Wall clock time and date at job start Wed Apr 1 2020 03:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34234 * 116.99945 * 2 1 4 4 O 1.20830 * 119.99821 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00138 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.95462 * 22.24658 * 5 3 2 7 7 C 1.54092 * 109.96309 * 260.99144 * 5 3 2 8 8 H 1.09001 * 112.45652 * 335.81527 * 7 5 3 9 9 C 1.53948 * 108.63948 * 101.46343 * 7 5 3 10 10 C 1.54202 * 106.78934 * 110.34320 * 9 7 5 11 11 C 1.54893 * 104.22925 * 336.61918 * 10 9 7 12 12 C 1.54605 * 102.74231 * 38.17344 * 11 10 9 13 13 H 1.09006 * 112.39015 * 83.65269 * 12 11 10 14 14 C 1.53415 * 109.34053 * 209.97861 * 12 11 10 15 15 N 1.46611 * 108.08086 * 96.48949 * 14 12 11 16 16 S 1.65598 * 125.31996 * 178.16950 * 15 14 12 17 17 O 1.42107 * 104.27231 * 326.69721 * 16 15 14 18 18 O 1.42095 * 104.28080 * 198.84580 * 16 15 14 19 19 C 1.81397 * 104.45386 * 82.76979 * 16 15 14 20 20 C 1.53002 * 109.47343 * 183.49969 * 19 16 15 21 21 C 1.52998 * 109.46914 * 180.02562 * 20 19 16 22 22 C 1.50700 * 109.46910 * 180.02562 * 21 20 19 23 23 H 1.07998 * 119.99949 * 359.71976 * 22 21 20 24 24 C 1.37877 * 120.00266 * 179.97438 * 22 21 20 25 25 N 1.31513 * 119.99708 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00135 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.47083 * 90.00437 * 26 24 22 28 28 H 1.48501 * 109.47339 * 209.99992 * 26 24 22 29 29 H 1.48495 * 109.47467 * 330.00283 * 26 24 22 30 30 H 1.08996 * 109.47254 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47289 * 300.00171 * 1 2 3 32 32 H 1.09000 * 109.47026 * 60.00304 * 1 2 3 33 33 H 1.08998 * 109.99871 * 229.67776 * 9 7 5 34 34 H 1.09003 * 109.99084 * 351.01455 * 9 7 5 35 35 H 1.09002 * 110.48453 * 217.93256 * 10 9 7 36 36 H 1.09004 * 110.59383 * 95.35990 * 10 9 7 37 37 H 1.09003 * 110.75362 * 279.86358 * 11 10 9 38 38 H 1.08992 * 110.75744 * 156.49060 * 11 10 9 39 39 H 1.08999 * 109.88395 * 336.75307 * 14 12 11 40 40 H 1.09001 * 109.62415 * 216.07394 * 14 12 11 41 41 H 1.08997 * 109.47020 * 63.49442 * 19 16 15 42 42 H 1.09003 * 109.46949 * 303.49934 * 19 16 15 43 43 H 1.09001 * 109.46608 * 59.99795 * 20 19 16 44 44 H 1.08994 * 109.47165 * 300.00150 * 20 19 16 45 45 H 1.08991 * 109.47327 * 60.00019 * 21 20 19 46 46 H 1.09003 * 109.47119 * 299.99807 * 21 20 19 47 47 H 0.97000 * 120.00341 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9873 0.3475 -0.3888 7 6 4.0804 1.5287 1.4297 8 1 3.3329 2.0081 2.0619 9 6 4.5914 0.1984 2.0121 10 6 6.1252 0.3181 2.1169 11 6 6.4945 1.4036 1.0755 12 6 5.3350 2.4170 1.2135 13 1 5.4942 3.1215 2.0299 14 6 5.0999 3.1069 -0.1364 15 7 4.0081 2.4076 -0.8208 16 16 3.3772 2.8266 -2.2935 17 8 3.4809 4.2435 -2.3286 18 8 2.1104 2.1838 -2.3278 19 6 4.5051 2.0757 -3.4995 20 6 4.0737 2.4678 -4.9141 21 6 5.0247 1.8338 -5.9313 22 6 4.6003 2.2205 -7.3246 23 1 3.7358 2.8512 -7.4703 24 6 5.3124 1.7648 -8.4137 25 7 6.3625 0.9930 -8.2366 26 14 4.7858 2.2435 -10.1408 27 1 5.4678 3.5024 -10.5351 28 1 5.1562 1.1622 -11.0889 29 1 3.3152 2.4466 -10.1716 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 4.1620 0.0347 3.0004 34 1 4.3263 -0.6250 1.3490 35 1 6.6000 -0.6300 1.8641 36 1 6.4176 0.6349 3.1181 37 1 6.5213 0.9818 0.0708 38 1 7.4472 1.8704 1.3253 39 1 6.0054 3.0570 -0.7410 40 1 4.8240 4.1486 0.0280 41 1 4.4755 0.9909 -3.3981 42 1 5.5197 2.4300 -3.3177 43 1 4.1034 3.5527 -5.0154 44 1 3.0591 2.1135 -5.0959 45 1 4.9947 0.7491 -5.8298 46 1 6.0395 2.1878 -5.7497 47 1 6.8633 0.6721 -9.0027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331430110.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:40 Heat of formation + Delta-G solvation = -191.549481 kcal Electronic energy + Delta-G solvation = -29882.926777 eV Core-core repulsion = 25770.403373 eV Total energy + Delta-G solvation = -4112.523405 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.03902 -40.38706 -38.36972 -37.54106 -37.13652 -36.52546 -35.81771 -34.20829 -32.24886 -30.03443 -29.66702 -28.89976 -27.25435 -25.68475 -24.32366 -22.75203 -22.14345 -21.52996 -20.75992 -20.13010 -19.33390 -18.60048 -18.53530 -17.45444 -17.34919 -17.25018 -17.08191 -16.49331 -16.37397 -15.93942 -15.73571 -15.20730 -14.83909 -14.57263 -14.53522 -14.33664 -14.23089 -14.11679 -13.64956 -13.51358 -13.28359 -13.21775 -13.10484 -13.05682 -12.90930 -12.78139 -12.67168 -12.44078 -12.21843 -12.04773 -11.87322 -11.81971 -11.79045 -11.74624 -11.57135 -11.45674 -11.40894 -11.27860 -11.08260 -10.59027 -10.14554 -8.24415 -6.35414 -0.99562 1.07173 1.39198 1.39764 1.43493 1.51229 1.72113 2.38492 2.72518 2.82679 3.09089 3.24391 3.37372 3.60695 3.64911 3.78157 3.80616 4.03262 4.23423 4.26909 4.28721 4.31311 4.34514 4.46268 4.49141 4.52360 4.57359 4.62581 4.68261 4.78225 4.83220 4.87523 4.96948 4.97219 5.00933 5.17050 5.20878 5.31632 5.35853 5.38898 5.42015 5.43911 5.59138 5.61769 5.76670 6.17365 6.68223 6.79183 7.33809 8.87026 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013795 B = 0.003046 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.183964 B = 9189.274287 C =10008.924328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.448 3.552 4 O -0.525 6.525 5 C 0.161 3.839 6 H 0.131 0.869 7 C -0.081 4.081 8 H 0.091 0.909 9 C -0.117 4.117 10 C -0.118 4.118 11 C -0.123 4.123 12 C -0.083 4.083 13 H 0.124 0.876 14 C 0.109 3.891 15 N -0.995 5.995 16 S 2.621 3.379 17 O -0.982 6.982 18 O -0.979 6.979 19 C -0.600 4.600 20 C -0.106 4.106 21 C 0.034 3.966 22 C -0.555 4.555 23 H 0.057 0.943 24 C 0.006 3.994 25 N -0.927 5.927 26 Si 0.962 3.038 27 H -0.271 1.271 28 H -0.278 1.278 29 H -0.267 1.267 30 H 0.136 0.864 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.067 0.933 41 H 0.149 0.851 42 H 0.152 0.848 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.006 0.994 46 H 0.007 0.993 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.496 -4.346 26.712 27.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.272 6.272 3 C 0.290 3.710 4 O -0.413 6.413 5 C 0.054 3.946 6 H 0.149 0.851 7 C -0.102 4.102 8 H 0.109 0.891 9 C -0.155 4.155 10 C -0.156 4.156 11 C -0.161 4.161 12 C -0.103 4.103 13 H 0.142 0.858 14 C -0.015 4.015 15 N -0.834 5.834 16 S 2.721 3.279 17 O -0.973 6.973 18 O -0.969 6.969 19 C -0.732 4.732 20 C -0.145 4.145 21 C -0.005 4.005 22 C -0.593 4.593 23 H 0.076 0.924 24 C -0.193 4.193 25 N -0.567 5.567 26 Si 0.786 3.214 27 H -0.196 1.196 28 H -0.203 1.203 29 H -0.191 1.191 30 H 0.154 0.846 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.085 0.915 41 H 0.167 0.833 42 H 0.171 0.829 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.024 0.976 46 H 0.026 0.974 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.440 -3.588 26.427 26.709 hybrid contribution -0.272 0.102 -1.539 1.566 sum -1.713 -3.486 24.889 25.190 Atomic orbital electron populations 1.23498 0.75103 1.05632 1.02049 1.86417 1.24764 1.32323 1.83714 1.24364 0.93026 0.81791 0.71791 1.90639 1.67751 1.37567 1.45315 1.21557 0.85333 0.92116 0.95638 0.85120 1.22744 0.98054 0.98881 0.90474 0.89105 1.22287 0.96831 0.94353 1.02022 1.22357 0.94069 0.99352 0.99779 1.22690 0.97589 0.95582 1.00218 1.22785 0.94425 0.97277 0.95772 0.85839 1.21948 0.88462 0.96325 0.94770 1.58233 1.50060 1.41279 1.33839 1.04601 0.75079 0.74224 0.74033 1.93515 1.87371 1.30106 1.86263 1.93535 1.39651 1.77633 1.86087 1.30495 1.17325 1.14801 1.10548 1.21330 1.00701 1.01125 0.91389 1.18945 0.93995 0.95194 0.92327 1.21712 1.13277 1.31473 0.92867 0.92438 1.25897 0.94905 0.94781 1.03716 1.70056 1.19268 1.35170 1.32178 0.85496 0.78915 0.78184 0.78789 1.19636 1.20327 1.19137 0.84552 0.91505 0.93570 0.89933 0.90400 0.90527 0.90267 0.91012 0.89389 0.88574 0.91483 0.83279 0.82948 0.91676 0.91940 0.97588 0.97430 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.56 113.37 1.20 1.83 16 2 O -0.36 -8.96 10.57 -51.45 -0.54 -9.51 16 3 C 0.45 12.83 5.06 71.24 0.36 13.19 16 4 O -0.52 -19.07 14.75 29.19 0.43 -18.64 16 5 C 0.16 3.43 3.08 44.58 0.14 3.56 16 6 H 0.13 2.13 7.27 -2.38 -0.02 2.11 16 7 C -0.08 -1.18 3.47 -9.34 -0.03 -1.21 16 8 H 0.09 1.45 7.93 -2.39 -0.02 1.43 16 9 C -0.12 -1.09 6.34 31.32 0.20 -0.90 16 10 C -0.12 -0.83 6.82 31.65 0.22 -0.62 16 11 C -0.12 -1.07 6.03 31.79 0.19 -0.88 16 12 C -0.08 -0.98 3.83 -9.34 -0.04 -1.01 16 13 H 0.12 1.02 8.14 -2.38 -0.02 1.00 16 14 C 0.11 1.96 6.38 86.50 0.55 2.51 16 15 N -1.00 -24.51 3.26 -494.00 -1.61 -26.12 16 16 S 2.62 87.16 5.40 -56.49 -0.31 86.86 16 17 O -0.98 -38.68 17.70 -127.65 -2.26 -40.94 16 18 O -0.98 -38.51 14.11 -118.94 -1.68 -40.19 16 19 C -0.60 -18.80 6.18 71.98 0.44 -18.35 16 20 C -0.11 -4.46 5.16 30.59 0.16 -4.30 16 21 C 0.03 1.75 4.97 29.85 0.15 1.90 16 22 C -0.56 -31.87 9.11 25.60 0.23 -31.63 16 23 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 24 C 0.01 0.32 5.46 84.65 0.46 0.78 16 25 N -0.93 -55.23 13.29 21.45 0.28 -54.94 16 26 Si 0.96 44.33 29.54 68.60 2.03 46.35 16 27 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 28 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 29 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 30 H 0.14 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.07 1.27 8.13 -2.39 -0.02 1.25 16 32 H 0.05 1.18 8.13 -2.39 -0.02 1.16 16 33 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.08 0.74 7.19 -2.39 -0.02 0.72 16 35 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.07 0.72 7.89 -2.39 -0.02 0.70 16 38 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.10 1.35 7.73 -2.39 -0.02 1.33 16 40 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.15 4.05 8.14 -2.39 -0.02 4.03 16 42 H 0.15 4.02 8.14 -2.39 -0.02 4.00 16 43 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 44 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 45 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 46 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 47 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -82.07 388.55 1.52 -80.55 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.95 Total: 11.71 kcal Atomic # 6 Polarization: -39.36 SS G_CDS: 4.23 Total: -35.13 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -1.33 Total: -81.07 kcal Atomic # 8 Polarization: -105.23 SS G_CDS: -4.05 Total: -109.28 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: 87.16 SS G_CDS: -0.31 Total: 86.86 kcal Total: -82.07 1.52 -80.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331430110.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.999 kcal (2) G-P(sol) polarization free energy of solvation -82.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds