Wall clock time and date at job start Wed Apr 1 2020 03:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34233 * 117.00241 * 2 1 4 4 O 1.20830 * 119.99649 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00446 * 180.27669 * 3 2 1 6 6 H 1.09001 * 109.81052 * 43.45407 * 5 3 2 7 7 C 1.54087 * 109.80809 * 282.61423 * 5 3 2 8 8 H 1.08998 * 113.35807 * 96.22783 * 7 5 3 9 9 C 1.54530 * 108.50919 * 329.35973 * 7 5 3 10 10 C 1.54021 * 104.95738 * 215.72205 * 9 7 5 11 11 C 1.53685 * 106.69039 * 23.19242 * 10 9 7 12 12 C 1.53685 * 107.19816 * 358.37383 * 11 10 9 13 13 H 1.08997 * 112.94418 * 215.98511 * 12 11 10 14 14 C 1.54425 * 109.35299 * 88.38960 * 12 11 10 15 15 N 1.46881 * 109.81699 * 164.37060 * 5 3 2 16 16 S 1.65596 * 125.61586 * 297.48764 * 15 5 3 17 17 O 1.42106 * 104.27532 * 20.15241 * 16 15 5 18 18 O 1.42096 * 104.28242 * 148.01438 * 16 15 5 19 19 C 1.81405 * 104.44840 * 264.08776 * 16 15 5 20 20 C 1.52998 * 109.47193 * 184.14956 * 19 16 15 21 21 C 1.52998 * 109.47055 * 180.02562 * 20 19 16 22 22 C 1.50701 * 109.47395 * 179.97438 * 21 20 19 23 23 H 1.08000 * 119.99409 * 359.97438 * 22 21 20 24 24 C 1.37871 * 120.00078 * 179.97438 * 22 21 20 25 25 N 1.31522 * 119.99902 * 179.97438 * 24 22 21 26 26 Si 1.86791 * 120.00434 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.46830 * 89.99857 * 26 24 22 28 28 H 1.48497 * 109.47732 * 209.99904 * 26 24 22 29 29 H 1.48506 * 109.47357 * 330.00345 * 26 24 22 30 30 H 1.09002 * 109.47219 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47772 * 300.00824 * 1 2 3 32 32 H 1.09004 * 109.46781 * 60.00704 * 1 2 3 33 33 H 1.09003 * 110.34681 * 334.59348 * 9 7 5 34 34 H 1.09007 * 110.34616 * 96.75067 * 9 7 5 35 35 H 1.09000 * 110.01591 * 142.49701 * 10 9 7 36 36 H 1.09000 * 110.01823 * 263.88179 * 10 9 7 37 37 H 1.09002 * 109.89411 * 117.76509 * 11 10 9 38 38 H 1.09002 * 109.89634 * 238.80830 * 11 10 9 39 39 H 1.09000 * 110.27992 * 333.06726 * 14 12 11 40 40 H 1.09007 * 110.27263 * 95.05099 * 14 12 11 41 41 H 1.09003 * 109.46920 * 304.14910 * 19 16 15 42 42 H 1.09002 * 109.46936 * 64.14611 * 19 16 15 43 43 H 1.09003 * 109.47150 * 299.99813 * 20 19 16 44 44 H 1.08996 * 109.46969 * 59.99487 * 20 19 16 45 45 H 1.09003 * 109.46984 * 299.99909 * 21 20 19 46 46 H 1.08996 * 109.47357 * 59.99443 * 21 20 19 47 47 H 0.96996 * 120.00464 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0063 6 1 3.9711 0.5524 -0.7149 7 6 4.1103 0.9830 1.4054 8 1 4.4143 -0.0543 1.5455 9 6 3.0682 1.4613 2.4414 10 6 3.8989 2.0008 3.6209 11 6 5.2778 2.3753 3.0549 12 6 5.2677 2.0182 1.5602 13 1 6.2285 1.6449 1.2060 14 6 4.7339 3.2199 0.7505 15 7 3.9922 2.6307 -0.3774 16 16 3.6892 3.3742 -1.8258 17 8 2.5894 2.6543 -2.3658 18 8 3.5722 4.7512 -1.4952 19 6 5.1860 3.0801 -2.8074 20 6 5.0706 3.8130 -4.1455 21 6 6.3328 3.5644 -4.9737 22 6 6.2189 4.2857 -6.2919 23 1 5.3344 4.8633 -6.5167 24 6 7.2437 4.2082 -7.2110 25 7 7.1441 4.8374 -8.3616 26 14 8.7737 3.2098 -6.8220 27 1 8.5841 1.8122 -7.2868 28 1 9.9440 3.8071 -7.5139 29 1 9.0094 3.2160 -5.3557 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8898 32 1 -0.3633 0.5138 -0.8901 33 1 2.4503 2.2538 2.0193 34 1 2.4451 0.6275 2.7648 35 1 3.4174 2.8823 4.0440 36 1 4.0059 1.2308 4.3850 37 1 5.4521 3.4441 3.1797 38 1 6.0556 1.8103 3.5686 39 1 4.0677 3.8243 1.3661 40 1 5.5623 3.8263 0.3840 41 1 6.0554 3.4504 -2.2641 42 1 5.2983 2.0109 -2.9872 43 1 4.2012 3.4426 -4.6888 44 1 4.9582 4.8821 -3.9656 45 1 7.2024 3.9344 -4.4306 46 1 6.4447 2.4952 -5.1535 47 1 7.8651 4.7832 -9.0081 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331430113.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:42 Heat of formation + Delta-G solvation = -186.944613 kcal Electronic energy + Delta-G solvation = -29920.084174 eV Core-core repulsion = 25807.760451 eV Total energy + Delta-G solvation = -4112.323723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.21109 -40.30080 -38.33097 -37.52094 -37.11404 -36.54797 -35.76847 -34.27353 -32.14063 -30.21229 -29.90790 -28.83945 -27.40578 -25.50326 -24.55972 -22.75317 -22.13063 -21.07272 -20.70280 -20.05778 -19.04735 -18.93539 -18.64195 -17.60125 -17.57528 -17.27595 -17.05036 -16.79958 -16.22623 -15.99441 -15.64654 -14.90838 -14.89489 -14.75265 -14.56327 -14.24094 -14.17422 -14.08897 -13.72781 -13.61059 -13.29319 -13.27565 -13.25300 -13.18039 -12.87275 -12.71016 -12.59309 -12.56621 -12.12821 -11.87179 -11.85918 -11.81840 -11.80632 -11.66533 -11.59111 -11.43924 -11.40980 -11.36462 -11.12980 -10.77775 -10.18859 -8.30107 -6.37066 -0.96708 1.14022 1.37935 1.41238 1.42801 1.52921 1.76090 2.37242 2.79306 2.85117 3.05013 3.21563 3.36096 3.61023 3.66178 3.83482 3.84510 4.06850 4.12694 4.24653 4.28069 4.28467 4.30373 4.38506 4.47593 4.51094 4.54960 4.63489 4.66019 4.74176 4.77130 4.77951 4.88925 4.94469 5.02095 5.13338 5.17702 5.22011 5.29996 5.32948 5.37602 5.43530 5.45284 5.54848 5.61349 6.24109 6.69481 6.71217 7.27741 8.87153 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015459 B = 0.003055 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.814690 B = 9161.796791 C = 9971.600431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.449 3.551 4 O -0.534 6.534 5 C 0.156 3.844 6 H 0.142 0.858 7 C -0.071 4.071 8 H 0.155 0.845 9 C -0.143 4.143 10 C -0.117 4.117 11 C -0.113 4.113 12 C -0.084 4.084 13 H 0.134 0.866 14 C 0.110 3.890 15 N -0.993 5.993 16 S 2.616 3.384 17 O -0.986 6.986 18 O -0.988 6.988 19 C -0.598 4.598 20 C -0.105 4.105 21 C -0.002 4.002 22 C -0.547 4.547 23 H 0.025 0.975 24 C -0.001 4.001 25 N -0.954 5.954 26 Si 0.958 3.042 27 H -0.263 1.263 28 H -0.286 1.286 29 H -0.234 1.234 30 H 0.138 0.862 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.057 0.943 40 H 0.098 0.902 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.037 0.963 46 H 0.035 0.965 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.324 -15.887 30.001 34.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.271 6.271 3 C 0.291 3.709 4 O -0.423 6.423 5 C 0.047 3.953 6 H 0.159 0.841 7 C -0.091 4.091 8 H 0.172 0.828 9 C -0.181 4.181 10 C -0.155 4.155 11 C -0.151 4.151 12 C -0.104 4.104 13 H 0.152 0.848 14 C -0.014 4.014 15 N -0.830 5.830 16 S 2.716 3.284 17 O -0.976 6.976 18 O -0.979 6.979 19 C -0.730 4.730 20 C -0.145 4.145 21 C -0.041 4.041 22 C -0.585 4.585 23 H 0.044 0.956 24 C -0.198 4.198 25 N -0.595 5.595 26 Si 0.780 3.220 27 H -0.188 1.188 28 H -0.212 1.212 29 H -0.156 1.156 30 H 0.156 0.844 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.113 0.887 39 H 0.075 0.925 40 H 0.116 0.884 41 H 0.181 0.819 42 H 0.181 0.819 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.056 0.944 46 H 0.053 0.947 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.357 -15.014 29.579 33.341 hybrid contribution -0.047 0.431 -1.021 1.109 sum -3.404 -14.583 28.558 32.246 Atomic orbital electron populations 1.23502 0.75337 1.05709 1.01904 1.86447 1.24500 1.32318 1.83822 1.24679 0.93526 0.81600 0.71051 1.90663 1.67814 1.37780 1.46033 1.21233 0.85234 0.85494 1.03306 0.84071 1.23230 0.95298 1.02980 0.87579 0.82787 1.22618 0.98084 1.00507 0.96863 1.22025 0.95339 1.00947 0.97171 1.22009 0.97506 1.02395 0.93225 1.23069 0.99128 0.92373 0.95823 0.84788 1.22401 0.95125 0.97102 0.86738 1.58390 1.69435 1.25501 1.29665 1.04716 0.77038 0.73102 0.73512 1.93524 1.50863 1.73939 1.79272 1.93517 1.86941 1.34626 1.82795 1.30492 1.20767 1.12604 1.09145 1.21206 1.01086 0.99423 0.92753 1.19491 0.94233 0.97127 0.93205 1.21555 1.03836 1.31370 1.01782 0.95615 1.26174 1.02694 0.96619 0.94272 1.70096 1.34990 1.45252 1.09119 0.85545 0.77205 0.78660 0.80568 1.18817 1.21185 1.15638 0.84371 0.91896 0.93551 0.93940 0.90684 0.92714 0.89841 0.91203 0.88733 0.92463 0.88366 0.81874 0.81914 0.92313 0.92145 0.94449 0.94660 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.71 16 2 O -0.36 -7.74 10.57 -51.44 -0.54 -8.28 16 3 C 0.45 11.73 4.32 71.23 0.31 12.04 16 4 O -0.53 -18.61 14.01 27.79 0.39 -18.22 16 5 C 0.16 2.86 3.29 44.54 0.15 3.01 16 6 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 7 C -0.07 -0.75 4.02 -8.85 -0.04 -0.78 16 8 H 0.15 0.57 8.14 -2.39 -0.02 0.55 16 9 C -0.14 -2.01 4.71 31.46 0.15 -1.86 16 10 C -0.12 -1.14 6.79 31.17 0.21 -0.93 16 11 C -0.11 -0.81 6.08 31.06 0.19 -0.62 16 12 C -0.08 -0.72 4.10 -9.02 -0.04 -0.76 16 13 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 14 C 0.11 1.85 5.80 86.71 0.50 2.36 16 15 N -0.99 -22.42 2.95 -490.08 -1.45 -23.87 16 16 S 2.62 82.81 5.36 -56.49 -0.30 82.51 16 17 O -0.99 -37.97 15.52 -120.56 -1.87 -39.84 16 18 O -0.99 -38.69 17.70 -127.65 -2.26 -40.95 16 19 C -0.60 -15.95 6.18 71.98 0.44 -15.51 16 20 C -0.11 -4.12 5.16 30.59 0.16 -3.97 16 21 C 0.00 -0.09 4.04 29.85 0.12 0.03 16 22 C -0.55 -31.95 9.66 25.60 0.25 -31.70 16 23 H 0.03 1.68 7.99 -2.91 -0.02 1.65 16 24 C 0.00 -0.06 5.47 84.65 0.46 0.40 16 25 N -0.95 -60.55 13.96 21.45 0.30 -60.25 16 26 Si 0.96 42.56 27.47 68.60 1.88 44.45 16 27 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 28 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 29 H -0.23 -9.11 6.54 99.48 0.65 -8.46 16 30 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 32 H 0.05 1.02 8.13 -2.38 -0.02 1.00 16 33 H 0.04 0.93 5.85 -2.39 -0.01 0.92 16 34 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.07 0.56 7.86 -2.39 -0.02 0.54 16 38 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.06 1.17 7.57 -2.39 -0.02 1.15 16 40 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.16 3.27 8.14 -2.39 -0.02 3.25 16 42 H 0.16 3.30 8.14 -2.39 -0.02 3.28 16 43 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 45 H 0.04 1.56 7.20 -2.39 -0.02 1.54 16 46 H 0.04 1.46 7.57 -2.39 -0.02 1.44 16 47 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -89.58 382.93 1.11 -88.47 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.89 Total: 12.57 kcal Atomic # 6 Polarization: -40.64 SS G_CDS: 4.06 Total: -36.58 kcal Atomic # 7 Polarization: -82.97 SS G_CDS: -1.15 Total: -84.11 kcal Atomic # 8 Polarization: -103.01 SS G_CDS: -4.28 Total: -107.29 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 1.88 Total: 44.45 kcal Atomic # 16 Polarization: 82.81 SS G_CDS: -0.30 Total: 82.51 kcal Total: -89.58 1.11 -88.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331430113.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.472 kcal (2) G-P(sol) polarization free energy of solvation -89.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds