Wall clock time and date at job start Wed Apr 1 2020 03:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99983 * 2 1 4 4 O 1.20822 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00053 * 180.02562 * 3 2 1 6 6 H 1.08996 * 110.32357 * 42.22213 * 5 3 2 7 7 C 1.50358 * 110.35920 * 280.00225 * 5 3 2 8 8 H 1.09008 * 110.05339 * 160.09823 * 7 5 3 9 9 C 1.50998 * 125.54715 * 25.45950 * 7 5 3 10 10 C 1.56398 * 101.59705 * 203.99742 * 9 7 5 11 11 C 1.55946 * 105.78957 * 25.01971 * 10 9 7 12 12 C 1.50297 * 104.15359 * 7.53938 * 11 10 9 13 13 H 1.09003 * 109.98964 * 80.47719 * 12 11 10 14 14 C 1.50905 * 125.76273 * 214.84047 * 12 11 10 15 15 N 1.49220 * 110.36370 * 164.56533 * 5 3 2 16 16 S 1.65597 * 126.05143 * 291.77661 * 15 5 3 17 17 O 1.42107 * 104.27567 * 206.06996 * 16 15 5 18 18 O 1.42098 * 104.28443 * 333.92444 * 16 15 5 19 19 C 1.81397 * 104.44893 * 90.00320 * 16 15 5 20 20 C 1.53000 * 109.47325 * 179.97438 * 19 16 15 21 21 C 1.53001 * 109.47616 * 179.97438 * 20 19 16 22 22 C 1.50694 * 109.47462 * 179.97438 * 21 20 19 23 23 H 1.08005 * 119.99674 * 0.02562 * 22 21 20 24 24 C 1.37876 * 120.00073 * 179.97438 * 22 21 20 25 25 N 1.31514 * 119.99958 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00025 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47202 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47214 * 120.00363 * 26 24 22 29 29 H 1.48496 * 109.47358 * 240.00228 * 26 24 22 30 30 H 1.09002 * 109.47379 * 59.99613 * 1 2 3 31 31 H 1.09001 * 109.46782 * 299.99696 * 1 2 3 32 32 H 1.09004 * 109.47085 * 179.97438 * 1 2 3 33 33 H 1.09000 * 111.00593 * 322.07994 * 9 7 5 34 34 H 1.09006 * 111.00053 * 85.92396 * 9 7 5 35 35 H 1.09003 * 110.19003 * 265.94252 * 10 9 7 36 36 H 1.09001 * 110.18542 * 144.09616 * 10 9 7 37 37 H 1.09004 * 110.49419 * 248.87724 * 11 10 9 38 38 H 1.08993 * 110.61230 * 126.26251 * 11 10 9 39 39 H 1.08996 * 110.84298 * 274.09870 * 14 12 11 40 40 H 1.09005 * 110.84433 * 37.51021 * 14 12 11 41 41 H 1.09003 * 109.47049 * 299.98986 * 19 16 15 42 42 H 1.08993 * 109.47672 * 59.99411 * 19 16 15 43 43 H 1.09005 * 109.47066 * 300.00147 * 20 19 16 44 44 H 1.09008 * 109.47211 * 59.99630 * 20 19 16 45 45 H 1.08996 * 109.46882 * 300.00156 * 21 20 19 46 46 H 1.09000 * 109.46515 * 59.99829 * 21 20 19 47 47 H 0.96999 * 119.99967 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9837 0.5390 -0.6878 7 6 4.1020 1.0575 1.3874 8 1 5.1514 0.7661 1.3416 9 6 3.4071 0.2897 2.4863 10 6 4.0568 0.9136 3.7649 11 6 4.5304 2.3396 3.3476 12 6 3.9727 2.5217 1.9639 13 1 2.9222 2.8071 2.0201 14 6 4.6382 3.2723 0.8365 15 7 4.0141 2.6488 -0.3728 16 16 3.8496 3.3579 -1.8602 17 8 4.9026 4.3108 -1.9124 18 8 3.8055 2.2646 -2.7669 19 6 2.2400 4.1913 -1.7888 20 6 1.9696 4.8932 -3.1211 21 6 0.6116 5.5956 -3.0613 22 6 0.3456 6.2875 -4.3733 23 1 1.0723 6.2315 -5.1704 24 6 -0.8258 6.9912 -4.5565 25 7 -1.7108 7.0589 -3.5860 26 14 -1.1559 7.8482 -6.1831 27 1 -0.0129 7.6207 -7.1034 28 1 -2.3956 7.2996 -6.7891 29 1 -1.3219 9.3054 -5.9501 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.3320 0.4679 2.4678 34 1 3.6262 -0.7758 2.4172 35 1 4.9083 0.3133 4.0853 36 1 3.3207 0.9812 4.5660 37 1 5.6191 2.3901 3.3299 38 1 4.1253 3.0918 4.0244 39 1 4.4057 4.3359 0.8883 40 1 5.7163 3.1117 0.8468 41 1 1.4581 3.4556 -1.6002 42 1 2.2474 4.9278 -0.9855 43 1 2.7516 5.6289 -3.3095 44 1 1.9623 4.1569 -3.9249 45 1 -0.1700 4.8597 -2.8731 46 1 0.6186 6.3318 -2.2575 47 1 -2.5348 7.5543 -3.7148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331430117.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:45 Heat of formation + Delta-G solvation = -147.617311 kcal Electronic energy + Delta-G solvation = -30098.591093 eV Core-core repulsion = 25987.972730 eV Total energy + Delta-G solvation = -4110.618363 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.53528 -39.64523 -36.96585 -36.68572 -35.78920 -35.25860 -34.56537 -32.12346 -31.32878 -29.10758 -28.14647 -27.71104 -26.79492 -23.79826 -23.43123 -22.22417 -20.57465 -20.47769 -19.96284 -18.79142 -17.83890 -17.56120 -17.45212 -16.61420 -16.32456 -16.05941 -15.63267 -15.54263 -15.06476 -14.46664 -14.44739 -14.29878 -14.23233 -13.59202 -13.38489 -13.25071 -12.74246 -12.52184 -12.43157 -12.25300 -12.19659 -12.07002 -11.92477 -11.77416 -11.69527 -11.60033 -11.44675 -11.24532 -11.09903 -10.98256 -10.87887 -10.84361 -10.71617 -10.59087 -10.48097 -10.35522 -9.87313 -9.60013 -9.22748 -8.96391 -8.37077 -6.01453 -4.04405 0.39527 1.90899 2.27310 2.75757 3.31413 3.38594 3.40205 3.43895 3.99494 4.16164 4.23311 4.34029 4.45653 4.48841 4.59592 4.77278 4.83435 4.94856 4.98028 5.07727 5.11162 5.14080 5.14955 5.23692 5.30177 5.34689 5.36247 5.42496 5.45458 5.53703 5.61302 5.65794 5.73321 5.78017 5.86606 5.98537 6.00757 6.06779 6.22126 6.36039 6.59655 6.94193 7.53479 7.64173 7.74369 7.97336 8.37755 9.02181 9.59793 11.09756 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015412 B = 0.003119 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.300400 B = 8975.512550 C = 9615.577628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.353 6.353 3 C 0.443 3.557 4 O -0.488 6.488 5 C 0.181 3.819 6 H 0.125 0.875 7 C -0.112 4.112 8 H 0.104 0.896 9 C -0.104 4.104 10 C -0.120 4.120 11 C -0.102 4.102 12 C -0.127 4.127 13 H 0.089 0.911 14 C 0.143 3.857 15 N -1.003 6.003 16 S 2.604 3.396 17 O -0.953 6.953 18 O -0.959 6.959 19 C -0.599 4.599 20 C -0.106 4.106 21 C 0.033 3.967 22 C -0.524 4.524 23 H 0.058 0.942 24 C 0.057 3.943 25 N -0.895 5.895 26 Si 0.894 3.106 27 H -0.272 1.272 28 H -0.284 1.284 29 H -0.283 1.283 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.141 0.859 42 H 0.127 0.873 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.020 0.980 46 H 0.021 0.979 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.579 -17.032 17.686 27.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.268 6.268 3 C 0.283 3.717 4 O -0.374 6.374 5 C 0.073 3.927 6 H 0.142 0.858 7 C -0.132 4.132 8 H 0.122 0.878 9 C -0.142 4.142 10 C -0.158 4.158 11 C -0.141 4.141 12 C -0.147 4.147 13 H 0.107 0.893 14 C 0.019 3.981 15 N -0.839 5.839 16 S 2.703 3.297 17 O -0.944 6.944 18 O -0.950 6.950 19 C -0.732 4.732 20 C -0.145 4.145 21 C -0.005 4.005 22 C -0.563 4.563 23 H 0.076 0.924 24 C -0.144 4.144 25 N -0.534 5.534 26 Si 0.722 3.278 27 H -0.196 1.196 28 H -0.210 1.210 29 H -0.209 1.209 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.121 0.879 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.159 0.841 42 H 0.146 0.854 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.039 0.961 46 H 0.039 0.961 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.855 -16.678 16.928 26.557 hybrid contribution -1.300 0.778 -0.559 1.615 sum 10.555 -15.900 16.369 25.143 Atomic orbital electron populations 1.23356 0.75808 1.03854 1.03145 1.86481 1.23751 1.32794 1.83792 1.24269 0.92405 0.82077 0.72919 1.90703 1.66895 1.35955 1.43888 1.20003 0.86592 0.86446 0.99696 0.85765 1.22170 1.02050 0.98048 0.90945 0.87772 1.21826 0.99706 0.99582 0.93047 1.22955 1.00393 0.95247 0.97200 1.21465 1.01091 0.97099 0.94421 1.22416 1.02460 0.95116 0.94663 0.89265 1.21284 0.97252 0.97369 0.82212 1.60050 1.72874 1.22453 1.28525 1.05395 0.78069 0.74661 0.71543 1.93569 1.52883 1.63234 1.84711 1.93554 1.88178 1.52607 1.60656 1.30613 1.20652 1.13389 1.08504 1.21524 1.03467 0.99036 0.90498 1.19034 0.88986 0.95084 0.97426 1.21307 1.03625 1.31863 0.99471 0.92354 1.25028 0.96126 0.96471 0.96825 1.69981 1.09195 1.42123 1.32084 0.86504 0.78234 0.79278 0.83824 1.19604 1.20978 1.20949 0.91272 0.91728 0.87924 0.91308 0.90422 0.91117 0.91324 0.90943 0.91016 0.89661 0.90153 0.84145 0.85439 0.91768 0.91878 0.96136 0.96108 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.36 16 2 O -0.35 -3.92 10.39 -39.26 -0.41 -4.33 16 3 C 0.44 5.63 5.67 36.00 0.20 5.83 16 4 O -0.49 -7.44 12.56 -18.75 -0.24 -7.68 16 5 C 0.18 1.99 3.26 -68.89 -0.22 1.77 16 6 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 7 C -0.11 -0.88 2.55 -90.26 -0.23 -1.11 16 8 H 0.10 0.66 8.14 -51.92 -0.42 0.23 16 9 C -0.10 -0.67 6.23 -25.91 -0.16 -0.83 16 10 C -0.12 -0.63 6.95 -23.33 -0.16 -0.80 16 11 C -0.10 -0.61 6.69 -26.50 -0.18 -0.79 16 12 C -0.13 -1.05 2.75 -90.33 -0.25 -1.30 16 13 H 0.09 0.90 7.40 -51.93 -0.38 0.52 16 14 C 0.14 1.42 6.82 -3.32 -0.02 1.40 16 15 N -1.00 -12.88 3.01 -106.63 -0.32 -13.20 16 16 S 2.60 43.79 5.54 -107.50 -0.60 43.19 16 17 O -0.95 -17.87 17.64 -57.54 -1.02 -18.88 16 18 O -0.96 -18.17 17.64 -57.54 -1.01 -19.18 16 19 C -0.60 -10.99 5.40 37.16 0.20 -10.79 16 20 C -0.11 -2.34 5.16 -26.73 -0.14 -2.47 16 21 C 0.03 0.89 4.97 -27.89 -0.14 0.75 16 22 C -0.52 -15.31 9.11 -34.44 -0.31 -15.62 16 23 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 24 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 25 N -0.89 -27.31 13.29 55.43 0.74 -26.57 16 26 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 27 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 29 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 30 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 31 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 32 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.53 7.24 -51.93 -0.38 0.15 16 34 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.14 2.62 5.61 -51.92 -0.29 2.33 16 42 H 0.13 2.16 8.14 -51.93 -0.42 1.74 16 43 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 44 H 0.06 1.36 8.14 -51.92 -0.42 0.94 16 45 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 387.22 15.07 5.84 5.84 Total: -1.00 -36.28 387.22 -10.26 -46.54 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -7.78 Total: -1.77 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -0.44 Total: -21.03 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.42 Total: -39.77 kcal Atomic # 8 Polarization: -47.40 SS G_CDS: -2.67 Total: -50.07 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 43.79 SS G_CDS: -0.60 Total: 43.19 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.28 -10.26 -46.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331430117.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.079 kcal (2) G-P(sol) polarization free energy of solvation -36.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds