Wall clock time and date at job start Wed Apr 1 2020 03:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34232 * 116.99824 * 2 1 4 4 O 1.20825 * 120.00252 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99779 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.47738 * 300.00401 * 5 3 2 7 7 N 1.46505 * 109.47136 * 180.02562 * 5 3 2 8 8 C 1.34771 * 120.00074 * 155.00254 * 7 5 3 9 9 O 1.21727 * 120.00207 * 359.97438 * 8 7 5 10 10 C 1.46256 * 120.00113 * 180.02562 * 8 7 5 11 11 C 1.35023 * 120.00169 * 179.97438 * 10 8 7 12 12 C 1.46963 * 120.00145 * 180.02562 * 11 10 8 13 13 C 1.40023 * 120.09754 * 359.72938 * 12 11 10 14 14 C 1.37598 * 119.89451 * 179.69556 * 13 12 11 15 15 C 1.39182 * 120.10110 * 0.60372 * 14 13 12 16 16 O 1.35571 * 119.90002 * 179.69636 * 15 14 13 17 17 C 1.34776 * 117.00063 * 174.41937 * 16 15 14 18 18 H 1.08002 * 120.00127 * 5.05756 * 17 16 15 19 19 C 1.38718 * 119.99911 * 185.05705 * 17 16 15 20 20 N 1.31508 * 120.00187 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00096 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47176 * 59.99599 * 21 19 17 23 23 H 1.48495 * 109.47409 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46789 * 299.99840 * 21 19 17 25 25 C 1.39174 * 120.20099 * 359.66759 * 15 14 13 26 26 C 1.37600 * 120.10219 * 0.03118 * 25 15 14 27 27 C 1.52996 * 109.47308 * 60.00660 * 5 3 2 28 28 C 1.52999 * 117.50035 * 231.25220 * 27 5 3 29 29 C 1.53007 * 117.49590 * 299.91381 * 27 5 3 30 30 H 1.09005 * 109.46652 * 299.99529 * 1 2 3 31 31 H 1.09004 * 109.47411 * 59.99209 * 1 2 3 32 32 H 1.08997 * 109.47058 * 179.97438 * 1 2 3 33 33 H 0.97000 * 119.99817 * 335.00745 * 7 5 3 34 34 H 1.07998 * 119.99990 * 0.02562 * 10 8 7 35 35 H 1.08004 * 119.99703 * 0.02562 * 11 10 8 36 36 H 1.08004 * 120.05436 * 359.97438 * 13 12 11 37 37 H 1.07998 * 119.94929 * 180.27120 * 14 13 12 38 38 H 0.97003 * 120.00059 * 180.02562 * 20 19 17 39 39 H 1.08001 * 119.94787 * 180.02562 * 25 15 14 40 40 H 1.08006 * 120.05163 * 180.02562 * 26 25 15 41 41 H 1.09004 * 115.55304 * 85.57680 * 27 5 3 42 42 H 1.08998 * 117.50016 * 214.99595 * 28 27 5 43 43 H 1.08998 * 117.49791 * 0.02562 * 28 27 5 44 44 H 1.09001 * 117.50016 * 359.96816 * 29 27 5 45 45 H 1.08997 * 117.49795 * 144.97409 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9565 0.7806 0.8891 7 7 3.9817 2.6798 0.0002 8 6 5.1874 3.0258 0.4931 9 8 5.9310 2.1710 0.9381 10 6 5.6018 4.4284 0.4943 11 6 6.8095 4.7751 0.9886 12 6 7.2258 6.1845 0.9904 13 6 6.3739 7.1689 0.4748 14 6 6.7652 8.4880 0.4843 15 6 8.0109 8.8430 0.9938 16 8 8.3948 10.1431 0.9955 17 6 9.5601 10.4363 1.6060 18 1 10.1814 9.6423 1.9933 19 6 9.9613 11.7577 1.7369 20 7 9.2045 12.7244 1.2657 21 14 11.5767 12.1640 2.5824 22 1 12.6955 11.5203 1.8480 23 1 11.7731 13.6358 2.5937 24 1 11.5454 11.6586 3.9784 25 6 8.8632 7.8672 1.5021 26 6 8.4778 6.5463 1.5024 27 6 4.1128 0.5817 -1.2502 28 6 5.2058 -0.4706 -1.0534 29 6 3.7873 -0.9019 -1.4345 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 3.3889 3.3610 -0.3541 34 1 4.9416 5.1869 0.1006 35 1 7.4697 4.0165 1.3827 36 1 5.4093 6.8938 0.0744 37 1 6.1070 9.2485 0.0908 38 1 9.4853 13.6485 1.3569 39 1 9.8287 8.1473 1.8969 40 1 9.1397 5.7898 1.8975 41 1 4.1654 1.2005 -2.1461 42 1 5.9775 -0.5443 -1.8197 43 1 5.5352 -0.6695 -0.0336 44 1 3.1842 -1.3842 -0.6653 45 1 3.6255 -1.2590 -2.4515 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267667056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:15 Heat of formation + Delta-G solvation = -95.481279 kcal Electronic energy + Delta-G solvation = -28088.853474 eV Core-core repulsion = 23845.051948 eV Total energy + Delta-G solvation = -4243.801526 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.99814 -40.89104 -40.51889 -38.60556 -38.20894 -37.72797 -35.18150 -34.73587 -33.98979 -31.96749 -30.64516 -29.44624 -27.94754 -27.40497 -24.64081 -23.70503 -23.36863 -23.01007 -22.31763 -21.34715 -20.85416 -19.88648 -18.94088 -18.83415 -18.32949 -17.70335 -17.55560 -17.07008 -16.47729 -16.35634 -16.07237 -15.94901 -15.68794 -15.60406 -15.20277 -15.00519 -14.73361 -14.61094 -14.35555 -14.11098 -13.93570 -13.59452 -13.32232 -13.16181 -13.07424 -12.80368 -12.67210 -12.57304 -12.38426 -12.23190 -12.14299 -12.03273 -11.85821 -11.44905 -11.21385 -11.10983 -11.07563 -10.95533 -10.58288 -10.28950 -9.89053 -8.68959 -8.51807 -6.18172 -0.26143 0.58863 0.92590 1.11243 1.32760 1.36053 1.47686 1.51938 2.15176 2.16051 2.34139 2.86503 2.95088 3.17928 3.42456 3.47544 3.65641 3.78592 3.88510 3.94969 4.03348 4.09083 4.18793 4.29431 4.30653 4.33949 4.35407 4.46151 4.49942 4.66043 4.72772 4.86493 4.94599 5.00319 5.02521 5.10434 5.19679 5.21766 5.23284 5.28333 5.31375 5.35249 5.58077 5.63900 5.81331 5.97336 6.10731 6.41716 6.51717 6.92297 7.15761 7.69411 8.69967 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.027114 B = 0.001613 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.440278 B =17359.390929 C =18036.202143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.346 6.346 3 C 0.470 3.530 4 O -0.526 6.526 5 C 0.189 3.811 6 H 0.121 0.879 7 N -0.709 5.709 8 C 0.563 3.437 9 O -0.573 6.573 10 C -0.250 4.250 11 C 0.025 3.975 12 C -0.172 4.172 13 C -0.038 4.038 14 C -0.209 4.209 15 C 0.130 3.870 16 O -0.220 6.220 17 C -0.418 4.418 18 H 0.107 0.893 19 C -0.018 4.018 20 N -0.914 5.914 21 Si 1.019 2.981 22 H -0.256 1.256 23 H -0.272 1.272 24 H -0.257 1.257 25 C -0.249 4.249 26 C -0.037 4.037 27 C -0.185 4.185 28 C -0.163 4.163 29 C -0.148 4.148 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.136 0.864 33 H 0.417 0.583 34 H 0.147 0.853 35 H 0.131 0.869 36 H 0.157 0.843 37 H 0.121 0.879 38 H 0.275 0.725 39 H 0.126 0.874 40 H 0.147 0.853 41 H 0.113 0.887 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.112 0.888 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.764 -28.128 -4.037 31.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.261 6.261 3 C 0.313 3.687 4 O -0.415 6.415 5 C 0.082 3.918 6 H 0.138 0.862 7 N -0.363 5.363 8 C 0.355 3.645 9 O -0.455 6.455 10 C -0.270 4.270 11 C 0.005 3.995 12 C -0.173 4.173 13 C -0.056 4.056 14 C -0.228 4.228 15 C 0.078 3.922 16 O -0.125 6.125 17 C -0.494 4.494 18 H 0.124 0.876 19 C -0.217 4.217 20 N -0.550 5.550 21 Si 0.838 3.162 22 H -0.180 1.180 23 H -0.196 1.196 24 H -0.181 1.181 25 C -0.268 4.268 26 C -0.055 4.055 27 C -0.204 4.204 28 C -0.200 4.200 29 C -0.185 4.185 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.154 0.846 33 H 0.255 0.745 34 H 0.164 0.836 35 H 0.149 0.851 36 H 0.175 0.825 37 H 0.139 0.861 38 H 0.084 0.916 39 H 0.144 0.856 40 H 0.165 0.835 41 H 0.131 0.869 42 H 0.119 0.881 43 H 0.111 0.889 44 H 0.130 0.870 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.625 -28.006 -3.837 31.380 hybrid contribution 0.176 1.334 0.150 1.354 sum -13.449 -26.672 -3.688 30.098 Atomic orbital electron populations 1.23631 0.74305 1.06046 1.02643 1.86507 1.25117 1.31309 1.83165 1.23609 0.91495 0.82002 0.71564 1.90680 1.67248 1.37170 1.46392 1.19863 0.86400 0.84438 1.01076 0.86183 1.45565 1.18747 1.07861 1.64102 1.18392 0.80546 0.89491 0.76116 1.90785 1.53572 1.52760 1.48342 1.22653 0.99735 0.94241 1.10407 1.22187 0.94623 0.93149 0.89554 1.18781 0.96392 0.93026 1.09097 1.21287 0.99282 0.90184 0.94850 1.20413 0.95136 0.97807 1.09422 1.20191 0.93992 0.84748 0.93271 1.83884 1.39300 1.21843 1.67456 1.21875 0.96032 0.94173 1.37289 0.87626 1.26621 1.03691 0.93818 0.97594 1.70146 1.39630 1.00664 1.44602 0.84643 0.75025 0.77931 0.78642 1.18036 1.19643 1.18141 1.21214 1.01930 0.93709 1.09995 1.21331 0.95137 0.94731 0.94323 1.22499 1.07076 0.93258 0.97607 1.23046 0.92636 1.01105 1.03246 1.23167 0.97774 0.93219 1.04357 0.92074 0.91667 0.84634 0.74519 0.83560 0.85083 0.82538 0.86111 0.91605 0.85637 0.83487 0.86850 0.88128 0.88909 0.86997 0.86981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 113.37 1.20 1.41 16 2 O -0.35 -4.55 8.51 -51.44 -0.44 -4.99 16 3 C 0.47 8.17 7.30 71.23 0.52 8.69 16 4 O -0.53 -11.58 15.59 21.97 0.34 -11.24 16 5 C 0.19 3.30 2.72 44.24 0.12 3.42 16 6 H 0.12 2.26 7.33 -2.39 -0.02 2.24 16 7 N -0.71 -13.72 4.95 -450.49 -2.23 -15.95 16 8 C 0.56 13.48 7.70 86.33 0.66 14.15 16 9 O -0.57 -16.85 15.89 -4.44 -0.07 -16.92 16 10 C -0.25 -5.72 9.41 23.62 0.22 -5.50 16 11 C 0.02 0.64 9.45 23.82 0.23 0.86 16 12 C -0.17 -5.31 5.87 -20.13 -0.12 -5.43 16 13 C -0.04 -1.21 9.40 22.55 0.21 -1.00 16 14 C -0.21 -8.42 9.97 22.35 0.22 -8.20 16 15 C 0.13 6.22 6.66 22.72 0.15 6.37 16 16 O -0.22 -12.78 9.74 -20.22 -0.20 -12.98 16 17 C -0.42 -23.54 9.48 67.93 0.64 -22.90 16 18 H 0.11 5.40 5.18 -2.91 -0.02 5.39 16 19 C -0.02 -1.02 5.49 84.86 0.47 -0.55 16 20 N -0.91 -54.55 13.67 21.62 0.30 -54.25 16 21 Si 1.02 41.47 29.55 68.60 2.03 43.49 16 22 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 23 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 24 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 25 C -0.25 -10.39 9.14 22.34 0.20 -10.19 16 26 C -0.04 -1.24 9.78 22.55 0.22 -1.02 16 27 C -0.18 -2.77 5.41 -10.79 -0.06 -2.83 16 28 C -0.16 -2.37 10.18 30.62 0.31 -2.06 16 29 C -0.15 -1.61 9.45 30.62 0.29 -1.32 16 30 H 0.06 0.56 8.13 -2.38 -0.02 0.54 16 31 H 0.06 0.55 8.13 -2.39 -0.02 0.53 16 32 H 0.14 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.42 7.13 7.77 -92.71 -0.72 6.41 16 34 H 0.15 2.73 6.06 -2.91 -0.02 2.72 16 35 H 0.13 3.32 7.52 -2.91 -0.02 3.30 16 36 H 0.16 3.71 6.16 -2.91 -0.02 3.69 16 37 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 38 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 39 H 0.13 5.27 5.62 -2.91 -0.02 5.25 16 40 H 0.15 3.91 8.06 -2.91 -0.02 3.88 16 41 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 42 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.09 1.52 8.05 -2.39 -0.02 1.51 16 44 H 0.11 1.12 6.85 -2.39 -0.02 1.11 16 45 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -72.93 391.01 5.55 -67.38 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: 0.32 Total: 31.53 kcal Atomic # 6 Polarization: -31.56 SS G_CDS: 5.50 Total: -26.07 kcal Atomic # 7 Polarization: -68.27 SS G_CDS: -1.93 Total: -70.20 kcal Atomic # 8 Polarization: -45.77 SS G_CDS: -0.36 Total: -46.13 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Total: -72.93 5.55 -67.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267667056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.105 kcal (2) G-P(sol) polarization free energy of solvation -72.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds