Wall clock time and date at job start Wed Apr 1 2020 03:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34233 * 117.00241 * 2 1 4 4 O 1.20830 * 119.99649 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00446 * 180.27669 * 3 2 1 6 6 H 1.09001 * 109.81052 * 43.45407 * 5 3 2 7 7 C 1.54087 * 109.80809 * 282.61423 * 5 3 2 8 8 H 1.08998 * 113.35807 * 96.22783 * 7 5 3 9 9 C 1.54530 * 108.50919 * 329.35973 * 7 5 3 10 10 C 1.54021 * 104.95738 * 215.72205 * 9 7 5 11 11 C 1.53685 * 106.69039 * 23.19242 * 10 9 7 12 12 C 1.53685 * 107.19816 * 358.37383 * 11 10 9 13 13 H 1.08997 * 112.94418 * 215.98511 * 12 11 10 14 14 C 1.54425 * 109.35299 * 88.38960 * 12 11 10 15 15 N 1.46881 * 109.81699 * 164.37060 * 5 3 2 16 16 S 1.65596 * 125.61586 * 297.48764 * 15 5 3 17 17 O 1.42106 * 104.27532 * 20.15241 * 16 15 5 18 18 O 1.42096 * 104.28242 * 148.01438 * 16 15 5 19 19 C 1.81405 * 104.44840 * 264.08776 * 16 15 5 20 20 C 1.52998 * 109.47193 * 184.14956 * 19 16 15 21 21 C 1.52998 * 109.47055 * 180.02562 * 20 19 16 22 22 C 1.50701 * 109.47395 * 179.97438 * 21 20 19 23 23 H 1.08000 * 119.99409 * 359.97438 * 22 21 20 24 24 C 1.37871 * 120.00078 * 179.97438 * 22 21 20 25 25 N 1.31522 * 119.99902 * 179.97438 * 24 22 21 26 26 Si 1.86791 * 120.00434 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.46830 * 89.99857 * 26 24 22 28 28 H 1.48497 * 109.47732 * 209.99904 * 26 24 22 29 29 H 1.48506 * 109.47357 * 330.00345 * 26 24 22 30 30 H 1.09002 * 109.47219 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47772 * 300.00824 * 1 2 3 32 32 H 1.09004 * 109.46781 * 60.00704 * 1 2 3 33 33 H 1.09003 * 110.34681 * 334.59348 * 9 7 5 34 34 H 1.09007 * 110.34616 * 96.75067 * 9 7 5 35 35 H 1.09000 * 110.01591 * 142.49701 * 10 9 7 36 36 H 1.09000 * 110.01823 * 263.88179 * 10 9 7 37 37 H 1.09002 * 109.89411 * 117.76509 * 11 10 9 38 38 H 1.09002 * 109.89634 * 238.80830 * 11 10 9 39 39 H 1.09000 * 110.27992 * 333.06726 * 14 12 11 40 40 H 1.09007 * 110.27263 * 95.05099 * 14 12 11 41 41 H 1.09003 * 109.46920 * 304.14910 * 19 16 15 42 42 H 1.09002 * 109.46936 * 64.14611 * 19 16 15 43 43 H 1.09003 * 109.47150 * 299.99813 * 20 19 16 44 44 H 1.08996 * 109.46969 * 59.99487 * 20 19 16 45 45 H 1.09003 * 109.46984 * 299.99909 * 21 20 19 46 46 H 1.08996 * 109.47357 * 59.99443 * 21 20 19 47 47 H 0.96996 * 120.00464 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0063 6 1 3.9711 0.5524 -0.7149 7 6 4.1103 0.9830 1.4054 8 1 4.4143 -0.0543 1.5455 9 6 3.0682 1.4613 2.4414 10 6 3.8989 2.0008 3.6209 11 6 5.2778 2.3753 3.0549 12 6 5.2677 2.0182 1.5602 13 1 6.2285 1.6449 1.2060 14 6 4.7339 3.2199 0.7505 15 7 3.9922 2.6307 -0.3774 16 16 3.6892 3.3742 -1.8258 17 8 2.5894 2.6543 -2.3658 18 8 3.5722 4.7512 -1.4952 19 6 5.1860 3.0801 -2.8074 20 6 5.0706 3.8130 -4.1455 21 6 6.3328 3.5644 -4.9737 22 6 6.2189 4.2857 -6.2919 23 1 5.3344 4.8633 -6.5167 24 6 7.2437 4.2082 -7.2110 25 7 7.1441 4.8374 -8.3616 26 14 8.7737 3.2098 -6.8220 27 1 8.5841 1.8122 -7.2868 28 1 9.9440 3.8071 -7.5139 29 1 9.0094 3.2160 -5.3557 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8898 32 1 -0.3633 0.5138 -0.8901 33 1 2.4503 2.2538 2.0193 34 1 2.4451 0.6275 2.7648 35 1 3.4174 2.8823 4.0440 36 1 4.0059 1.2308 4.3850 37 1 5.4521 3.4441 3.1797 38 1 6.0556 1.8103 3.5686 39 1 4.0677 3.8243 1.3661 40 1 5.5623 3.8263 0.3840 41 1 6.0554 3.4504 -2.2641 42 1 5.2983 2.0109 -2.9872 43 1 4.2012 3.4426 -4.6888 44 1 4.9582 4.8821 -3.9656 45 1 7.2024 3.9344 -4.4306 46 1 6.4447 2.4952 -5.1535 47 1 7.8651 4.7832 -9.0081 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331430113.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:43 Heat of formation + Delta-G solvation = -160.061295 kcal Electronic energy + Delta-G solvation = -29918.918426 eV Core-core repulsion = 25807.760451 eV Total energy + Delta-G solvation = -4111.157974 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.40640 -39.53993 -37.00906 -36.53535 -35.77002 -35.04232 -34.82998 -32.22814 -31.46356 -29.30221 -28.39408 -28.13750 -26.76418 -24.01791 -23.44908 -21.88685 -20.55032 -20.30492 -20.16184 -18.96245 -17.91124 -17.76460 -16.94755 -16.69847 -16.63781 -16.29256 -15.82899 -15.80090 -15.06933 -14.53122 -14.23560 -14.16748 -13.98548 -13.83312 -13.48812 -13.26216 -13.01904 -12.92649 -12.39606 -12.35427 -12.16237 -11.99147 -11.98381 -11.88457 -11.82366 -11.61229 -11.55717 -11.32703 -11.23989 -11.10655 -11.00233 -10.96274 -10.89976 -10.72178 -10.50642 -10.11697 -9.89934 -9.77585 -9.31045 -9.18523 -8.59790 -6.09252 -4.08776 0.25106 2.08343 2.36599 2.71698 3.25591 3.33049 3.34941 3.66478 3.88288 3.97883 4.16865 4.27980 4.39264 4.58833 4.67697 4.70117 4.77400 4.91563 4.94877 4.95506 4.98394 5.04420 5.05878 5.09561 5.14470 5.24177 5.25983 5.36508 5.38149 5.52762 5.60280 5.62749 5.68350 5.72703 5.76567 5.91754 5.95988 6.00001 6.14364 6.23347 6.24998 6.64258 7.10333 7.24424 7.63406 7.69644 8.46722 8.95146 9.51551 11.04084 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015459 B = 0.003055 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.814690 B = 9161.796791 C = 9971.600431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.358 6.358 3 C 0.456 3.544 4 O -0.487 6.487 5 C 0.167 3.833 6 H 0.112 0.888 7 C -0.082 4.082 8 H 0.117 0.883 9 C -0.139 4.139 10 C -0.119 4.119 11 C -0.116 4.116 12 C -0.098 4.098 13 H 0.103 0.897 14 C 0.125 3.875 15 N -0.996 5.996 16 S 2.610 3.390 17 O -0.947 6.947 18 O -0.945 6.945 19 C -0.616 4.616 20 C -0.098 4.098 21 C -0.003 4.003 22 C -0.528 4.528 23 H 0.075 0.925 24 C 0.067 3.933 25 N -0.900 5.900 26 Si 0.881 3.119 27 H -0.276 1.276 28 H -0.286 1.286 29 H -0.266 1.266 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.021 0.979 46 H 0.016 0.984 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.656 -12.403 27.215 30.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.274 6.274 3 C 0.296 3.704 4 O -0.373 6.373 5 C 0.058 3.942 6 H 0.130 0.870 7 C -0.102 4.102 8 H 0.135 0.865 9 C -0.177 4.177 10 C -0.157 4.157 11 C -0.154 4.154 12 C -0.118 4.118 13 H 0.121 0.879 14 C 0.000 4.000 15 N -0.831 5.831 16 S 2.708 3.292 17 O -0.938 6.938 18 O -0.935 6.935 19 C -0.747 4.747 20 C -0.137 4.137 21 C -0.042 4.042 22 C -0.566 4.566 23 H 0.093 0.907 24 C -0.134 4.134 25 N -0.539 5.539 26 Si 0.708 3.292 27 H -0.202 1.202 28 H -0.212 1.212 29 H -0.190 1.190 30 H 0.119 0.881 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.039 0.961 46 H 0.034 0.966 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.654 -11.525 26.766 29.892 hybrid contribution 1.162 -0.708 -0.148 1.369 sum -5.491 -12.233 26.619 29.805 Atomic orbital electron populations 1.23266 0.76254 1.03526 1.02764 1.86449 1.23499 1.33149 1.84331 1.23908 0.92141 0.81898 0.72481 1.90681 1.66575 1.36267 1.43737 1.20689 0.87121 0.86048 1.00314 0.87009 1.23037 0.95755 1.00893 0.90504 0.86464 1.22639 0.97745 1.01446 0.95835 1.22022 0.95192 1.00954 0.97511 1.21988 0.97552 1.02064 0.93797 1.23001 0.98419 0.94451 0.95894 0.87856 1.22074 0.95251 0.95397 0.87295 1.58804 1.69234 1.24529 1.30529 1.05301 0.77008 0.74105 0.72793 1.93578 1.48578 1.73580 1.78014 1.93576 1.86171 1.31948 1.81847 1.30679 1.20592 1.11042 1.12388 1.21329 1.02883 0.99242 0.90279 1.19527 0.92229 0.96920 0.95523 1.21132 1.05289 1.31312 0.98822 0.90722 1.25027 0.98355 0.95248 0.94792 1.69913 1.33370 1.43060 1.07524 0.86769 0.82946 0.80562 0.78944 1.20197 1.21239 1.19041 0.88132 0.92104 0.91506 0.90220 0.91072 0.91537 0.91541 0.90952 0.91089 0.90544 0.89847 0.85314 0.85298 0.91083 0.90834 0.96121 0.96574 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.06 10.57 -39.26 -0.41 -4.47 16 3 C 0.46 6.00 4.32 36.00 0.16 6.15 16 4 O -0.49 -8.06 14.01 -24.86 -0.35 -8.41 16 5 C 0.17 1.73 3.29 -68.31 -0.23 1.51 16 6 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 7 C -0.08 -0.58 4.02 -87.62 -0.35 -0.93 16 8 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 9 C -0.14 -1.08 4.71 -25.39 -0.12 -1.20 16 10 C -0.12 -0.71 6.79 -25.84 -0.18 -0.89 16 11 C -0.12 -0.62 6.08 -26.02 -0.16 -0.78 16 12 C -0.10 -0.63 4.10 -87.89 -0.36 -0.99 16 13 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 14 C 0.12 1.17 5.80 -2.86 -0.02 1.15 16 15 N -1.00 -11.99 2.95 -106.25 -0.31 -12.31 16 16 S 2.61 41.53 5.36 -107.50 -0.58 40.96 16 17 O -0.95 -17.78 15.52 -64.95 -1.01 -18.78 16 18 O -0.94 -17.87 17.70 -57.54 -1.02 -18.89 16 19 C -0.62 -9.11 6.18 37.16 0.23 -8.88 16 20 C -0.10 -1.95 5.16 -26.73 -0.14 -2.08 16 21 C 0.00 -0.08 4.04 -27.88 -0.11 -0.19 16 22 C -0.53 -15.09 9.66 -34.44 -0.33 -15.43 16 23 H 0.07 2.30 7.99 -52.49 -0.42 1.88 16 24 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 25 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 26 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 32 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 33 H 0.08 0.85 5.85 -51.93 -0.30 0.54 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.38 7.86 -51.93 -0.41 -0.02 16 38 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 0.77 7.57 -51.93 -0.39 0.38 16 40 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 41 H 0.13 1.59 8.14 -51.92 -0.42 1.17 16 42 H 0.13 1.61 8.14 -51.92 -0.42 1.19 16 43 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 45 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 46 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 47 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 382.93 15.07 5.77 5.77 Total: -1.00 -38.05 382.93 -10.24 -48.29 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -7.80 Total: -2.52 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -0.64 Total: -19.30 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.46 Total: -39.31 kcal Atomic # 8 Polarization: -47.76 SS G_CDS: -2.79 Total: -50.55 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Atomic # 16 Polarization: 41.53 SS G_CDS: -0.58 Total: 40.96 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.05 -10.24 -48.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331430113.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.770 kcal (2) G-P(sol) polarization free energy of solvation -38.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds