Wall clock time and date at job start Wed Apr 1 2020 03:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35899 * 117.00220 * 2 1 4 4 C 1.38758 * 120.05480 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.94355 * 180.02562 * 4 3 2 6 6 C 1.38276 * 120.05718 * 0.02562 * 5 4 3 7 7 C 1.38244 * 120.11264 * 359.95521 * 6 5 4 8 8 C 1.50700 * 119.97604 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.47599 * 186.51491 * 8 7 6 10 10 O 1.42898 * 109.47256 * 306.52012 * 8 7 6 11 11 C 1.50703 * 109.46832 * 66.51360 * 8 7 6 12 12 O 1.21285 * 120.00317 * 257.93804 * 11 8 7 13 13 N 1.34779 * 119.99917 * 77.94438 * 11 8 7 14 14 C 1.46500 * 120.00099 * 354.72837 * 13 11 8 15 15 C 1.50700 * 109.47417 * 263.85906 * 14 13 11 16 16 H 1.07999 * 119.99857 * 5.44270 * 15 14 13 17 17 C 1.37874 * 119.99701 * 185.44275 * 15 14 13 18 18 N 1.31524 * 119.99764 * 184.38907 * 17 15 14 19 19 Si 1.86799 * 120.00454 * 4.38691 * 17 15 14 20 20 H 1.48501 * 109.46990 * 89.99897 * 19 17 15 21 21 H 1.48503 * 109.47060 * 210.00035 * 19 17 15 22 22 H 1.48494 * 109.47013 * 330.00096 * 19 17 15 23 23 C 1.46502 * 120.00206 * 174.73453 * 13 11 8 24 24 C 1.50704 * 109.47076 * 89.99467 * 23 13 11 25 25 C 1.34510 * 125.78773 * 89.99926 * 24 23 13 26 26 C 1.41385 * 106.84261 * 179.79095 * 25 24 23 27 27 C 1.34517 * 106.83608 * 0.37692 * 26 25 24 28 28 O 1.34300 * 108.42104 * 359.62290 * 27 26 25 29 29 C 1.38170 * 120.05783 * 0.27888 * 7 6 5 30 30 H 1.08990 * 109.47226 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46870 * 300.00134 * 1 2 3 32 32 H 1.09000 * 109.46976 * 59.99835 * 1 2 3 33 33 H 1.08004 * 120.02597 * 0.02562 * 4 3 2 34 34 H 1.08002 * 119.96552 * 179.97438 * 5 4 3 35 35 H 1.08000 * 119.94643 * 179.97438 * 6 5 4 36 36 H 0.96697 * 114.00408 * 59.99284 * 10 8 7 37 37 H 1.09006 * 109.46862 * 23.85545 * 14 13 11 38 38 H 1.08999 * 109.47322 * 143.85105 * 14 13 11 39 39 H 0.96994 * 119.99862 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.46680 * 330.00140 * 23 13 11 41 41 H 1.08990 * 109.47041 * 209.99676 * 23 13 11 42 42 H 1.08003 * 126.57749 * 0.02562 * 25 24 23 43 43 H 1.07994 * 126.58397 * 180.23669 * 26 25 24 44 44 H 1.08002 * 125.78814 * 179.88661 * 27 26 25 45 45 H 1.08000 * 120.03183 * 179.73894 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9210 3.6048 0.0000 6 6 3.3019 3.6758 -0.0016 7 6 4.0560 2.5171 -0.0017 8 6 5.5608 2.5981 -0.0041 9 1 5.9784 1.5980 -0.1204 10 8 5.9918 3.4234 -1.0882 11 6 6.0339 3.1917 1.2979 12 8 6.3811 4.3528 1.3443 13 7 6.0712 2.4321 2.4106 14 6 5.5445 1.0654 2.3826 15 6 4.1263 1.0629 2.8922 16 1 3.6337 1.9960 3.1225 17 6 3.4578 -0.1305 3.0645 18 7 2.1933 -0.1296 3.4263 19 14 4.3478 -1.7487 2.7840 20 1 4.9688 -2.1990 4.0556 21 1 3.3785 -2.7722 2.3168 22 1 5.4035 -1.5613 1.7567 23 6 6.6384 2.9732 3.6482 24 6 5.5515 3.6449 4.4473 25 6 4.7750 3.0528 5.3724 26 6 3.9018 4.0466 5.8712 27 6 4.1913 5.1846 5.2151 28 8 5.1934 4.9361 4.3562 29 6 3.4312 1.2848 -0.0061 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 0.2128 2.3204 0.0014 34 1 1.3340 4.5114 0.0000 35 1 3.7923 4.6381 -0.0024 36 1 5.6573 4.3298 -1.0496 37 1 5.5635 0.6896 1.3595 38 1 6.1594 0.4259 3.0160 39 1 1.7230 -0.9692 3.5479 40 1 7.4129 3.7006 3.4052 41 1 7.0719 2.1628 4.2340 42 1 4.8140 2.0178 5.6784 43 1 3.1458 3.9164 6.6314 44 1 3.7036 6.1376 5.3580 45 1 4.0207 0.3799 -0.0105 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305750143.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:36 Heat of formation + Delta-G solvation = -58.499998 kcal Electronic energy + Delta-G solvation = -32454.866633 eV Core-core repulsion = 28212.668736 eV Total energy + Delta-G solvation = -4242.197897 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.86991 -40.11161 -39.07252 -37.12056 -35.92792 -35.10900 -32.56037 -32.29030 -31.40086 -30.18282 -29.66116 -27.92848 -27.13790 -26.51750 -24.65551 -22.57427 -22.10458 -21.06840 -21.03673 -20.07278 -18.91533 -17.77025 -17.21904 -17.00436 -16.61531 -16.15922 -15.69928 -15.38715 -15.29463 -15.12019 -14.97980 -14.62381 -14.21741 -13.93187 -13.42733 -13.33670 -13.11525 -12.79132 -12.64965 -12.31355 -12.22318 -12.15486 -12.01312 -11.94660 -11.76058 -11.48993 -11.29852 -11.21347 -11.01943 -10.75132 -10.70026 -10.51217 -10.31097 -10.10738 -9.61267 -9.17924 -9.13854 -8.62744 -8.19640 -8.06673 -7.70436 -7.51709 -6.10991 -4.07834 1.83982 2.11567 2.30775 3.06384 3.19057 3.25602 3.27066 3.32482 3.67374 3.77416 3.92457 4.31346 4.33252 4.80252 5.06021 5.14198 5.18517 5.28305 5.29696 5.43758 5.52685 5.56034 5.58139 5.63495 5.68084 5.79773 5.86646 5.88512 5.90418 6.08847 6.16714 6.34405 6.45820 6.53211 6.58680 6.65347 6.71617 6.88249 6.96213 7.05445 7.12941 7.19942 7.29795 7.48096 7.73902 7.80891 8.00835 8.03348 8.44501 8.68040 9.02111 9.48467 11.00719 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008927 B = 0.006174 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3135.798913 B = 4534.259659 C = 5361.819037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.308 6.308 3 C 0.152 3.848 4 C -0.199 4.199 5 C -0.088 4.088 6 C -0.145 4.145 7 C -0.070 4.070 8 C 0.140 3.860 9 H 0.126 0.874 10 O -0.539 6.539 11 C 0.499 3.501 12 O -0.552 6.552 13 N -0.581 5.581 14 C 0.203 3.797 15 C -0.523 4.523 16 H 0.084 0.916 17 C 0.092 3.908 18 N -0.875 5.875 19 Si 0.853 3.147 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.267 1.267 23 C 0.204 3.796 24 C -0.024 4.024 25 C -0.164 4.164 26 C -0.212 4.212 27 C -0.057 4.057 28 O -0.171 6.171 29 C -0.081 4.081 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.380 0.620 37 H 0.033 0.967 38 H 0.027 0.973 39 H 0.261 0.739 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.148 0.852 43 H 0.139 0.861 44 H 0.191 0.809 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.205 3.523 -3.080 4.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.221 6.221 3 C 0.107 3.893 4 C -0.218 4.218 5 C -0.106 4.106 6 C -0.163 4.163 7 C -0.071 4.071 8 C 0.077 3.923 9 H 0.144 0.856 10 O -0.344 6.344 11 C 0.287 3.713 12 O -0.431 6.431 13 N -0.313 5.313 14 C 0.083 3.917 15 C -0.561 4.561 16 H 0.102 0.898 17 C -0.112 4.112 18 N -0.511 5.511 19 Si 0.680 3.320 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.192 1.192 23 C 0.080 3.920 24 C -0.075 4.075 25 C -0.184 4.184 26 C -0.231 4.231 27 C -0.126 4.126 28 O -0.066 6.066 29 C -0.100 4.100 30 H 0.108 0.892 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.229 0.771 37 H 0.050 0.950 38 H 0.045 0.955 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.122 0.878 42 H 0.165 0.835 43 H 0.157 0.843 44 H 0.208 0.792 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.757 3.444 -3.409 4.904 hybrid contribution -0.797 -0.651 0.665 1.226 sum -0.040 2.793 -2.744 3.915 Atomic orbital electron populations 1.22890 0.79385 1.03042 1.00698 1.86063 1.20549 1.27009 1.88432 1.18663 0.91947 0.83827 0.94869 1.21059 0.99351 0.92592 1.08808 1.20602 0.94121 0.96584 0.99290 1.20576 0.93961 0.97227 1.04563 1.19491 0.93683 0.93315 1.00628 1.20640 0.91012 0.95628 0.84979 0.85615 1.86559 1.75996 1.26677 1.45199 1.21155 0.77638 0.86350 0.86206 1.90640 1.49975 1.16514 1.85975 1.48037 1.59053 1.16160 1.08001 1.20050 0.96243 0.77580 0.97842 1.21154 0.95026 0.95257 1.44629 0.89799 1.24654 0.94417 0.97694 0.94478 1.69860 1.08742 1.26427 1.46112 0.87250 0.80214 0.85635 0.78880 1.20451 1.20968 1.19198 1.19618 0.90867 0.96967 0.84509 1.22692 1.02474 0.81711 1.00667 1.21524 0.97133 1.00256 0.99457 1.21750 1.03444 0.93340 1.04572 1.23802 0.93591 1.00501 0.94660 1.84030 1.43266 1.28046 1.51289 1.19883 0.91408 0.97034 1.01691 0.89179 0.92441 0.93741 0.86388 0.86714 0.86923 0.77090 0.94973 0.95458 0.92862 0.89539 0.87841 0.83450 0.84330 0.79194 0.85899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 9.81 101.05 0.99 1.52 16 2 O -0.31 -6.01 10.50 -19.42 -0.20 -6.21 16 3 C 0.15 3.02 6.69 -39.21 -0.26 2.76 16 4 C -0.20 -3.59 9.04 -39.43 -0.36 -3.95 16 5 C -0.09 -1.52 10.04 -39.61 -0.40 -1.92 16 6 C -0.14 -2.64 9.06 -39.57 -0.36 -3.00 16 7 C -0.07 -1.33 4.22 -104.64 -0.44 -1.77 16 8 C 0.14 2.54 2.87 -29.03 -0.08 2.46 16 9 H 0.13 2.18 6.38 -51.93 -0.33 1.84 16 10 O -0.54 -9.20 13.06 -54.47 -0.71 -9.91 16 11 C 0.50 10.00 6.72 -10.98 -0.07 9.93 16 12 O -0.55 -12.01 15.95 -13.69 -0.22 -12.22 16 13 N -0.58 -11.45 2.45 -176.43 -0.43 -11.88 16 14 C 0.20 4.21 3.76 -5.19 -0.02 4.19 16 15 C -0.52 -12.50 6.71 -34.44 -0.23 -12.73 16 16 H 0.08 2.37 7.31 -52.49 -0.38 1.99 16 17 C 0.09 2.29 5.46 -17.82 -0.10 2.19 16 18 N -0.87 -23.41 13.96 55.43 0.77 -22.63 16 19 Si 0.85 19.12 27.35 -169.99 -4.65 14.47 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.27 -5.64 6.76 56.52 0.38 -5.26 16 23 C 0.20 3.66 5.93 -5.19 -0.03 3.63 16 24 C -0.02 -0.48 6.47 -35.62 -0.23 -0.71 16 25 C -0.16 -3.21 9.56 -39.70 -0.38 -3.59 16 26 C -0.21 -3.81 10.91 -39.70 -0.43 -4.24 16 27 C -0.06 -0.98 12.09 29.42 0.36 -0.63 16 28 O -0.17 -3.41 10.65 5.73 0.06 -3.35 16 29 C -0.08 -1.62 6.93 -39.43 -0.27 -1.90 16 30 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.06 0.90 7.66 -51.93 -0.40 0.51 16 32 H 0.04 0.55 7.66 -51.93 -0.40 0.15 16 33 H 0.12 1.85 6.30 -52.48 -0.33 1.52 16 34 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.11 1.92 7.42 -52.49 -0.39 1.53 16 36 H 0.38 5.73 7.64 45.56 0.35 6.08 16 37 H 0.03 0.66 3.98 -51.93 -0.21 0.45 16 38 H 0.03 0.55 6.97 -51.93 -0.36 0.19 16 39 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 40 H 0.09 1.49 7.50 -51.93 -0.39 1.10 16 41 H 0.10 1.58 7.95 -51.93 -0.41 1.17 16 42 H 0.15 2.93 8.06 -52.48 -0.42 2.51 16 43 H 0.14 2.21 8.06 -52.49 -0.42 1.78 16 44 H 0.19 2.45 8.06 -52.49 -0.42 2.03 16 45 H 0.12 2.45 7.13 -52.49 -0.37 2.08 16 LS Contribution 373.74 15.07 5.63 5.63 Total: -1.00 -30.84 373.74 -6.97 -37.81 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -4.90 Total: 16.07 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -2.32 Total: -7.77 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.34 Total: -34.51 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -1.07 Total: -31.69 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.65 Total: 14.47 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.84 -6.97 -37.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305750143.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.693 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds