Wall clock time and date at job start Wed Apr 1 2020 03:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35899 * 117.00220 * 2 1 4 4 C 1.38758 * 120.05480 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.94355 * 180.02562 * 4 3 2 6 6 C 1.38276 * 120.05718 * 0.02562 * 5 4 3 7 7 C 1.38244 * 120.11264 * 359.95521 * 6 5 4 8 8 C 1.50700 * 119.97604 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.47599 * 186.51491 * 8 7 6 10 10 O 1.42898 * 109.47256 * 306.52012 * 8 7 6 11 11 C 1.50703 * 109.46832 * 66.51360 * 8 7 6 12 12 O 1.21285 * 120.00317 * 257.93804 * 11 8 7 13 13 N 1.34779 * 119.99917 * 77.94438 * 11 8 7 14 14 C 1.46500 * 120.00099 * 354.72837 * 13 11 8 15 15 C 1.50700 * 109.47417 * 263.85906 * 14 13 11 16 16 H 1.07999 * 119.99857 * 5.44270 * 15 14 13 17 17 C 1.37874 * 119.99701 * 185.44275 * 15 14 13 18 18 N 1.31524 * 119.99764 * 184.38907 * 17 15 14 19 19 Si 1.86799 * 120.00454 * 4.38691 * 17 15 14 20 20 H 1.48501 * 109.46990 * 89.99897 * 19 17 15 21 21 H 1.48503 * 109.47060 * 210.00035 * 19 17 15 22 22 H 1.48494 * 109.47013 * 330.00096 * 19 17 15 23 23 C 1.46502 * 120.00206 * 174.73453 * 13 11 8 24 24 C 1.50704 * 109.47076 * 89.99467 * 23 13 11 25 25 C 1.34510 * 125.78773 * 89.99926 * 24 23 13 26 26 C 1.41385 * 106.84261 * 179.79095 * 25 24 23 27 27 C 1.34517 * 106.83608 * 0.37692 * 26 25 24 28 28 O 1.34300 * 108.42104 * 359.62290 * 27 26 25 29 29 C 1.38170 * 120.05783 * 0.27888 * 7 6 5 30 30 H 1.08990 * 109.47226 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46870 * 300.00134 * 1 2 3 32 32 H 1.09000 * 109.46976 * 59.99835 * 1 2 3 33 33 H 1.08004 * 120.02597 * 0.02562 * 4 3 2 34 34 H 1.08002 * 119.96552 * 179.97438 * 5 4 3 35 35 H 1.08000 * 119.94643 * 179.97438 * 6 5 4 36 36 H 0.96697 * 114.00408 * 59.99284 * 10 8 7 37 37 H 1.09006 * 109.46862 * 23.85545 * 14 13 11 38 38 H 1.08999 * 109.47322 * 143.85105 * 14 13 11 39 39 H 0.96994 * 119.99862 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.46680 * 330.00140 * 23 13 11 41 41 H 1.08990 * 109.47041 * 209.99676 * 23 13 11 42 42 H 1.08003 * 126.57749 * 0.02562 * 25 24 23 43 43 H 1.07994 * 126.58397 * 180.23669 * 26 25 24 44 44 H 1.08002 * 125.78814 * 179.88661 * 27 26 25 45 45 H 1.08000 * 120.03183 * 179.73894 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9210 3.6048 0.0000 6 6 3.3019 3.6758 -0.0016 7 6 4.0560 2.5171 -0.0017 8 6 5.5608 2.5981 -0.0041 9 1 5.9784 1.5980 -0.1204 10 8 5.9918 3.4234 -1.0882 11 6 6.0339 3.1917 1.2979 12 8 6.3811 4.3528 1.3443 13 7 6.0712 2.4321 2.4106 14 6 5.5445 1.0654 2.3826 15 6 4.1263 1.0629 2.8922 16 1 3.6337 1.9960 3.1225 17 6 3.4578 -0.1305 3.0645 18 7 2.1933 -0.1296 3.4263 19 14 4.3478 -1.7487 2.7840 20 1 4.9688 -2.1990 4.0556 21 1 3.3785 -2.7722 2.3168 22 1 5.4035 -1.5613 1.7567 23 6 6.6384 2.9732 3.6482 24 6 5.5515 3.6449 4.4473 25 6 4.7750 3.0528 5.3724 26 6 3.9018 4.0466 5.8712 27 6 4.1913 5.1846 5.2151 28 8 5.1934 4.9361 4.3562 29 6 3.4312 1.2848 -0.0061 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 0.2128 2.3204 0.0014 34 1 1.3340 4.5114 0.0000 35 1 3.7923 4.6381 -0.0024 36 1 5.6573 4.3298 -1.0496 37 1 5.5635 0.6896 1.3595 38 1 6.1594 0.4259 3.0160 39 1 1.7230 -0.9692 3.5479 40 1 7.4129 3.7006 3.4052 41 1 7.0719 2.1628 4.2340 42 1 4.8140 2.0178 5.6784 43 1 3.1458 3.9164 6.6314 44 1 3.7036 6.1376 5.3580 45 1 4.0207 0.3799 -0.0105 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305750143.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:35 Heat of formation + Delta-G solvation = -77.780215 kcal Electronic energy + Delta-G solvation = -32455.702686 eV Core-core repulsion = 28212.668736 eV Total energy + Delta-G solvation = -4243.033950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.32759 -41.59743 -40.52913 -38.55529 -37.40373 -36.65253 -34.39857 -33.77981 -32.84830 -31.64457 -31.08212 -29.66895 -28.52142 -27.84454 -26.10782 -24.35129 -23.53026 -22.52018 -22.49532 -21.52002 -20.41364 -19.17535 -18.97672 -18.51549 -18.19726 -17.68290 -17.12347 -16.81835 -16.78464 -16.49006 -16.43566 -16.11219 -15.94657 -15.34820 -14.92882 -14.85150 -14.56659 -14.33068 -14.18028 -13.91418 -13.69859 -13.60871 -13.43768 -13.34784 -13.29110 -12.98169 -12.77002 -12.66566 -12.58501 -12.42468 -12.15518 -12.02999 -11.84056 -11.56843 -11.47446 -10.72822 -10.64522 -10.51563 -9.66855 -9.64925 -9.19388 -8.95830 -8.04082 -6.01931 0.40007 0.67611 0.86098 1.41377 1.46896 1.50729 1.52645 1.80873 2.28755 2.31067 2.47031 2.56023 2.88683 3.28913 3.43063 3.58717 3.70562 3.92484 3.94129 4.13690 4.17977 4.19998 4.27386 4.35393 4.39391 4.45511 4.45697 4.52417 4.64913 4.70403 4.73350 4.80626 4.88288 5.05033 5.14380 5.16477 5.32822 5.45215 5.53277 5.54141 5.61898 5.63897 5.73973 5.91016 6.26547 6.39171 6.47240 6.61389 6.64590 6.98415 7.12686 7.56033 9.09930 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008927 B = 0.006174 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3135.798913 B = 4534.259659 C = 5361.819037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.332 6.332 3 C 0.136 3.864 4 C -0.207 4.207 5 C -0.088 4.088 6 C -0.157 4.157 7 C -0.074 4.074 8 C 0.145 3.855 9 H 0.135 0.865 10 O -0.538 6.538 11 C 0.496 3.504 12 O -0.571 6.571 13 N -0.582 5.582 14 C 0.206 3.794 15 C -0.495 4.495 16 H 0.039 0.961 17 C 0.055 3.945 18 N -0.913 5.913 19 Si 0.896 3.104 20 H -0.276 1.276 21 H -0.297 1.297 22 H -0.243 1.243 23 C 0.198 3.802 24 C -0.038 4.038 25 C -0.179 4.179 26 C -0.230 4.230 27 C -0.049 4.049 28 O -0.190 6.190 29 C -0.102 4.102 30 H 0.109 0.891 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.139 0.861 34 H 0.144 0.856 35 H 0.122 0.878 36 H 0.389 0.611 37 H 0.043 0.957 38 H 0.044 0.956 39 H 0.256 0.744 40 H 0.093 0.907 41 H 0.129 0.871 42 H 0.137 0.863 43 H 0.155 0.845 44 H 0.233 0.767 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.556 3.938 -3.585 5.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.246 6.246 3 C 0.091 3.909 4 C -0.226 4.226 5 C -0.106 4.106 6 C -0.175 4.175 7 C -0.075 4.075 8 C 0.083 3.917 9 H 0.153 0.847 10 O -0.344 6.344 11 C 0.284 3.716 12 O -0.452 6.452 13 N -0.312 5.312 14 C 0.085 3.915 15 C -0.534 4.534 16 H 0.057 0.943 17 C -0.146 4.146 18 N -0.552 5.552 19 Si 0.722 3.278 20 H -0.201 1.201 21 H -0.224 1.224 22 H -0.166 1.166 23 C 0.075 3.925 24 C -0.089 4.089 25 C -0.199 4.199 26 C -0.249 4.249 27 C -0.117 4.117 28 O -0.086 6.086 29 C -0.121 4.121 30 H 0.127 0.873 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.157 0.843 34 H 0.162 0.838 35 H 0.140 0.860 36 H 0.239 0.761 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.111 0.889 41 H 0.147 0.853 42 H 0.155 0.845 43 H 0.173 0.827 44 H 0.249 0.751 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.134 3.868 -3.918 5.621 hybrid contribution -0.999 -0.684 0.845 1.476 sum 0.136 3.184 -3.072 4.427 Atomic orbital electron populations 1.23125 0.77373 1.04635 1.01341 1.86016 1.22778 1.27273 1.88498 1.18912 0.92278 0.84543 0.95183 1.21365 1.00516 0.92341 1.08359 1.20984 0.94155 0.97550 0.97887 1.20808 0.94584 0.97428 1.04676 1.19587 0.94068 0.93314 1.00562 1.20590 0.90665 0.96095 0.84352 0.84742 1.86545 1.75953 1.27290 1.44613 1.21484 0.77157 0.86112 0.86802 1.90622 1.50897 1.17267 1.86381 1.48045 1.58792 1.15757 1.08633 1.19962 0.94558 0.78597 0.98420 1.20930 0.96082 0.93054 1.43319 0.94310 1.25116 0.94706 1.00183 0.94607 1.69987 1.10257 1.26630 1.48338 0.86529 0.79667 0.82163 0.79422 1.20142 1.22379 1.16628 1.19893 0.90543 0.97946 0.84107 1.22913 1.03083 0.81831 1.01050 1.21598 0.98010 1.00199 1.00121 1.22041 1.03962 0.93410 1.05510 1.24603 0.92246 1.01849 0.92955 1.84027 1.44209 1.28254 1.52141 1.19955 0.91829 0.97153 1.03115 0.87272 0.93717 0.90997 0.84347 0.83811 0.86003 0.76101 0.93944 0.93823 0.93422 0.88908 0.85340 0.84469 0.82685 0.75125 0.86564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 9.81 113.37 1.11 1.98 16 2 O -0.33 -12.93 10.50 -92.42 -0.97 -13.90 16 3 C 0.14 5.37 6.69 22.51 0.15 5.52 16 4 C -0.21 -7.27 9.04 22.37 0.20 -7.07 16 5 C -0.09 -2.92 10.04 22.25 0.22 -2.70 16 6 C -0.16 -5.54 9.06 22.28 0.20 -5.34 16 7 C -0.07 -2.77 4.22 -19.88 -0.08 -2.85 16 8 C 0.15 5.13 2.87 29.10 0.08 5.21 16 9 H 0.14 4.46 6.38 -2.39 -0.02 4.45 16 10 O -0.54 -17.60 13.06 -130.58 -1.71 -19.30 16 11 C 0.50 19.36 6.72 87.66 0.59 19.95 16 12 O -0.57 -24.27 15.95 15.35 0.24 -24.03 16 13 N -0.58 -22.28 2.45 -830.49 -2.04 -24.31 16 14 C 0.21 8.24 3.76 85.63 0.32 8.57 16 15 C -0.50 -23.66 6.71 25.60 0.17 -23.49 16 16 H 0.04 2.22 7.31 -2.91 -0.02 2.20 16 17 C 0.05 2.72 5.46 84.65 0.46 3.18 16 18 N -0.91 -49.70 13.96 21.45 0.30 -49.40 16 19 Si 0.90 38.64 27.35 68.60 1.88 40.52 16 20 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 21 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.24 -9.44 6.76 99.48 0.67 -8.77 16 23 C 0.20 6.89 5.93 85.63 0.51 7.40 16 24 C -0.04 -1.48 6.47 24.83 0.16 -1.32 16 25 C -0.18 -7.04 9.56 22.19 0.21 -6.83 16 26 C -0.23 -8.13 10.91 22.19 0.24 -7.89 16 27 C -0.05 -1.61 12.09 66.97 0.81 -0.80 16 28 O -0.19 -7.43 10.65 -2.43 -0.03 -7.46 16 29 C -0.10 -4.04 6.93 22.37 0.16 -3.88 16 30 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.04 1.39 7.66 -2.39 -0.02 1.38 16 32 H 0.07 1.66 7.66 -2.39 -0.02 1.64 16 33 H 0.14 4.14 6.30 -2.91 -0.02 4.12 16 34 H 0.14 3.84 8.06 -2.91 -0.02 3.81 16 35 H 0.12 4.01 7.42 -2.91 -0.02 3.99 16 36 H 0.39 11.20 7.64 -74.06 -0.57 10.63 16 37 H 0.04 1.66 3.98 -2.38 -0.01 1.65 16 38 H 0.04 1.64 6.97 -2.39 -0.02 1.62 16 39 H 0.26 13.61 8.31 -92.71 -0.77 12.84 16 40 H 0.09 3.10 7.50 -2.39 -0.02 3.09 16 41 H 0.13 3.72 7.95 -2.39 -0.02 3.70 16 42 H 0.14 5.57 8.06 -2.91 -0.02 5.55 16 43 H 0.16 4.80 8.06 -2.91 -0.02 4.78 16 44 H 0.23 5.28 8.06 -2.91 -0.02 5.25 16 45 H 0.12 4.63 7.13 -2.91 -0.02 4.61 16 Total: -1.00 -66.44 373.74 3.64 -62.80 By element: Atomic # 1 Polarization: 45.00 SS G_CDS: 0.44 Total: 45.44 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: 5.52 Total: -10.37 kcal Atomic # 7 Polarization: -71.97 SS G_CDS: -1.74 Total: -73.71 kcal Atomic # 8 Polarization: -62.23 SS G_CDS: -2.46 Total: -64.69 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 1.88 Total: 40.52 kcal Total: -66.44 3.64 -62.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305750143.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.979 kcal (2) G-P(sol) polarization free energy of solvation -66.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds