Wall clock time and date at job start Wed Apr 1 2020 03:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45200 * 109.47009 * 2 1 4 4 C 1.34230 * 116.99865 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00100 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99802 * 179.97438 * 4 3 2 7 7 H 1.08998 * 109.49528 * 59.93316 * 6 4 3 8 8 C 1.53043 * 109.49824 * 299.83414 * 6 4 3 9 9 C 1.53037 * 109.53614 * 178.68472 * 8 6 4 10 10 C 1.52754 * 109.38440 * 61.24315 * 9 8 6 11 11 N 1.46929 * 109.00803 * 305.58429 * 10 9 8 12 12 S 1.65598 * 120.63205 * 233.58381 * 11 10 9 13 13 O 1.42104 * 104.27721 * 153.64655 * 12 11 10 14 14 O 1.42102 * 104.27547 * 25.79258 * 12 11 10 15 15 C 1.81402 * 104.44974 * 269.72203 * 12 11 10 16 16 C 1.52997 * 109.46907 * 186.15188 * 15 12 11 17 17 C 1.50700 * 115.55137 * 299.71205 * 16 15 12 18 18 H 1.08001 * 119.99834 * 95.16403 * 17 16 15 19 19 C 1.37879 * 120.00395 * 275.17122 * 17 16 15 20 20 N 1.31523 * 119.99555 * 7.13841 * 19 17 16 21 21 Si 1.86796 * 120.00338 * 187.14092 * 19 17 16 22 22 H 1.48502 * 109.47155 * 179.97438 * 21 19 17 23 23 H 1.48499 * 109.47227 * 299.99788 * 21 19 17 24 24 H 1.48503 * 109.46910 * 60.00150 * 21 19 17 25 25 C 1.53000 * 117.50378 * 85.38311 * 16 15 12 26 26 C 1.53001 * 117.50075 * 154.04670 * 16 15 12 27 27 C 1.46925 * 118.73509 * 53.31111 * 11 10 9 28 28 H 1.09005 * 109.47076 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47103 * 300.00648 * 1 2 3 30 30 H 1.09005 * 109.46826 * 60.00368 * 1 2 3 31 31 H 1.09001 * 109.46891 * 239.99805 * 2 1 3 32 32 H 1.08995 * 109.46877 * 119.99662 * 2 1 3 33 33 H 1.09001 * 109.45661 * 298.70647 * 8 6 4 34 34 H 1.08999 * 109.45580 * 58.67550 * 8 6 4 35 35 H 1.09006 * 109.49552 * 181.31745 * 9 8 6 36 36 H 1.09004 * 109.49803 * 301.37875 * 9 8 6 37 37 H 1.09004 * 109.50933 * 185.70388 * 10 9 8 38 38 H 1.09001 * 109.43675 * 65.42091 * 10 9 8 39 39 H 1.08999 * 109.46948 * 66.15003 * 15 12 11 40 40 H 1.08999 * 109.47060 * 306.14697 * 15 12 11 41 41 H 0.96997 * 119.99636 * 355.44705 * 20 19 17 42 42 H 1.08996 * 117.50223 * 215.00081 * 25 16 15 43 43 H 1.08999 * 117.49313 * 0.02577 * 25 16 15 44 44 H 1.08998 * 117.49489 * 359.96915 * 26 16 15 45 45 H 1.08996 * 117.50113 * 144.99681 * 26 16 15 46 46 H 1.08998 * 109.58919 * 66.42980 * 27 11 10 47 47 H 1.09007 * 109.58602 * 186.71120 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 -0.0012 7 1 3.5844 3.4706 0.8880 8 6 3.4523 3.6834 -1.2527 9 6 4.0100 5.1085 -1.2378 10 6 5.5365 5.0557 -1.2491 11 7 5.9946 4.2164 -0.1335 12 16 7.0979 4.7931 0.9585 13 8 6.8362 4.0549 2.1443 14 8 6.9249 6.2030 0.9202 15 6 8.7079 4.3302 0.2627 16 6 9.8137 4.6759 1.2620 17 6 9.9215 6.1323 1.6341 18 1 9.4306 6.5002 2.5229 19 6 10.6467 6.9950 0.8398 20 7 11.1262 6.5815 -0.3130 21 14 10.9482 8.7510 1.4009 22 1 11.7484 9.4678 0.3757 23 1 9.6468 9.4419 1.5859 24 1 11.6896 8.7391 2.6876 25 6 10.1347 3.6444 2.3454 26 6 11.1109 3.8680 1.1877 27 6 5.4505 2.8580 -0.0017 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8099 3.1627 -2.1409 34 1 2.3630 3.7200 -1.2671 35 1 3.6568 5.6465 -2.1176 36 1 3.6723 5.6220 -0.3375 37 1 5.9365 6.0634 -1.1365 38 1 5.8777 4.6281 -2.1920 39 1 8.8732 4.8769 -0.6657 40 1 8.7223 3.2591 0.0612 41 1 11.0268 5.6527 -0.5744 42 1 10.4238 4.0191 3.3273 43 1 9.5583 2.7193 2.3460 44 1 11.1763 3.0899 0.4273 45 1 12.0422 4.3898 1.4080 46 1 5.7844 2.2476 -0.8407 47 1 5.7959 2.4151 0.9326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331934729.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:06 Heat of formation + Delta-G solvation = -147.467285 kcal Electronic energy + Delta-G solvation = -29689.099142 eV Core-core repulsion = 25578.487284 eV Total energy + Delta-G solvation = -4110.611857 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.89817 -38.41971 -37.07651 -36.77691 -36.41514 -35.16875 -32.93778 -31.99008 -31.92224 -31.32905 -28.30989 -25.23859 -25.04401 -24.55643 -23.15844 -21.55908 -21.40670 -20.38736 -19.79999 -18.54608 -17.76233 -17.30999 -16.87177 -16.81531 -16.36305 -15.70264 -15.42565 -14.85261 -14.59520 -14.29480 -14.05659 -13.93077 -13.72927 -13.65807 -13.52700 -13.19004 -13.12767 -12.85697 -12.58359 -12.23757 -12.04426 -11.89062 -11.68989 -11.63054 -11.51195 -11.32780 -11.19915 -11.13916 -10.91728 -10.81322 -10.77883 -10.66670 -10.58215 -10.41859 -10.35295 -10.08711 -9.71630 -8.98924 -8.66665 -8.49625 -8.30711 -6.47057 -4.25922 0.89476 1.99114 2.37372 3.23030 3.44759 3.48629 3.65503 4.26553 4.43432 4.46602 4.48396 4.57421 4.61153 4.63930 4.77258 4.86731 4.91515 4.93488 5.00965 5.08833 5.16267 5.22395 5.34186 5.38582 5.41079 5.51557 5.60089 5.61929 5.68261 5.73702 5.76576 5.82565 5.85831 6.05181 6.13187 6.15152 6.19025 6.21651 6.34750 6.53993 6.69233 6.76907 7.01103 7.17347 7.52639 8.02635 8.32093 8.75572 9.53483 10.92860 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021333 B = 0.003004 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.202642 B = 9317.150334 C = 9992.879540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.357 6.357 4 C 0.472 3.528 5 O -0.505 6.505 6 C -0.093 4.093 7 H 0.116 0.884 8 C -0.107 4.107 9 C -0.130 4.130 10 C 0.112 3.888 11 N -1.011 6.011 12 S 2.615 3.385 13 O -0.968 6.968 14 O -0.939 6.939 15 C -0.567 4.567 16 C 0.021 3.979 17 C -0.593 4.593 18 H 0.062 0.938 19 C 0.040 3.960 20 N -0.897 5.897 21 Si 1.062 2.938 22 H -0.281 1.281 23 H -0.280 1.280 24 H -0.285 1.285 25 C -0.191 4.191 26 C -0.164 4.164 27 C 0.135 3.865 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.125 0.875 40 H 0.100 0.900 41 H 0.275 0.725 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.089 0.911 46 H 0.076 0.924 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.460 -9.801 -4.520 21.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.274 6.274 4 C 0.314 3.686 5 O -0.392 6.392 6 C -0.114 4.114 7 H 0.134 0.866 8 C -0.145 4.145 9 C -0.169 4.169 10 C -0.014 4.014 11 N -0.846 5.846 12 S 2.713 3.287 13 O -0.958 6.958 14 O -0.929 6.929 15 C -0.699 4.699 16 C 0.019 3.981 17 C -0.630 4.630 18 H 0.080 0.920 19 C -0.167 4.167 20 N -0.530 5.530 21 Si 0.890 3.110 22 H -0.206 1.206 23 H -0.206 1.206 24 H -0.212 1.212 25 C -0.228 4.228 26 C -0.203 4.203 27 C 0.008 3.992 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.120 0.880 38 H 0.085 0.915 39 H 0.144 0.856 40 H 0.119 0.881 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.107 0.893 46 H 0.094 0.906 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -17.823 -8.200 -4.216 20.067 hybrid contribution -0.271 -2.182 -0.111 2.201 sum -18.094 -10.382 -4.328 21.305 Atomic orbital electron populations 1.21807 0.92577 1.02966 1.03581 1.23044 0.95395 0.80266 1.02701 1.86508 1.24523 1.32354 1.83974 1.23635 0.80562 0.92385 0.72013 1.90679 1.60359 1.43098 1.45058 1.21450 0.97065 0.89936 1.02964 0.86587 1.21490 1.01349 0.96062 0.95571 1.21801 0.95665 0.95959 1.03430 1.21403 0.94791 0.96046 0.89133 1.58226 1.58823 1.22656 1.44918 1.05006 0.75679 0.74342 0.73713 1.93489 1.84254 1.73978 1.44092 1.93539 1.84855 1.28980 1.85538 1.30148 1.19849 1.08164 1.11740 1.18558 0.91978 0.93727 0.93852 1.21385 1.37572 0.90536 1.13498 0.92021 1.25821 0.92541 1.05307 0.93027 1.70773 1.44137 1.19177 1.18923 0.83644 0.77002 0.74678 0.75724 1.20629 1.20620 1.21156 1.23053 1.04683 1.00082 0.94981 1.22793 0.95437 1.02247 0.99858 1.21145 0.90270 0.83406 1.04341 0.90248 0.91398 0.91466 0.91207 0.91128 0.91126 0.90296 0.89993 0.90805 0.88031 0.91485 0.85633 0.88113 0.91405 0.89252 0.90616 0.91182 0.89269 0.90575 0.88011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.29 37.16 0.38 -0.47 16 2 C 0.06 0.49 6.19 37.16 0.23 0.72 16 3 O -0.36 -3.76 10.11 -39.26 -0.40 -4.15 16 4 C 0.47 5.75 7.26 36.01 0.26 6.01 16 5 O -0.50 -7.38 15.67 -18.75 -0.29 -7.67 16 6 C -0.09 -1.09 2.78 -91.65 -0.25 -1.34 16 7 H 0.12 1.33 8.14 -51.93 -0.42 0.90 16 8 C -0.11 -1.00 5.11 -26.69 -0.14 -1.14 16 9 C -0.13 -1.31 6.06 -26.84 -0.16 -1.47 16 10 C 0.11 1.43 6.40 -3.93 -0.03 1.40 16 11 N -1.01 -15.45 3.23 -113.77 -0.37 -15.82 16 12 S 2.61 53.24 5.10 -107.50 -0.55 52.69 16 13 O -0.97 -21.36 16.59 -57.54 -0.95 -22.32 16 14 O -0.94 -22.11 16.08 -57.54 -0.92 -23.04 16 15 C -0.57 -11.86 5.98 37.16 0.22 -11.63 16 16 C 0.02 0.52 0.95 -155.66 -0.15 0.37 16 17 C -0.59 -16.41 7.88 -34.44 -0.27 -16.68 16 18 H 0.06 1.76 7.82 -52.49 -0.41 1.35 16 19 C 0.04 1.13 5.39 -17.82 -0.10 1.03 16 20 N -0.90 -25.68 13.57 55.43 0.75 -24.93 16 21 Si 1.06 25.17 29.91 -169.99 -5.08 20.08 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 25 C -0.19 -4.21 9.95 -26.69 -0.27 -4.47 16 26 C -0.16 -3.70 8.75 -26.69 -0.23 -3.93 16 27 C 0.13 1.85 5.07 -3.71 -0.02 1.83 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 32 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 1.44 6.85 -51.93 -0.36 1.09 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.13 2.67 7.79 -51.92 -0.40 2.26 16 40 H 0.10 1.78 8.11 -51.92 -0.42 1.36 16 41 H 0.27 7.68 6.17 -40.82 -0.25 7.42 16 42 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 43 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 46 H 0.08 0.95 7.96 -51.93 -0.41 0.54 16 47 H 0.10 1.53 6.86 -51.92 -0.36 1.18 16 LS Contribution 393.23 15.07 5.93 5.93 Total: -1.00 -34.34 393.23 -10.15 -44.50 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -7.75 Total: 4.51 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: -0.52 Total: -29.77 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.38 Total: -40.75 kcal Atomic # 8 Polarization: -54.61 SS G_CDS: -2.57 Total: -57.18 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.08 Total: 20.08 kcal Atomic # 16 Polarization: 53.24 SS G_CDS: -0.55 Total: 52.69 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.34 -10.15 -44.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331934729.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.970 kcal (2) G-P(sol) polarization free energy of solvation -34.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds