.12915 -9.75339 -9.50260 -8.89205 -8.47582 -6.15611 0.62466 0.67269 0.70868 1.33498 1.42289 1.52442 1.65671 1.73203 1.94762 2.16558 2.18574 2.84498 3.10509 3.19505 3.40676 3.53228 3.64797 3.81047 3.87968 4.06900 4.12429 4.17763 4.22870 4.24839 4.48570 4.54334 4.60201 4.65226 4.71273 4.74215 4.78742 4.82044 4.91418 4.99300 5.09901 5.10822 5.15298 5.18800 5.31578 5.41519 5.55299 5.57576 5.72429 5.79139 6.03188 6.11101 6.24186 6.52990 6.61996 6.97075 7.35102 7.78828 8.76173 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019593 B = 0.001810 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.749001 B =15467.051671 C =15956.751006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.223 3.777 3 O -0.537 6.537 4 C 0.100 3.900 5 N -0.711 5.711 6 C 0.511 3.489 7 O -0.581 6.581 8 C -0.077 4.077 9 C -0.145 4.145 10 C -0.058 4.058 11 C -0.207 4.207 12 C 0.111 3.889 13 O -0.234 6.234 14 C -0.413 4.413 15 H 0.100 0.900 16 C -0.026 4.026 17 N -0.922 5.922 18 Si 1.021 2.979 19 H -0.252 1.252 20 H -0.265 1.265 21 H -0.269 1.269 22 C -0.245 4.245 23 C -0.061 4.061 24 C -0.068 4.068 25 C -0.190 4.190 26 C -0.227 4.227 27 C -0.041 4.041 28 O -0.190 6.190 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.395 0.605 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.419 0.581 36 H 0.134 0.866 37 H 0.130 0.870 38 H 0.148 0.852 39 H 0.112 0.888 40 H 0.273 0.727 41 H 0.117 0.883 42 H 0.139 0.861 43 H 0.162 0.838 44 H 0.169 0.831 45 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.416 13.088 -31.088 34.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.181 3.819 3 O -0.345 6.345 4 C -0.024 4.024 5 N -0.366 5.366 6 C 0.299 3.701 7 O -0.460 6.460 8 C -0.116 4.116 9 C -0.146 4.146 10 C -0.076 4.076 11 C -0.226 4.226 12 C 0.061 3.939 13 O -0.141 6.141 14 C -0.489 4.489 15 H 0.117 0.883 16 C -0.223 4.223 17 N -0.560 5.560 18 Si 0.840 3.160 19 H -0.176 1.176 20 H -0.190 1.190 21 H -0.194 1.194 22 C -0.264 4.264 23 C -0.079 4.079 24 C -0.118 4.118 25 C -0.209 4.209 26 C -0.246 4.246 27 C -0.108 4.108 28 O -0.087 6.087 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.246 0.754 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.258 0.742 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.166 0.834 39 H 0.130 0.870 40 H 0.082 0.918 41 H 0.134 0.866 42 H 0.156 0.844 43 H 0.180 0.820 44 H 0.186 0.814 45 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -7.623 12.046 -30.490 33.658 hybrid contribution 1.415 -0.264 0.346 1.480 sum -6.208 11.782 -30.144 32.954 Atomic orbital electron populations 1.21846 0.89214 1.03711 1.04743 1.19429 0.95892 0.81061 0.85555 1.86588 1.28955 1.22804 1.96144 1.21828 0.98238 0.97614 0.84770 1.45753 1.49673 1.36945 1.04203 1.21241 0.80628 0.82857 0.85422 1.90766 1.37591 1.30446 1.87223 1.20535 1.03287 1.00937 0.86837 1.19272 0.97330 0.99345 0.98683 1.20898 0.99480 0.93866 0.93348 1.20451 0.97814 1.04200 1.00155 1.19945 0.94444 0.92274 0.87231 1.83934 1.36482 1.56708 1.36988 1.21860 0.95484 1.15617 1.15964 0.88273 1.26627 1.03883 0.95474 0.96282 1.70196 1.40700 1.20557 1.24552 0.84509 0.74496 0.78704 0.78332 1.17559 1.18993 1.19419 1.21231 1.03480 0.99907 1.01773 1.20949 0.95126 0.98657 0.93152 1.23192 1.07476 0.81959 0.99190 1.21824 1.04928 1.01755 0.92416 1.22216 1.07432 0.92403 1.02583 1.24835 1.02211 1.02228 0.81542 1.84053 1.65479 1.25949 1.33221 0.89153 0.90423 0.90588 0.75425 0.92269 0.91807 0.74195 0.84846 0.85178 0.83446 0.87013 0.91845 0.86556 0.84364 0.82034 0.81372 0.75252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.60 71.98 0.62 -0.74 16 2 C 0.22 2.80 1.01 -11.54 -0.01 2.79 16 3 O -0.54 -5.56 12.54 -148.98 -1.87 -7.42 16 4 C 0.10 1.77 4.64 86.38 0.40 2.17 16 5 N -0.71 -11.28 5.19 -463.06 -2.40 -13.68 16 6 C 0.51 12.31 7.82 87.66 0.69 13.00 16 7 O -0.58 -21.32 16.03 -3.03 -0.05 -21.37 16 8 C -0.08 -1.50 5.83 29.10 0.17 -1.33 16 9 C -0.15 -4.67 4.38 -19.83 -0.09 -4.75 16 10 C -0.06 -2.06 9.69 22.25 0.22 -1.85 16 11 C -0.21 -9.45 9.99 22.39 0.22 -9.23 16 12 C 0.11 5.91 6.65 22.58 0.15 6.06 16 13 O -0.23 -14.84 9.76 -22.66 -0.22 -15.06 16 14 C -0.41 -25.19 9.49 67.92 0.64 -24.55 16 15 H 0.10 5.60 5.20 -2.91 -0.02 5.58 16 16 C -0.03 -1.51 5.49 84.83 0.47 -1.05 16 17 N -0.92 -58.42 13.67 21.61 0.30 -58.13 16 18 Si 1.02 44.52 29.55 68.60 2.03 46.55 16 19 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 20 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 22 C -0.24 -11.42 9.17 22.39 0.21 -11.22 16 23 C -0.06 -2.23 9.69 22.25 0.22 -2.02 16 24 C -0.07 -1.04 5.85 24.83 0.15 -0.89 16 25 C -0.19 -2.58 10.36 22.19 0.23 -2.35 16 26 C -0.23 -2.78 10.91 22.19 0.24 -2.54 16 27 C -0.04 -0.53 12.09 66.97 0.81 0.28 16 28 O -0.19 -3.42 10.15 -2.51 -0.03 -3.44 16 29 H 0.09 0.60 6.57 -2.38 -0.02 0.58 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.40 2.47 9.04 -74.05 -0.67 1.80 16 33 H 0.06 1.21 8.14 -2.38 -0.02 1.20 16 34 H 0.06 1.39 7.92 -2.39 -0.02 1.38 16 35 H 0.42 3.83 6.99 -92.71 -0.65 3.18 16 36 H 0.13 1.68 8.08 -2.39 -0.02 1.66 16 37 H 0.13 1.73 8.08 -2.38 -0.02 1.71 16 38 H 0.15 4.06 8.06 -2.91 -0.02 4.03 16 39 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 40 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 41 H 0.12 5.52 5.64 -2.91 -0.02 5.50 16 42 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 43 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 44 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 45 H 0.23 1.29 8.06 -2.91 -0.02 1.26 16 Total: -1.00 -87.55 388.49 2.81 -84.74 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: -0.27 Total: 26.02 kcal Atomic # 6 Polarization: -43.54 SS G_CDS: 5.32 Total: -38.22 kcal Atomic # 7 Polarization: -69.70 SS G_CDS: -2.11 Total: -71.81 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: -2.16 Total: -47.30 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -87.55 2.81 -84.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266644542.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.518 kcal (2) G-P(sol) polarization free energy of solvation -87.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds