Wall clock time and date at job start Wed Apr 1 2020 03:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.47233 * 2 1 4 4 C 1.34225 * 116.99966 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00262 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99904 * 179.97438 * 4 3 2 7 7 C 1.53041 * 109.46167 * 180.02562 * 6 4 3 8 8 C 1.53188 * 109.31663 * 181.39171 * 7 6 4 9 9 N 1.46928 * 108.77258 * 305.36607 * 8 7 6 10 10 S 1.65603 * 120.63026 * 233.58583 * 9 8 7 11 11 O 1.42097 * 104.27438 * 333.92754 * 10 9 8 12 12 O 1.42101 * 104.27726 * 206.06938 * 10 9 8 13 13 C 1.81405 * 104.45044 * 89.99997 * 10 9 8 14 14 C 1.52997 * 109.46933 * 187.93012 * 13 10 9 15 15 C 1.50696 * 115.56279 * 320.20145 * 14 13 10 16 16 H 1.08004 * 119.99599 * 99.40773 * 15 14 13 17 17 C 1.37874 * 120.00247 * 279.41216 * 15 14 13 18 18 N 1.31511 * 120.00112 * 6.33731 * 17 15 14 19 19 Si 1.86804 * 119.99828 * 186.34431 * 17 15 14 20 20 H 1.48499 * 109.47298 * 59.99901 * 19 17 15 21 21 H 1.48504 * 109.46807 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47144 * 299.99218 * 19 17 15 23 23 C 1.52996 * 117.50013 * 105.89959 * 14 13 10 24 24 C 1.52994 * 60.00305 * 107.48226 * 23 14 13 25 25 C 1.46924 * 118.74034 * 53.85830 * 9 8 7 26 26 C 1.53030 * 109.46244 * 300.06930 * 6 4 3 27 27 H 1.09002 * 109.47592 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47003 * 300.00058 * 1 2 3 29 29 H 1.08997 * 109.47506 * 59.99672 * 1 2 3 30 30 H 1.09002 * 109.47003 * 239.99942 * 2 1 3 31 31 H 1.09002 * 109.47396 * 119.99833 * 2 1 3 32 32 H 1.09000 * 109.45517 * 60.03324 * 6 4 3 33 33 H 1.09004 * 109.49907 * 61.43481 * 7 6 4 34 34 H 1.09007 * 109.52210 * 301.35789 * 7 6 4 35 35 H 1.08998 * 109.58837 * 185.58115 * 8 7 6 36 36 H 1.08997 * 109.70682 * 65.21939 * 8 7 6 37 37 H 1.08999 * 109.46748 * 67.92725 * 13 10 9 38 38 H 1.08999 * 109.46845 * 307.93059 * 13 10 9 39 39 H 0.96999 * 119.99942 * 174.97035 * 18 17 15 40 40 H 1.09005 * 117.50001 * 214.97815 * 23 14 13 41 41 H 1.09009 * 117.50045 * 359.97438 * 23 14 13 42 42 H 1.08995 * 117.50411 * 252.50507 * 24 23 14 43 43 H 1.09005 * 117.49529 * 107.48658 * 24 23 14 44 44 H 1.08997 * 109.58897 * 65.92826 * 25 9 8 45 45 H 1.08998 * 109.58894 * 186.35337 * 25 9 8 46 46 H 1.08997 * 109.50078 * 298.56492 * 26 6 4 47 47 H 1.09007 * 109.49617 * 58.63090 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9374 -0.0012 7 6 5.4490 2.8570 -0.0023 8 6 6.0309 4.2737 0.0322 9 7 5.4663 5.0441 -1.0843 10 16 6.4573 5.8228 -2.1585 11 8 7.6456 6.0733 -1.4207 12 8 5.6642 6.8921 -2.6553 13 6 6.7633 4.5985 -3.4616 14 6 7.8295 5.1307 -4.4212 15 6 7.7318 6.5974 -4.7530 16 1 8.3657 7.3093 -4.2453 17 6 6.8331 7.0306 -5.7048 18 7 5.9758 6.1847 -6.2329 19 14 6.8336 8.8190 -6.2442 20 1 8.1588 9.1622 -6.8196 21 1 5.7802 9.0268 -7.2701 22 1 6.5622 9.6896 -5.0722 23 6 9.2286 4.5180 -4.3328 24 6 8.3231 4.1888 -5.5213 25 6 4.0057 5.1155 -1.2260 26 6 3.4471 3.6845 -1.2499 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.5854 3.4694 0.8892 33 1 5.7858 2.3472 -0.9050 34 1 5.7853 2.3041 0.8748 35 1 7.1152 4.2258 -0.0684 36 1 5.7722 4.7544 0.9755 37 1 5.8399 4.4138 -4.0106 38 1 7.1108 3.6684 -3.0119 39 1 5.2963 6.5031 -6.8475 40 1 10.0785 5.1758 -4.5146 41 1 9.3897 3.7360 -3.5907 42 1 7.8884 3.1901 -5.5614 43 1 8.5773 4.6302 -6.4850 44 1 3.5830 5.6621 -0.3830 45 1 3.7532 5.6233 -2.1569 46 1 3.8030 3.1668 -2.1405 47 1 2.3577 3.7205 -1.2610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332015920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:43 Heat of formation + Delta-G solvation = -143.506381 kcal Electronic energy + Delta-G solvation = -29855.932232 eV Core-core repulsion = 25745.492132 eV Total energy + Delta-G solvation = -4110.440099 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.84924 -38.31475 -36.74147 -36.69676 -36.16016 -34.90027 -32.89342 -32.05988 -31.78315 -31.07221 -28.13350 -25.98179 -25.42170 -23.57813 -23.21957 -21.65668 -21.20103 -20.32471 -19.35265 -18.34295 -17.88211 -17.16581 -16.79069 -16.47398 -16.19866 -15.59102 -15.09153 -14.71270 -14.63776 -14.22726 -14.12873 -13.95253 -13.77855 -13.62291 -13.33049 -13.08126 -13.06351 -12.45670 -12.24471 -12.18126 -12.15038 -11.86856 -11.77180 -11.36703 -11.25872 -11.10324 -11.05565 -11.00055 -10.84914 -10.80271 -10.71552 -10.60462 -10.53168 -10.39013 -10.31236 -10.09715 -9.68656 -8.99065 -8.74856 -8.54750 -8.08269 -6.15700 -4.30782 1.17066 2.03217 2.43866 3.35217 3.37313 3.44512 3.46945 4.32462 4.40515 4.53916 4.55585 4.62091 4.67038 4.78990 4.90333 4.94777 4.98318 5.09012 5.13685 5.14745 5.27602 5.31590 5.34798 5.44400 5.56912 5.60296 5.64013 5.66603 5.74999 5.79860 5.85606 5.97801 6.03594 6.15745 6.23749 6.28905 6.34667 6.40739 6.64432 6.70465 6.88471 6.97841 7.19121 7.38250 7.57531 7.79400 8.20356 8.78646 9.46736 10.91972 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015652 B = 0.003218 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.442626 B = 8698.052235 C = 8880.606761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.357 6.357 4 C 0.467 3.533 5 O -0.508 6.508 6 C -0.075 4.075 7 C -0.122 4.122 8 C 0.123 3.877 9 N -1.017 6.017 10 S 2.623 3.377 11 O -0.971 6.971 12 O -0.939 6.939 13 C -0.559 4.559 14 C 0.054 3.946 15 C -0.547 4.547 16 H 0.069 0.931 17 C 0.099 3.901 18 N -0.866 5.866 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.267 1.267 23 C -0.203 4.203 24 C -0.150 4.150 25 C 0.124 3.876 26 C -0.129 4.129 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.128 0.872 38 H 0.093 0.907 39 H 0.266 0.734 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.071 0.929 45 H 0.101 0.899 46 H 0.076 0.924 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.065 -10.539 12.759 19.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.274 6.274 4 C 0.309 3.691 5 O -0.395 6.395 6 C -0.094 4.094 7 C -0.161 4.161 8 C -0.003 4.003 9 N -0.853 5.853 10 S 2.721 3.279 11 O -0.962 6.962 12 O -0.929 6.929 13 C -0.691 4.691 14 C 0.052 3.948 15 C -0.584 4.584 16 H 0.087 0.913 17 C -0.108 4.108 18 N -0.500 5.500 19 Si 0.717 3.283 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.191 1.191 23 C -0.241 4.241 24 C -0.189 4.189 25 C -0.001 4.001 26 C -0.168 4.168 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.129 0.871 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.088 0.912 37 H 0.146 0.854 38 H 0.112 0.888 39 H 0.075 0.925 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.102 0.898 44 H 0.089 0.911 45 H 0.119 0.881 46 H 0.095 0.905 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.711 -9.986 12.707 18.854 hybrid contribution -0.275 -0.214 -0.657 0.744 sum -9.986 -10.200 12.050 18.681 Atomic orbital electron populations 1.21805 0.92588 1.02942 1.03626 1.23023 0.95411 0.80360 1.02558 1.86516 1.24709 1.32249 1.83953 1.23903 0.80430 0.92825 0.71897 1.90664 1.60433 1.43216 1.45173 1.21073 0.96786 0.89345 1.02240 1.21908 0.91945 0.97897 1.04329 1.21326 0.99020 0.89793 0.90141 1.58423 1.16202 1.68792 1.41858 1.04766 0.73068 0.76007 0.74042 1.93462 1.48107 1.84157 1.70484 1.93521 1.69002 1.49925 1.80498 1.30005 1.09900 1.13815 1.15364 1.18149 0.87492 0.93917 0.95227 1.20593 1.24007 0.89588 1.24255 0.91284 1.24890 0.94168 0.97765 0.94025 1.69926 1.15975 1.34588 1.29486 0.86654 0.77792 0.85076 0.78796 1.19972 1.20951 1.19140 1.23094 0.95924 1.03244 1.01787 1.22573 1.03613 0.98635 0.94041 1.21420 0.79587 0.95223 1.03903 1.22064 1.01706 0.96643 0.96379 0.90305 0.91493 0.91311 0.91208 0.91358 0.87108 0.90321 0.89946 0.88558 0.91166 0.85414 0.88807 0.92468 0.89724 0.91244 0.91649 0.89760 0.91053 0.88068 0.90539 0.89466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.29 37.15 0.38 -0.52 16 2 C 0.06 0.51 6.19 37.15 0.23 0.74 16 3 O -0.36 -3.75 10.10 -39.25 -0.40 -4.15 16 4 C 0.47 5.46 7.26 36.01 0.26 5.72 16 5 O -0.51 -7.25 15.73 -18.75 -0.29 -7.55 16 6 C -0.08 -0.78 2.59 -91.73 -0.24 -1.01 16 7 C -0.12 -1.36 4.65 -26.61 -0.12 -1.48 16 8 C 0.12 1.55 6.31 -3.71 -0.02 1.52 16 9 N -1.02 -15.60 3.21 -113.27 -0.36 -15.96 16 10 S 2.62 54.99 4.54 -107.50 -0.49 54.51 16 11 O -0.97 -22.29 16.72 -57.54 -0.96 -23.25 16 12 O -0.94 -22.87 15.97 -57.54 -0.92 -23.79 16 13 C -0.56 -11.78 6.29 37.16 0.23 -11.54 16 14 C 0.05 1.32 1.57 -155.66 -0.24 1.08 16 15 C -0.55 -15.00 6.95 -34.44 -0.24 -15.24 16 16 H 0.07 1.94 7.82 -52.48 -0.41 1.53 16 17 C 0.10 2.72 5.42 -17.82 -0.10 2.62 16 18 N -0.87 -23.79 13.12 55.43 0.73 -23.06 16 19 Si 0.89 21.74 29.55 -169.99 -5.02 16.72 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 23 C -0.20 -4.44 9.88 -26.74 -0.26 -4.70 16 24 C -0.15 -3.42 9.72 -26.73 -0.26 -3.68 16 25 C 0.12 1.60 6.34 -3.48 -0.02 1.58 16 26 C -0.13 -1.39 5.31 -26.39 -0.14 -1.53 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 31 H 0.07 0.56 8.13 -51.93 -0.42 0.13 16 32 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 0.97 8.13 -51.93 -0.42 0.55 16 34 H 0.08 0.82 8.07 -51.92 -0.42 0.41 16 35 H 0.10 1.27 7.10 -51.93 -0.37 0.90 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.13 2.74 8.14 -51.92 -0.42 2.31 16 38 H 0.09 1.67 7.95 -51.92 -0.41 1.26 16 39 H 0.27 6.98 8.32 -40.82 -0.34 6.64 16 40 H 0.08 1.83 8.14 -51.93 -0.42 1.40 16 41 H 0.07 1.34 8.08 -51.92 -0.42 0.92 16 42 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.10 1.45 7.09 -51.93 -0.37 1.08 16 46 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.09 0.79 8.08 -51.92 -0.42 0.37 16 LS Contribution 395.50 15.07 5.96 5.96 Total: -1.00 -33.76 395.50 -10.17 -43.94 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -7.87 Total: 3.09 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: -0.54 Total: -26.45 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.36 Total: -39.02 kcal Atomic # 8 Polarization: -56.16 SS G_CDS: -2.57 Total: -58.73 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 54.99 SS G_CDS: -0.49 Total: 54.51 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.76 -10.17 -43.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332015920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.570 kcal (2) G-P(sol) polarization free energy of solvation -33.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds