Wall clock time and date at job start Wed Apr 1 2020 03:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.45200 * 109.47299 * 2 1 4 4 C 1.34233 * 116.99919 * 179.97438 * 3 2 1 5 5 O 1.20820 * 120.00277 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99604 * 180.02562 * 4 3 2 7 7 H 1.08997 * 109.49788 * 299.93166 * 6 4 3 8 8 C 1.53036 * 109.49655 * 60.00112 * 6 4 3 9 9 C 1.53042 * 109.53779 * 181.31466 * 8 6 4 10 10 C 1.53190 * 109.31292 * 298.63575 * 9 8 6 11 11 N 1.46927 * 108.77918 * 54.63066 * 10 9 8 12 12 S 1.65605 * 120.63121 * 126.36596 * 11 10 9 13 13 O 1.42097 * 104.27523 * 333.93635 * 12 11 10 14 14 O 1.42100 * 104.27762 * 206.07520 * 12 11 10 15 15 C 1.81402 * 104.44503 * 90.00787 * 12 11 10 16 16 C 1.52999 * 109.46768 * 172.69593 * 15 12 11 17 17 C 1.50701 * 115.55247 * 39.93946 * 16 15 12 18 18 H 1.08006 * 119.99544 * 272.15159 * 17 16 15 19 19 C 1.37872 * 120.00368 * 92.14906 * 17 16 15 20 20 N 1.31517 * 120.00182 * 173.94065 * 19 17 16 21 21 Si 1.86805 * 119.99759 * 353.94074 * 19 17 16 22 22 H 1.48502 * 109.46857 * 93.63019 * 21 19 17 23 23 H 1.48504 * 109.46811 * 213.62683 * 21 19 17 24 24 H 1.48491 * 109.47337 * 333.62788 * 21 19 17 25 25 C 1.53000 * 117.49835 * 254.22714 * 16 15 12 26 26 C 1.53003 * 60.00091 * 252.51173 * 25 16 15 27 27 C 1.46928 * 118.73737 * 306.65077 * 11 10 9 28 28 H 1.09009 * 109.47364 * 59.99918 * 1 2 3 29 29 H 1.08998 * 109.47701 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47406 * 299.99832 * 1 2 3 31 31 H 1.09010 * 109.47271 * 240.00085 * 2 1 3 32 32 H 1.08997 * 109.47519 * 120.00409 * 2 1 3 33 33 H 1.09001 * 109.46396 * 61.29546 * 8 6 4 34 34 H 1.09000 * 109.45050 * 301.32348 * 8 6 4 35 35 H 1.08998 * 109.50212 * 178.68493 * 9 8 6 36 36 H 1.09003 * 109.49791 * 58.58724 * 9 8 6 37 37 H 1.09000 * 109.58809 * 294.84482 * 10 9 8 38 38 H 1.09001 * 109.70778 * 174.49387 * 10 9 8 39 39 H 1.09008 * 109.46758 * 292.69041 * 15 12 11 40 40 H 1.08992 * 109.47402 * 52.69453 * 15 12 11 41 41 H 0.96995 * 120.00131 * 180.02562 * 20 19 17 42 42 H 1.09004 * 117.49598 * 359.97438 * 25 16 15 43 43 H 1.08994 * 117.49855 * 145.02039 * 25 16 15 44 44 H 1.08997 * 117.49545 * 252.50545 * 26 25 16 45 45 H 1.09000 * 117.49762 * 107.48524 * 26 25 16 46 46 H 1.09001 * 109.58740 * 173.14191 * 27 11 10 47 47 H 1.08999 * 109.58390 * 293.56121 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0012 7 1 3.5863 3.4698 -0.8892 8 6 3.4489 3.6847 1.2506 9 6 4.0067 5.1098 1.2357 10 6 5.5375 5.0549 1.2543 11 7 5.9943 4.2164 0.1376 12 16 7.1005 4.7919 -0.9522 13 8 6.9270 6.2018 -0.9162 14 8 6.8424 4.0520 -2.1375 15 6 8.7087 4.3303 -0.2512 16 6 9.8146 4.6484 -1.2595 17 6 9.6516 5.9410 -2.0169 18 1 9.0858 5.9601 -2.9368 19 6 10.2244 7.0991 -1.5357 20 7 10.1845 8.2001 -2.2539 21 14 11.0572 7.1042 0.1364 22 1 12.5091 6.8424 -0.0329 23 1 10.8648 8.4282 0.7811 24 1 10.4597 6.0464 0.9903 25 6 10.4569 3.4724 -1.9980 26 6 11.2379 4.2100 -0.9086 27 6 5.4463 2.8599 0.0026 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.8042 3.1650 2.1404 34 1 2.3596 3.7212 1.2619 35 1 3.6513 5.6488 2.1139 36 1 3.6719 5.6221 0.3337 37 1 5.8763 4.6246 2.1967 38 1 5.9427 6.0610 1.1454 39 1 8.8803 4.8935 0.6661 40 1 8.7155 3.2633 -0.0291 41 1 10.5879 9.0148 -1.9155 42 1 10.0918 2.4721 -1.7653 43 1 10.7614 3.6335 -3.0321 44 1 12.0563 4.8562 -1.2260 45 1 11.3863 3.6950 0.0405 46 1 5.7893 2.4187 -0.9333 47 1 5.7776 2.2469 0.8408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331934747.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:09 Heat of formation + Delta-G solvation = -136.242697 kcal Electronic energy + Delta-G solvation = -29787.307365 eV Core-core repulsion = 25677.182243 eV Total energy + Delta-G solvation = -4110.125123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.88459 -38.39980 -37.11151 -36.75677 -36.30996 -35.03861 -32.92146 -32.18627 -31.89678 -31.30961 -28.51044 -25.59435 -25.22218 -24.54980 -23.14169 -21.72702 -21.53990 -20.34933 -19.42464 -18.46203 -17.74037 -17.28516 -16.81436 -16.66181 -16.25054 -15.66815 -15.33550 -14.87063 -14.81736 -14.46954 -14.23621 -13.91347 -13.89359 -13.56627 -13.49574 -13.16442 -12.97770 -12.82964 -12.62648 -12.55783 -12.21992 -12.02417 -11.66808 -11.56319 -11.45544 -11.30050 -11.18042 -11.11466 -10.86521 -10.82909 -10.78977 -10.60426 -10.56513 -10.40029 -10.35353 -10.08846 -9.75066 -9.15630 -8.93540 -8.65847 -8.46108 -6.20264 -4.31526 0.95019 2.01004 2.39509 3.22234 3.30830 3.31600 3.35101 4.29075 4.33775 4.47758 4.51057 4.59605 4.63748 4.66127 4.72805 4.86246 4.89187 4.93544 5.00377 5.08039 5.11021 5.20160 5.35677 5.39836 5.42536 5.49859 5.60415 5.62444 5.65057 5.74624 5.77233 5.82110 5.86300 5.99669 6.06192 6.14662 6.18016 6.21065 6.23096 6.41829 6.60219 6.74712 6.83470 7.06778 7.54458 7.58391 8.32508 8.82971 9.41839 10.91185 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021296 B = 0.003143 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.472173 B = 8905.206836 C = 9439.387449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.356 6.356 4 C 0.472 3.528 5 O -0.505 6.505 6 C -0.094 4.094 7 H 0.117 0.883 8 C -0.107 4.107 9 C -0.130 4.130 10 C 0.111 3.889 11 N -1.014 6.014 12 S 2.625 3.375 13 O -0.930 6.930 14 O -0.961 6.961 15 C -0.583 4.583 16 C 0.009 3.991 17 C -0.536 4.536 18 H 0.087 0.913 19 C 0.101 3.899 20 N -0.873 5.873 21 Si 0.877 3.123 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.258 1.258 25 C -0.173 4.173 26 C -0.189 4.189 27 C 0.134 3.866 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.101 0.899 39 H 0.122 0.878 40 H 0.106 0.894 41 H 0.269 0.731 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.075 0.925 46 H 0.103 0.897 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.129 -12.681 10.543 23.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.273 6.273 4 C 0.314 3.686 5 O -0.392 6.392 6 C -0.115 4.115 7 H 0.135 0.865 8 C -0.144 4.144 9 C -0.169 4.169 10 C -0.015 4.015 11 N -0.850 5.850 12 S 2.722 3.278 13 O -0.920 6.920 14 O -0.952 6.952 15 C -0.714 4.714 16 C 0.006 3.994 17 C -0.573 4.573 18 H 0.105 0.895 19 C -0.106 4.106 20 N -0.507 5.507 21 Si 0.704 3.296 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.182 1.182 25 C -0.210 4.210 26 C -0.227 4.227 27 C 0.008 3.992 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.119 0.881 39 H 0.140 0.860 40 H 0.125 0.875 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.093 0.907 46 H 0.121 0.879 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.113 -12.316 9.738 22.497 hybrid contribution 0.943 -0.458 1.423 1.767 sum -15.170 -12.774 11.161 22.756 Atomic orbital electron populations 1.21805 0.92595 1.02953 1.03589 1.23041 0.95385 0.80282 1.02690 1.86510 1.24534 1.32334 1.83971 1.23632 0.80553 0.92382 0.71987 1.90676 1.60359 1.43102 1.45094 1.21374 0.97156 0.89939 1.03024 0.86502 1.21485 1.01340 0.96045 0.95571 1.21871 0.95584 0.95956 1.03463 1.21482 0.94875 0.96012 0.89090 1.58383 1.58669 1.22857 1.45043 1.04759 0.75114 0.74407 0.73531 1.93563 1.84629 1.28535 1.85283 1.93486 1.84078 1.74028 1.43602 1.30341 1.21087 1.08904 1.11029 1.18758 0.88871 0.96127 0.95636 1.20415 1.37760 0.89051 1.10067 0.89480 1.24930 0.94035 0.94929 0.96717 1.69882 1.42556 1.01035 1.37218 0.86895 0.80119 0.77505 0.85034 1.20154 1.21498 1.18211 1.22970 1.05368 0.95202 0.97484 1.22947 0.96639 1.04472 0.98640 1.21060 0.90309 0.83504 1.04354 0.91381 0.90266 0.91478 0.91109 0.91236 0.91200 0.90311 0.90108 0.90652 0.91615 0.88099 0.86020 0.87511 0.92118 0.90534 0.88758 0.88978 0.90668 0.87888 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.29 37.15 0.38 -0.47 16 2 C 0.06 0.49 6.19 37.15 0.23 0.72 16 3 O -0.36 -3.74 10.10 -39.26 -0.40 -4.14 16 4 C 0.47 5.71 7.26 36.01 0.26 5.97 16 5 O -0.51 -7.30 15.67 -18.74 -0.29 -7.59 16 6 C -0.09 -1.09 2.76 -91.87 -0.25 -1.34 16 7 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 8 C -0.11 -0.98 5.11 -26.69 -0.14 -1.12 16 9 C -0.13 -1.29 6.08 -26.61 -0.16 -1.45 16 10 C 0.11 1.36 6.43 -3.71 -0.02 1.34 16 11 N -1.01 -15.24 3.23 -113.77 -0.37 -15.61 16 12 S 2.63 53.75 4.60 -107.50 -0.49 53.25 16 13 O -0.93 -22.32 15.80 -57.54 -0.91 -23.23 16 14 O -0.96 -21.84 16.58 -57.54 -0.95 -22.79 16 15 C -0.58 -11.49 6.15 37.16 0.23 -11.27 16 16 C 0.01 0.20 1.12 -155.66 -0.17 0.03 16 17 C -0.54 -15.07 7.55 -34.44 -0.26 -15.33 16 18 H 0.09 2.72 8.06 -52.48 -0.42 2.29 16 19 C 0.10 2.89 5.46 -17.82 -0.10 2.79 16 20 N -0.87 -26.56 13.96 55.43 0.77 -25.79 16 21 Si 0.88 21.29 24.98 -169.99 -4.25 17.04 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.26 -5.73 5.46 56.52 0.31 -5.42 16 25 C -0.17 -3.58 9.88 -26.73 -0.26 -3.84 16 26 C -0.19 -3.96 7.54 -26.73 -0.20 -4.16 16 27 C 0.13 1.81 5.05 -3.93 -0.02 1.79 16 28 H 0.07 0.39 8.14 -51.92 -0.42 -0.04 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.10 1.36 6.86 -51.93 -0.36 1.01 16 39 H 0.12 2.27 6.56 -51.92 -0.34 1.93 16 40 H 0.11 1.72 7.95 -51.93 -0.41 1.31 16 41 H 0.27 7.58 8.31 -40.82 -0.34 7.25 16 42 H 0.08 1.37 8.08 -51.93 -0.42 0.95 16 43 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 44 H 0.09 2.02 7.01 -51.93 -0.36 1.65 16 45 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 46 H 0.10 1.54 6.85 -51.93 -0.36 1.18 16 47 H 0.08 0.90 7.94 -51.93 -0.41 0.49 16 LS Contribution 384.86 15.07 5.80 5.80 Total: -1.00 -35.32 384.86 -9.38 -44.71 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -7.80 Total: 4.68 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: -0.49 Total: -26.34 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.41 Total: -41.39 kcal Atomic # 8 Polarization: -55.19 SS G_CDS: -2.55 Total: -57.75 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.25 Total: 17.04 kcal Atomic # 16 Polarization: 53.75 SS G_CDS: -0.49 Total: 53.25 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.32 -9.38 -44.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331934747.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.536 kcal (2) G-P(sol) polarization free energy of solvation -35.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds