Wall clock time and date at job start Wed Apr 1 2020 03:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.45200 * 109.47299 * 2 1 4 4 C 1.34233 * 116.99919 * 179.97438 * 3 2 1 5 5 O 1.20820 * 120.00277 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99604 * 180.02562 * 4 3 2 7 7 H 1.08997 * 109.49788 * 299.93166 * 6 4 3 8 8 C 1.53036 * 109.49655 * 60.00112 * 6 4 3 9 9 C 1.53042 * 109.53779 * 181.31466 * 8 6 4 10 10 C 1.53190 * 109.31292 * 298.63575 * 9 8 6 11 11 N 1.46927 * 108.77918 * 54.63066 * 10 9 8 12 12 S 1.65605 * 120.63121 * 126.36596 * 11 10 9 13 13 O 1.42097 * 104.27523 * 333.93635 * 12 11 10 14 14 O 1.42100 * 104.27762 * 206.07520 * 12 11 10 15 15 C 1.81402 * 104.44503 * 90.00787 * 12 11 10 16 16 C 1.52999 * 109.46768 * 172.69593 * 15 12 11 17 17 C 1.50701 * 115.55247 * 39.93946 * 16 15 12 18 18 H 1.08006 * 119.99544 * 272.15159 * 17 16 15 19 19 C 1.37872 * 120.00368 * 92.14906 * 17 16 15 20 20 N 1.31517 * 120.00182 * 173.94065 * 19 17 16 21 21 Si 1.86805 * 119.99759 * 353.94074 * 19 17 16 22 22 H 1.48502 * 109.46857 * 93.63019 * 21 19 17 23 23 H 1.48504 * 109.46811 * 213.62683 * 21 19 17 24 24 H 1.48491 * 109.47337 * 333.62788 * 21 19 17 25 25 C 1.53000 * 117.49835 * 254.22714 * 16 15 12 26 26 C 1.53003 * 60.00091 * 252.51173 * 25 16 15 27 27 C 1.46928 * 118.73737 * 306.65077 * 11 10 9 28 28 H 1.09009 * 109.47364 * 59.99918 * 1 2 3 29 29 H 1.08998 * 109.47701 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47406 * 299.99832 * 1 2 3 31 31 H 1.09010 * 109.47271 * 240.00085 * 2 1 3 32 32 H 1.08997 * 109.47519 * 120.00409 * 2 1 3 33 33 H 1.09001 * 109.46396 * 61.29546 * 8 6 4 34 34 H 1.09000 * 109.45050 * 301.32348 * 8 6 4 35 35 H 1.08998 * 109.50212 * 178.68493 * 9 8 6 36 36 H 1.09003 * 109.49791 * 58.58724 * 9 8 6 37 37 H 1.09000 * 109.58809 * 294.84482 * 10 9 8 38 38 H 1.09001 * 109.70778 * 174.49387 * 10 9 8 39 39 H 1.09008 * 109.46758 * 292.69041 * 15 12 11 40 40 H 1.08992 * 109.47402 * 52.69453 * 15 12 11 41 41 H 0.96995 * 120.00131 * 180.02562 * 20 19 17 42 42 H 1.09004 * 117.49598 * 359.97438 * 25 16 15 43 43 H 1.08994 * 117.49855 * 145.02039 * 25 16 15 44 44 H 1.08997 * 117.49545 * 252.50545 * 26 25 16 45 45 H 1.09000 * 117.49762 * 107.48524 * 26 25 16 46 46 H 1.09001 * 109.58740 * 173.14191 * 27 11 10 47 47 H 1.08999 * 109.58390 * 293.56121 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0012 7 1 3.5863 3.4698 -0.8892 8 6 3.4489 3.6847 1.2506 9 6 4.0067 5.1098 1.2357 10 6 5.5375 5.0549 1.2543 11 7 5.9943 4.2164 0.1376 12 16 7.1005 4.7919 -0.9522 13 8 6.9270 6.2018 -0.9162 14 8 6.8424 4.0520 -2.1375 15 6 8.7087 4.3303 -0.2512 16 6 9.8146 4.6484 -1.2595 17 6 9.6516 5.9410 -2.0169 18 1 9.0858 5.9601 -2.9368 19 6 10.2244 7.0991 -1.5357 20 7 10.1845 8.2001 -2.2539 21 14 11.0572 7.1042 0.1364 22 1 12.5091 6.8424 -0.0329 23 1 10.8648 8.4282 0.7811 24 1 10.4597 6.0464 0.9903 25 6 10.4569 3.4724 -1.9980 26 6 11.2379 4.2100 -0.9086 27 6 5.4463 2.8599 0.0026 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.8042 3.1650 2.1404 34 1 2.3596 3.7212 1.2619 35 1 3.6513 5.6488 2.1139 36 1 3.6719 5.6221 0.3337 37 1 5.8763 4.6246 2.1967 38 1 5.9427 6.0610 1.1454 39 1 8.8803 4.8935 0.6661 40 1 8.7155 3.2633 -0.0291 41 1 10.5879 9.0148 -1.9155 42 1 10.0918 2.4721 -1.7653 43 1 10.7614 3.6335 -3.0321 44 1 12.0563 4.8562 -1.2260 45 1 11.3863 3.6950 0.0405 46 1 5.7893 2.4187 -0.9333 47 1 5.7776 2.2469 0.8408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331934747.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:08 Heat of formation + Delta-G solvation = -161.333854 kcal Electronic energy + Delta-G solvation = -29788.395400 eV Core-core repulsion = 25677.182243 eV Total energy + Delta-G solvation = -4111.213157 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.79363 -39.34707 -38.84221 -38.03194 -37.64332 -36.74562 -34.33609 -33.87348 -32.63021 -32.13274 -30.11823 -27.66095 -26.09094 -25.56754 -23.81195 -23.37054 -22.43202 -21.40834 -21.12047 -19.81240 -18.96475 -18.54605 -18.39298 -17.62834 -17.31800 -17.17023 -16.96585 -16.51845 -15.81682 -15.64083 -15.40198 -15.22340 -14.93532 -14.84151 -14.61209 -14.38806 -14.36520 -14.19230 -13.87958 -13.56700 -13.18362 -13.00232 -12.94620 -12.89841 -12.87802 -12.65845 -12.63592 -12.43822 -12.29133 -12.06271 -12.02771 -11.94892 -11.85331 -11.68411 -11.52638 -11.49079 -11.31713 -10.94404 -10.73453 -10.36286 -9.92129 -8.36864 -6.53264 -0.59863 1.08454 1.32544 1.35251 1.47434 1.54373 2.00106 2.32983 2.93285 3.01641 3.13160 3.35640 3.37044 3.67955 3.73651 3.77588 4.00982 4.02603 4.05889 4.09659 4.17670 4.25998 4.31270 4.34933 4.37573 4.43144 4.52871 4.61549 4.75005 4.76409 4.83447 4.85156 4.87765 4.93697 4.94596 4.98167 5.11787 5.14734 5.15106 5.19968 5.36862 5.42650 5.44548 5.60581 5.65339 6.13392 6.60407 6.64927 7.23770 8.79799 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021296 B = 0.003143 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.472173 B = 8905.206836 C = 9439.387449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 O -0.356 6.356 4 C 0.478 3.522 5 O -0.532 6.532 6 C -0.097 4.097 7 H 0.109 0.891 8 C -0.099 4.099 9 C -0.128 4.128 10 C 0.098 3.902 11 N -1.003 6.003 12 S 2.622 3.378 13 O -0.981 6.981 14 O -1.000 7.000 15 C -0.574 4.574 16 C -0.029 4.029 17 C -0.538 4.538 18 H 0.027 0.973 19 C 0.038 3.962 20 N -0.933 5.933 21 Si 0.932 3.068 22 H -0.260 1.260 23 H -0.292 1.292 24 H -0.216 1.216 25 C -0.169 4.169 26 C -0.172 4.172 27 C 0.130 3.870 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.057 0.943 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.139 0.861 40 H 0.153 0.847 41 H 0.270 0.730 42 H 0.113 0.887 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.117 0.883 46 H 0.082 0.918 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.609 -15.314 14.709 26.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.273 6.273 4 C 0.322 3.678 5 O -0.422 6.422 6 C -0.118 4.118 7 H 0.127 0.873 8 C -0.136 4.136 9 C -0.167 4.167 10 C -0.026 4.026 11 N -0.842 5.842 12 S 2.721 3.279 13 O -0.971 6.971 14 O -0.990 6.990 15 C -0.706 4.706 16 C -0.031 4.031 17 C -0.575 4.575 18 H 0.045 0.955 19 C -0.163 4.163 20 N -0.570 5.570 21 Si 0.754 3.246 22 H -0.184 1.184 23 H -0.219 1.219 24 H -0.138 1.138 25 C -0.206 4.206 26 C -0.210 4.210 27 C 0.004 3.996 28 H 0.084 0.916 29 H 0.118 0.882 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.130 0.870 36 H 0.076 0.924 37 H 0.120 0.880 38 H 0.101 0.899 39 H 0.157 0.843 40 H 0.171 0.829 41 H 0.079 0.921 42 H 0.131 0.869 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.136 0.864 46 H 0.100 0.900 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.627 -14.966 13.885 26.330 hybrid contribution 0.977 0.291 -0.002 1.019 sum -15.651 -14.675 13.883 25.555 Atomic orbital electron populations 1.21823 0.90417 1.04351 1.03746 1.23330 0.97089 0.79121 1.02696 1.86507 1.23511 1.33817 1.83441 1.23624 0.80923 0.92062 0.71224 1.90662 1.61035 1.43904 1.46571 1.21376 0.95935 0.90168 1.04279 0.87274 1.21499 1.02360 0.95060 0.94701 1.21900 0.93845 0.96778 1.04151 1.21858 0.96528 0.94992 0.89239 1.57869 1.57617 1.23790 1.44891 1.04395 0.76339 0.73291 0.73877 1.93500 1.85663 1.31654 1.86279 1.93428 1.84901 1.74247 1.46437 1.30180 1.18164 1.12147 1.10102 1.18714 0.91824 0.94886 0.97721 1.20507 1.36391 0.92074 1.08557 0.95453 1.25961 0.94940 0.94202 1.01235 1.70049 1.44972 1.02122 1.39854 0.86009 0.79870 0.78635 0.80064 1.18439 1.21898 1.13810 1.23074 1.04460 0.96089 0.96956 1.23048 0.94109 1.03560 1.00316 1.21198 0.91633 0.82454 1.04314 0.91595 0.88250 0.90911 0.91667 0.90764 0.89426 0.88597 0.86955 0.92393 0.87957 0.89889 0.84282 0.82945 0.92064 0.86866 0.90445 0.90332 0.86443 0.89975 0.88279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.29 71.98 0.74 -0.57 16 2 C 0.05 0.76 6.19 71.98 0.45 1.20 16 3 O -0.36 -6.88 10.10 -51.44 -0.52 -7.39 16 4 C 0.48 10.84 7.26 71.24 0.52 11.36 16 5 O -0.53 -14.68 15.67 21.98 0.34 -14.34 16 6 C -0.10 -2.09 2.76 -11.61 -0.03 -2.12 16 7 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 8 C -0.10 -1.51 5.11 30.62 0.16 -1.35 16 9 C -0.13 -2.21 6.08 30.67 0.19 -2.03 16 10 C 0.10 2.18 6.43 86.36 0.56 2.74 16 11 N -1.00 -28.81 3.23 -513.84 -1.66 -30.47 16 12 S 2.62 108.58 4.60 -56.49 -0.26 108.32 16 13 O -0.98 -49.32 15.80 -127.65 -2.02 -51.34 16 14 O -1.00 -47.32 16.58 -127.65 -2.12 -49.44 16 15 C -0.57 -21.02 6.15 71.98 0.44 -20.57 16 16 C -0.03 -1.31 1.12 -52.93 -0.06 -1.37 16 17 C -0.54 -31.47 7.55 25.60 0.19 -31.27 16 18 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 19 C 0.04 2.22 5.46 84.65 0.46 2.68 16 20 N -0.93 -59.98 13.96 21.45 0.30 -59.68 16 21 Si 0.93 42.87 24.98 68.60 1.71 44.58 16 22 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 23 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 24 H -0.22 -8.38 5.46 99.48 0.54 -7.83 16 25 C -0.17 -6.64 9.88 30.60 0.30 -6.34 16 26 C -0.17 -6.60 7.54 30.60 0.23 -6.37 16 27 C 0.13 3.29 5.05 86.22 0.44 3.72 16 28 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.10 0.50 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 1.03 8.14 -2.38 -0.02 1.02 16 32 H 0.07 1.04 8.13 -2.39 -0.02 1.02 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.10 1.18 8.09 -2.39 -0.02 1.16 16 35 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.08 2.18 6.86 -2.39 -0.02 2.16 16 39 H 0.14 4.59 6.56 -2.39 -0.02 4.58 16 40 H 0.15 4.15 7.95 -2.39 -0.02 4.13 16 41 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 42 H 0.11 3.61 8.08 -2.38 -0.02 3.59 16 43 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 44 H 0.08 3.23 7.01 -2.39 -0.02 3.21 16 45 H 0.12 3.55 8.14 -2.39 -0.02 3.53 16 46 H 0.08 2.44 6.85 -2.39 -0.02 2.42 16 47 H 0.10 2.05 7.94 -2.39 -0.02 2.04 16 Total: -1.00 -83.91 384.86 1.15 -82.76 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: 0.79 Total: 27.29 kcal Atomic # 6 Polarization: -54.87 SS G_CDS: 4.58 Total: -50.29 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -1.36 Total: -90.15 kcal Atomic # 8 Polarization: -118.20 SS G_CDS: -4.31 Total: -122.51 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.71 Total: 44.58 kcal Atomic # 16 Polarization: 108.58 SS G_CDS: -0.26 Total: 108.32 kcal Total: -83.91 1.15 -82.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331934747.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.573 kcal (2) G-P(sol) polarization free energy of solvation -83.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds