Wall clock time and date at job start Wed Apr 1 2020 03:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45200 * 109.47009 * 2 1 4 4 C 1.34230 * 116.99865 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00100 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99802 * 179.97438 * 4 3 2 7 7 H 1.08998 * 109.49528 * 59.93316 * 6 4 3 8 8 C 1.53043 * 109.49824 * 299.83414 * 6 4 3 9 9 C 1.53037 * 109.53614 * 178.68472 * 8 6 4 10 10 C 1.52754 * 109.38440 * 61.24315 * 9 8 6 11 11 N 1.46929 * 109.00803 * 305.58429 * 10 9 8 12 12 S 1.65598 * 120.63205 * 233.58381 * 11 10 9 13 13 O 1.42104 * 104.27721 * 153.64655 * 12 11 10 14 14 O 1.42102 * 104.27547 * 25.79258 * 12 11 10 15 15 C 1.81402 * 104.44974 * 269.72203 * 12 11 10 16 16 C 1.52997 * 109.46907 * 186.15188 * 15 12 11 17 17 C 1.50700 * 115.55137 * 299.71205 * 16 15 12 18 18 H 1.08001 * 119.99834 * 95.16403 * 17 16 15 19 19 C 1.37879 * 120.00395 * 275.17122 * 17 16 15 20 20 N 1.31523 * 119.99555 * 7.13841 * 19 17 16 21 21 Si 1.86796 * 120.00338 * 187.14092 * 19 17 16 22 22 H 1.48502 * 109.47155 * 179.97438 * 21 19 17 23 23 H 1.48499 * 109.47227 * 299.99788 * 21 19 17 24 24 H 1.48503 * 109.46910 * 60.00150 * 21 19 17 25 25 C 1.53000 * 117.50378 * 85.38311 * 16 15 12 26 26 C 1.53001 * 117.50075 * 154.04670 * 16 15 12 27 27 C 1.46925 * 118.73509 * 53.31111 * 11 10 9 28 28 H 1.09005 * 109.47076 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47103 * 300.00648 * 1 2 3 30 30 H 1.09005 * 109.46826 * 60.00368 * 1 2 3 31 31 H 1.09001 * 109.46891 * 239.99805 * 2 1 3 32 32 H 1.08995 * 109.46877 * 119.99662 * 2 1 3 33 33 H 1.09001 * 109.45661 * 298.70647 * 8 6 4 34 34 H 1.08999 * 109.45580 * 58.67550 * 8 6 4 35 35 H 1.09006 * 109.49552 * 181.31745 * 9 8 6 36 36 H 1.09004 * 109.49803 * 301.37875 * 9 8 6 37 37 H 1.09004 * 109.50933 * 185.70388 * 10 9 8 38 38 H 1.09001 * 109.43675 * 65.42091 * 10 9 8 39 39 H 1.08999 * 109.46948 * 66.15003 * 15 12 11 40 40 H 1.08999 * 109.47060 * 306.14697 * 15 12 11 41 41 H 0.96997 * 119.99636 * 355.44705 * 20 19 17 42 42 H 1.08996 * 117.50223 * 215.00081 * 25 16 15 43 43 H 1.08999 * 117.49313 * 0.02577 * 25 16 15 44 44 H 1.08998 * 117.49489 * 359.96915 * 26 16 15 45 45 H 1.08996 * 117.50113 * 144.99681 * 26 16 15 46 46 H 1.08998 * 109.58919 * 66.42980 * 27 11 10 47 47 H 1.09007 * 109.58602 * 186.71120 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 -0.0012 7 1 3.5844 3.4706 0.8880 8 6 3.4523 3.6834 -1.2527 9 6 4.0100 5.1085 -1.2378 10 6 5.5365 5.0557 -1.2491 11 7 5.9946 4.2164 -0.1335 12 16 7.0979 4.7931 0.9585 13 8 6.8362 4.0549 2.1443 14 8 6.9249 6.2030 0.9202 15 6 8.7079 4.3302 0.2627 16 6 9.8137 4.6759 1.2620 17 6 9.9215 6.1323 1.6341 18 1 9.4306 6.5002 2.5229 19 6 10.6467 6.9950 0.8398 20 7 11.1262 6.5815 -0.3130 21 14 10.9482 8.7510 1.4009 22 1 11.7484 9.4678 0.3757 23 1 9.6468 9.4419 1.5859 24 1 11.6896 8.7391 2.6876 25 6 10.1347 3.6444 2.3454 26 6 11.1109 3.8680 1.1877 27 6 5.4505 2.8580 -0.0017 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8099 3.1627 -2.1409 34 1 2.3630 3.7200 -1.2671 35 1 3.6568 5.6465 -2.1176 36 1 3.6723 5.6220 -0.3375 37 1 5.9365 6.0634 -1.1365 38 1 5.8777 4.6281 -2.1920 39 1 8.8732 4.8769 -0.6657 40 1 8.7223 3.2591 0.0612 41 1 11.0268 5.6527 -0.5744 42 1 10.4238 4.0191 3.3273 43 1 9.5583 2.7193 2.3460 44 1 11.1763 3.0899 0.4273 45 1 12.0422 4.3898 1.4080 46 1 5.7844 2.2476 -0.8407 47 1 5.7959 2.4151 0.9326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331934729.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:05 Heat of formation + Delta-G solvation = -169.069223 kcal Electronic energy + Delta-G solvation = -29690.035872 eV Core-core repulsion = 25578.487284 eV Total energy + Delta-G solvation = -4111.548587 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.81727 -39.39731 -38.91360 -38.13795 -37.67397 -36.88236 -34.06807 -33.92459 -32.67586 -32.16631 -30.00813 -27.08973 -26.13130 -25.63530 -23.83504 -23.19445 -22.47759 -21.73499 -21.30087 -19.87702 -18.97012 -18.79212 -18.50256 -17.65036 -17.42881 -17.09960 -17.00075 -15.95750 -15.83154 -15.64650 -15.52076 -15.27191 -15.16802 -14.79382 -14.60389 -14.45978 -14.42298 -13.93277 -13.70224 -13.58344 -13.14022 -13.09204 -13.01284 -13.00051 -12.91043 -12.68770 -12.67796 -12.46061 -12.39665 -12.14839 -12.07436 -11.97973 -11.93930 -11.63392 -11.53874 -11.47132 -11.34854 -10.61968 -10.55422 -10.38318 -9.94196 -8.63937 -6.42183 -0.68854 1.05969 1.49334 1.52200 1.58912 1.78367 1.88275 2.53226 2.86651 3.10020 3.13174 3.26135 3.31905 3.63301 3.69798 3.74697 3.94031 4.01060 4.01444 4.07825 4.11762 4.20876 4.25306 4.33100 4.35641 4.37384 4.47926 4.58917 4.69828 4.71216 4.78160 4.83336 4.84854 4.92639 4.93526 4.97461 5.08413 5.13281 5.14976 5.20375 5.33173 5.37883 5.40629 5.57790 5.98938 6.13336 6.62003 6.62536 7.41142 8.77788 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021333 B = 0.003004 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.202642 B = 9317.150334 C = 9992.879540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.355 6.355 4 C 0.478 3.522 5 O -0.534 6.534 6 C -0.094 4.094 7 H 0.115 0.885 8 C -0.100 4.100 9 C -0.125 4.125 10 C 0.099 3.901 11 N -1.001 6.001 12 S 2.627 3.373 13 O -0.991 6.991 14 O -0.979 6.979 15 C -0.565 4.565 16 C -0.013 4.013 17 C -0.606 4.606 18 H 0.040 0.960 19 C -0.001 4.001 20 N -0.916 5.916 21 Si 1.093 2.907 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.269 1.269 25 C -0.182 4.182 26 C -0.157 4.157 27 C 0.129 3.871 28 H 0.099 0.901 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.119 0.881 40 H 0.133 0.867 41 H 0.271 0.729 42 H 0.083 0.917 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.070 0.930 46 H 0.093 0.907 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.255 -10.836 -5.794 23.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 O -0.271 6.271 4 C 0.321 3.679 5 O -0.423 6.423 6 C -0.115 4.115 7 H 0.133 0.867 8 C -0.137 4.137 9 C -0.164 4.164 10 C -0.025 4.025 11 N -0.839 5.839 12 S 2.725 3.275 13 O -0.981 6.981 14 O -0.969 6.969 15 C -0.697 4.697 16 C -0.015 4.015 17 C -0.643 4.643 18 H 0.058 0.942 19 C -0.204 4.204 20 N -0.550 5.550 21 Si 0.915 3.085 22 H -0.199 1.199 23 H -0.204 1.204 24 H -0.194 1.194 25 C -0.219 4.219 26 C -0.196 4.196 27 C 0.004 3.996 28 H 0.117 0.883 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.131 0.869 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.137 0.863 40 H 0.152 0.848 41 H 0.082 0.918 42 H 0.102 0.898 43 H 0.118 0.882 44 H 0.114 0.886 45 H 0.088 0.912 46 H 0.111 0.889 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.627 -9.241 -5.476 22.374 hybrid contribution 0.201 -1.951 0.291 1.983 sum -19.425 -11.192 -5.185 23.011 Atomic orbital electron populations 1.21825 0.90321 1.04363 1.03792 1.23334 0.97149 0.79114 1.02659 1.86504 1.23411 1.33805 1.83420 1.23637 0.80957 0.92066 0.71214 1.90669 1.61090 1.43969 1.46604 1.21438 0.95466 0.90177 1.04403 0.86675 1.21508 1.02546 0.95060 0.94621 1.21818 0.93326 0.96841 1.04443 1.21740 0.96910 0.94839 0.89032 1.57778 1.57571 1.23670 1.44873 1.04299 0.75924 0.73358 0.73926 1.93449 1.84591 1.74100 1.45981 1.93483 1.85495 1.31589 1.86374 1.30055 1.19150 1.10198 1.10324 1.18667 0.94068 0.92670 0.96063 1.21574 1.37220 0.92820 1.12725 0.94183 1.26881 0.92331 1.08265 0.92896 1.70848 1.45443 1.19155 1.19576 0.83259 0.77267 0.71620 0.76309 1.19916 1.20387 1.19422 1.23115 1.04243 1.00229 0.94339 1.22758 0.94006 1.02177 1.00671 1.21287 0.91925 0.82222 1.04209 0.88267 0.91458 0.90936 0.90925 0.91613 0.89855 0.88244 0.86946 0.91795 0.89964 0.88861 0.86313 0.84844 0.91841 0.89829 0.88196 0.88621 0.91166 0.88930 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.29 71.98 0.74 -0.54 16 2 C 0.05 0.75 6.19 71.98 0.45 1.20 16 3 O -0.35 -6.79 10.11 -51.41 -0.52 -7.31 16 4 C 0.48 10.88 7.26 71.24 0.52 11.40 16 5 O -0.53 -15.01 15.67 21.98 0.34 -14.67 16 6 C -0.09 -2.02 2.78 -11.46 -0.03 -2.06 16 7 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 8 C -0.10 -1.56 5.11 30.62 0.16 -1.41 16 9 C -0.13 -2.21 6.06 30.52 0.19 -2.03 16 10 C 0.10 2.38 6.40 86.22 0.55 2.93 16 11 N -1.00 -29.70 3.23 -513.84 -1.66 -31.36 16 12 S 2.63 107.71 5.10 -56.49 -0.29 107.42 16 13 O -0.99 -44.15 16.59 -127.65 -2.12 -46.27 16 14 O -0.98 -47.40 16.08 -127.65 -2.05 -49.45 16 15 C -0.57 -23.43 5.98 71.98 0.43 -23.00 16 16 C -0.01 -0.61 0.95 -52.93 -0.05 -0.66 16 17 C -0.61 -34.24 7.88 25.60 0.20 -34.04 16 18 H 0.04 2.36 7.82 -2.91 -0.02 2.34 16 19 C 0.00 -0.05 5.39 84.65 0.46 0.40 16 20 N -0.92 -52.92 13.57 21.45 0.29 -52.63 16 21 Si 1.09 51.10 29.91 68.60 2.05 53.15 16 22 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 C -0.18 -7.92 9.95 30.62 0.30 -7.62 16 26 C -0.16 -6.99 8.75 30.62 0.27 -6.72 16 27 C 0.13 3.38 5.07 86.36 0.44 3.82 16 28 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.07 1.04 8.13 -2.39 -0.02 1.02 16 32 H 0.07 1.04 8.13 -2.39 -0.02 1.02 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.10 1.21 8.09 -2.39 -0.02 1.19 16 35 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.08 2.33 6.85 -2.38 -0.02 2.31 16 38 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.12 5.06 7.79 -2.39 -0.02 5.04 16 40 H 0.13 4.50 8.11 -2.39 -0.02 4.48 16 41 H 0.27 15.28 6.17 -92.71 -0.57 14.71 16 42 H 0.08 3.68 8.14 -2.39 -0.02 3.66 16 43 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 44 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 45 H 0.07 3.36 8.14 -2.39 -0.02 3.34 16 46 H 0.09 2.12 7.96 -2.39 -0.02 2.11 16 47 H 0.08 2.52 6.86 -2.38 -0.02 2.50 16 Total: -1.00 -75.29 393.23 1.81 -73.48 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: 1.15 Total: 25.94 kcal Atomic # 6 Polarization: -62.92 SS G_CDS: 4.61 Total: -58.31 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -1.37 Total: -83.98 kcal Atomic # 8 Polarization: -113.35 SS G_CDS: -4.34 Total: -117.70 kcal Atomic # 14 Polarization: 51.10 SS G_CDS: 2.05 Total: 53.15 kcal Atomic # 16 Polarization: 107.71 SS G_CDS: -0.29 Total: 107.42 kcal Total: -75.29 1.81 -73.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331934729.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.588 kcal (2) G-P(sol) polarization free energy of solvation -75.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds