Wall clock time and date at job start Wed Apr 1 2020 03:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99983 * 2 1 4 4 O 1.20822 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00053 * 180.02562 * 3 2 1 6 6 H 1.08996 * 110.32357 * 42.22213 * 5 3 2 7 7 C 1.50358 * 110.35920 * 280.00225 * 5 3 2 8 8 H 1.09008 * 110.05339 * 160.09823 * 7 5 3 9 9 C 1.50998 * 125.54715 * 25.45950 * 7 5 3 10 10 C 1.56398 * 101.59705 * 203.99742 * 9 7 5 11 11 C 1.55946 * 105.78957 * 25.01971 * 10 9 7 12 12 C 1.50297 * 104.15359 * 7.53938 * 11 10 9 13 13 H 1.09003 * 109.98964 * 80.47719 * 12 11 10 14 14 C 1.50905 * 125.76273 * 214.84047 * 12 11 10 15 15 N 1.49220 * 110.36370 * 164.56533 * 5 3 2 16 16 S 1.65597 * 126.05143 * 291.77661 * 15 5 3 17 17 O 1.42107 * 104.27567 * 206.06996 * 16 15 5 18 18 O 1.42098 * 104.28443 * 333.92444 * 16 15 5 19 19 C 1.81397 * 104.44893 * 90.00320 * 16 15 5 20 20 C 1.53000 * 109.47325 * 179.97438 * 19 16 15 21 21 C 1.53001 * 109.47616 * 179.97438 * 20 19 16 22 22 C 1.50694 * 109.47462 * 179.97438 * 21 20 19 23 23 H 1.08005 * 119.99674 * 0.02562 * 22 21 20 24 24 C 1.37876 * 120.00073 * 179.97438 * 22 21 20 25 25 N 1.31514 * 119.99958 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00025 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47202 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47214 * 120.00363 * 26 24 22 29 29 H 1.48496 * 109.47358 * 240.00228 * 26 24 22 30 30 H 1.09002 * 109.47379 * 59.99613 * 1 2 3 31 31 H 1.09001 * 109.46782 * 299.99696 * 1 2 3 32 32 H 1.09004 * 109.47085 * 179.97438 * 1 2 3 33 33 H 1.09000 * 111.00593 * 322.07994 * 9 7 5 34 34 H 1.09006 * 111.00053 * 85.92396 * 9 7 5 35 35 H 1.09003 * 110.19003 * 265.94252 * 10 9 7 36 36 H 1.09001 * 110.18542 * 144.09616 * 10 9 7 37 37 H 1.09004 * 110.49419 * 248.87724 * 11 10 9 38 38 H 1.08993 * 110.61230 * 126.26251 * 11 10 9 39 39 H 1.08996 * 110.84298 * 274.09870 * 14 12 11 40 40 H 1.09005 * 110.84433 * 37.51021 * 14 12 11 41 41 H 1.09003 * 109.47049 * 299.98986 * 19 16 15 42 42 H 1.08993 * 109.47672 * 59.99411 * 19 16 15 43 43 H 1.09005 * 109.47066 * 300.00147 * 20 19 16 44 44 H 1.09008 * 109.47211 * 59.99630 * 20 19 16 45 45 H 1.08996 * 109.46882 * 300.00156 * 21 20 19 46 46 H 1.09000 * 109.46515 * 59.99829 * 21 20 19 47 47 H 0.96999 * 119.99967 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9837 0.5390 -0.6878 7 6 4.1020 1.0575 1.3874 8 1 5.1514 0.7661 1.3416 9 6 3.4071 0.2897 2.4863 10 6 4.0568 0.9136 3.7649 11 6 4.5304 2.3396 3.3476 12 6 3.9727 2.5217 1.9639 13 1 2.9222 2.8071 2.0201 14 6 4.6382 3.2723 0.8365 15 7 4.0141 2.6488 -0.3728 16 16 3.8496 3.3579 -1.8602 17 8 4.9026 4.3108 -1.9124 18 8 3.8055 2.2646 -2.7669 19 6 2.2400 4.1913 -1.7888 20 6 1.9696 4.8932 -3.1211 21 6 0.6116 5.5956 -3.0613 22 6 0.3456 6.2875 -4.3733 23 1 1.0723 6.2315 -5.1704 24 6 -0.8258 6.9912 -4.5565 25 7 -1.7108 7.0589 -3.5860 26 14 -1.1559 7.8482 -6.1831 27 1 -0.0129 7.6207 -7.1034 28 1 -2.3956 7.2996 -6.7891 29 1 -1.3219 9.3054 -5.9501 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.3320 0.4679 2.4678 34 1 3.6262 -0.7758 2.4172 35 1 4.9083 0.3133 4.0853 36 1 3.3207 0.9812 4.5660 37 1 5.6191 2.3901 3.3299 38 1 4.1253 3.0918 4.0244 39 1 4.4057 4.3359 0.8883 40 1 5.7163 3.1117 0.8468 41 1 1.4581 3.4556 -1.6002 42 1 2.2474 4.9278 -0.9855 43 1 2.7516 5.6289 -3.3095 44 1 1.9623 4.1569 -3.9249 45 1 -0.1700 4.8597 -2.8731 46 1 0.6186 6.3318 -2.2575 47 1 -2.5348 7.5543 -3.7148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331430117.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:44 Heat of formation + Delta-G solvation = -171.885965 kcal Electronic energy + Delta-G solvation = -30099.643461 eV Core-core repulsion = 25987.972730 eV Total energy + Delta-G solvation = -4111.670731 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.38239 -40.46211 -38.38512 -37.67156 -37.24154 -36.55619 -36.02825 -34.22395 -32.07053 -29.93571 -29.67021 -28.86749 -27.48796 -25.69413 -24.35608 -23.08625 -22.34783 -21.29502 -20.61916 -20.04961 -18.88599 -18.66794 -18.60907 -18.36653 -17.41569 -17.20210 -17.09184 -16.60956 -16.51119 -15.86618 -15.67020 -15.22357 -15.03029 -14.60121 -14.46551 -14.39582 -14.06042 -14.00965 -13.58123 -13.49406 -13.39372 -13.36627 -13.31816 -13.06961 -13.02456 -12.80676 -12.68376 -12.61121 -12.30379 -12.16976 -12.04273 -11.92681 -11.84724 -11.71654 -11.49906 -11.41260 -11.26999 -11.16473 -11.11129 -10.63595 -10.29032 -8.26724 -6.39452 -0.96818 0.91743 1.25765 1.36661 1.37275 1.51435 1.70641 2.36245 2.59125 2.64061 3.05955 3.12946 3.39932 3.56838 3.68740 3.74786 3.80488 4.00911 4.07953 4.22317 4.25179 4.27808 4.30231 4.40702 4.46811 4.49099 4.54111 4.59241 4.66385 4.67867 4.81202 4.87953 4.89153 4.95265 4.99621 5.06512 5.16815 5.20561 5.27517 5.30485 5.38123 5.46315 5.52766 5.54787 5.72919 6.12807 6.55953 6.75790 7.30165 8.85416 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015412 B = 0.003119 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.300400 B = 8975.512550 C = 9615.577628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.349 6.349 3 C 0.439 3.561 4 O -0.522 6.522 5 C 0.173 3.827 6 H 0.138 0.862 7 C -0.106 4.106 8 H 0.131 0.869 9 C -0.103 4.103 10 C -0.114 4.114 11 C -0.098 4.098 12 C -0.123 4.123 13 H 0.064 0.936 14 C 0.132 3.868 15 N -1.002 6.002 16 S 2.637 3.363 17 O -0.970 6.970 18 O -0.980 6.980 19 C -0.607 4.607 20 C -0.104 4.104 21 C 0.036 3.964 22 C -0.553 4.553 23 H 0.063 0.937 24 C 0.000 4.000 25 N -0.931 5.931 26 Si 0.970 3.030 27 H -0.262 1.262 28 H -0.275 1.275 29 H -0.274 1.274 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.138 0.862 33 H 0.050 0.950 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.070 0.930 44 H 0.064 0.936 45 H -0.006 1.006 46 H -0.001 1.001 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.346 -18.304 18.409 29.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.264 6.264 3 C 0.281 3.719 4 O -0.411 6.411 5 C 0.065 3.935 6 H 0.155 0.845 7 C -0.126 4.126 8 H 0.149 0.851 9 C -0.141 4.141 10 C -0.152 4.152 11 C -0.137 4.137 12 C -0.143 4.143 13 H 0.082 0.918 14 C 0.009 3.991 15 N -0.840 5.840 16 S 2.734 3.266 17 O -0.961 6.961 18 O -0.970 6.970 19 C -0.737 4.737 20 C -0.143 4.143 21 C -0.002 4.002 22 C -0.590 4.590 23 H 0.081 0.919 24 C -0.198 4.198 25 N -0.571 5.571 26 Si 0.793 3.207 27 H -0.186 1.186 28 H -0.201 1.201 29 H -0.200 1.200 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.156 0.844 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.124 0.876 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.013 0.987 46 H 0.017 0.983 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.608 -17.952 17.648 28.617 hybrid contribution -1.892 1.101 -0.679 2.292 sum 11.715 -16.851 16.970 26.630 Atomic orbital electron populations 1.23580 0.74907 1.05945 1.02290 1.86481 1.24652 1.31946 1.83289 1.24746 0.93253 0.81984 0.71908 1.90693 1.67753 1.37060 1.45628 1.20391 0.85485 0.85386 1.02224 0.84483 1.22294 1.03383 0.97883 0.89002 0.85062 1.21868 0.98649 1.00535 0.93021 1.22941 1.01031 0.94790 0.96406 1.21499 1.02105 0.97618 0.92443 1.22368 1.01030 0.95141 0.95731 0.91778 1.21626 0.98599 0.97387 0.81485 1.59750 1.72584 1.23388 1.28319 1.04130 0.76470 0.73853 0.72115 1.93540 1.52759 1.64164 1.85619 1.93519 1.88049 1.52999 1.62481 1.30636 1.22985 1.13587 1.06515 1.21337 1.00883 0.99203 0.92880 1.18897 0.91058 0.94148 0.96129 1.21740 1.04293 1.32605 1.00410 0.91892 1.26029 0.95712 0.97060 1.00992 1.70108 1.09759 1.42817 1.34428 0.85334 0.78446 0.78127 0.78773 1.18558 1.20076 1.19977 0.93199 0.91578 0.84355 0.93089 0.88752 0.89141 0.91233 0.89127 0.91036 0.90028 0.87638 0.84763 0.84741 0.91123 0.91736 0.98745 0.98259 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.68 16 2 O -0.35 -7.62 10.39 -51.42 -0.53 -8.15 16 3 C 0.44 11.22 5.67 71.24 0.40 11.62 16 4 O -0.52 -16.67 12.56 21.98 0.28 -16.39 16 5 C 0.17 3.60 3.26 42.86 0.14 3.74 16 6 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 7 C -0.11 -1.40 2.55 -10.56 -0.03 -1.42 16 8 H 0.13 1.10 8.14 -2.38 -0.02 1.08 16 9 C -0.10 -1.07 6.23 31.13 0.19 -0.88 16 10 C -0.11 -0.85 6.95 32.80 0.23 -0.62 16 11 C -0.10 -0.90 6.69 30.74 0.21 -0.69 16 12 C -0.12 -1.85 2.75 -10.61 -0.03 -1.88 16 13 H 0.06 1.30 7.40 -2.39 -0.02 1.29 16 14 C 0.13 2.43 6.82 85.08 0.58 3.01 16 15 N -1.00 -24.97 3.01 -491.27 -1.48 -26.45 16 16 S 2.64 88.83 5.54 -56.49 -0.31 88.52 16 17 O -0.97 -35.93 17.64 -127.65 -2.25 -38.18 16 18 O -0.98 -37.01 17.64 -127.65 -2.25 -39.26 16 19 C -0.61 -23.25 5.40 71.98 0.39 -22.86 16 20 C -0.10 -4.78 5.16 30.59 0.16 -4.62 16 21 C 0.04 2.03 4.97 29.85 0.15 2.18 16 22 C -0.55 -33.13 9.11 25.60 0.23 -32.89 16 23 H 0.06 3.62 7.74 -2.91 -0.02 3.59 16 24 C 0.00 0.01 5.46 84.65 0.46 0.47 16 25 N -0.93 -58.24 13.29 21.45 0.28 -57.96 16 26 Si 0.97 45.62 29.54 68.60 2.03 47.65 16 27 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 28 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 29 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 30 H 0.05 1.12 8.13 -2.39 -0.02 1.10 16 31 H 0.07 1.20 8.13 -2.39 -0.02 1.18 16 32 H 0.14 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.05 0.73 7.24 -2.39 -0.02 0.71 16 34 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.13 5.33 5.61 -2.39 -0.01 5.32 16 42 H 0.13 4.82 8.14 -2.39 -0.02 4.80 16 43 H 0.07 3.10 8.14 -2.38 -0.02 3.08 16 44 H 0.06 2.89 8.14 -2.38 -0.02 2.87 16 45 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 46 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 47 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -80.11 387.22 0.99 -79.12 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.95 Total: 14.27 kcal Atomic # 6 Polarization: -47.45 SS G_CDS: 4.28 Total: -43.17 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -1.19 Total: -84.41 kcal Atomic # 8 Polarization: -97.22 SS G_CDS: -4.76 Total: -101.98 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Atomic # 16 Polarization: 88.83 SS G_CDS: -0.31 Total: 88.52 kcal Total: -80.11 0.99 -79.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331430117.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.768 kcal (2) G-P(sol) polarization free energy of solvation -80.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds