Wall clock time and date at job start Wed Apr 1 2020 03:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.47233 * 2 1 4 4 C 1.34225 * 116.99966 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00262 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99904 * 179.97438 * 4 3 2 7 7 C 1.53041 * 109.46167 * 180.02562 * 6 4 3 8 8 C 1.53188 * 109.31663 * 181.39171 * 7 6 4 9 9 N 1.46928 * 108.77258 * 305.36607 * 8 7 6 10 10 S 1.65603 * 120.63026 * 233.58583 * 9 8 7 11 11 O 1.42097 * 104.27438 * 333.92754 * 10 9 8 12 12 O 1.42101 * 104.27726 * 206.06938 * 10 9 8 13 13 C 1.81405 * 104.45044 * 89.99997 * 10 9 8 14 14 C 1.52997 * 109.46933 * 187.93012 * 13 10 9 15 15 C 1.50696 * 115.56279 * 320.20145 * 14 13 10 16 16 H 1.08004 * 119.99599 * 99.40773 * 15 14 13 17 17 C 1.37874 * 120.00247 * 279.41216 * 15 14 13 18 18 N 1.31511 * 120.00112 * 6.33731 * 17 15 14 19 19 Si 1.86804 * 119.99828 * 186.34431 * 17 15 14 20 20 H 1.48499 * 109.47298 * 59.99901 * 19 17 15 21 21 H 1.48504 * 109.46807 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47144 * 299.99218 * 19 17 15 23 23 C 1.52996 * 117.50013 * 105.89959 * 14 13 10 24 24 C 1.52994 * 60.00305 * 107.48226 * 23 14 13 25 25 C 1.46924 * 118.74034 * 53.85830 * 9 8 7 26 26 C 1.53030 * 109.46244 * 300.06930 * 6 4 3 27 27 H 1.09002 * 109.47592 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47003 * 300.00058 * 1 2 3 29 29 H 1.08997 * 109.47506 * 59.99672 * 1 2 3 30 30 H 1.09002 * 109.47003 * 239.99942 * 2 1 3 31 31 H 1.09002 * 109.47396 * 119.99833 * 2 1 3 32 32 H 1.09000 * 109.45517 * 60.03324 * 6 4 3 33 33 H 1.09004 * 109.49907 * 61.43481 * 7 6 4 34 34 H 1.09007 * 109.52210 * 301.35789 * 7 6 4 35 35 H 1.08998 * 109.58837 * 185.58115 * 8 7 6 36 36 H 1.08997 * 109.70682 * 65.21939 * 8 7 6 37 37 H 1.08999 * 109.46748 * 67.92725 * 13 10 9 38 38 H 1.08999 * 109.46845 * 307.93059 * 13 10 9 39 39 H 0.96999 * 119.99942 * 174.97035 * 18 17 15 40 40 H 1.09005 * 117.50001 * 214.97815 * 23 14 13 41 41 H 1.09009 * 117.50045 * 359.97438 * 23 14 13 42 42 H 1.08995 * 117.50411 * 252.50507 * 24 23 14 43 43 H 1.09005 * 117.49529 * 107.48658 * 24 23 14 44 44 H 1.08997 * 109.58897 * 65.92826 * 25 9 8 45 45 H 1.08998 * 109.58894 * 186.35337 * 25 9 8 46 46 H 1.08997 * 109.50078 * 298.56492 * 26 6 4 47 47 H 1.09007 * 109.49617 * 58.63090 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9374 -0.0012 7 6 5.4490 2.8570 -0.0023 8 6 6.0309 4.2737 0.0322 9 7 5.4663 5.0441 -1.0843 10 16 6.4573 5.8228 -2.1585 11 8 7.6456 6.0733 -1.4207 12 8 5.6642 6.8921 -2.6553 13 6 6.7633 4.5985 -3.4616 14 6 7.8295 5.1307 -4.4212 15 6 7.7318 6.5974 -4.7530 16 1 8.3657 7.3093 -4.2453 17 6 6.8331 7.0306 -5.7048 18 7 5.9758 6.1847 -6.2329 19 14 6.8336 8.8190 -6.2442 20 1 8.1588 9.1622 -6.8196 21 1 5.7802 9.0268 -7.2701 22 1 6.5622 9.6896 -5.0722 23 6 9.2286 4.5180 -4.3328 24 6 8.3231 4.1888 -5.5213 25 6 4.0057 5.1155 -1.2260 26 6 3.4471 3.6845 -1.2499 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.5854 3.4694 0.8892 33 1 5.7858 2.3472 -0.9050 34 1 5.7853 2.3041 0.8748 35 1 7.1152 4.2258 -0.0684 36 1 5.7722 4.7544 0.9755 37 1 5.8399 4.4138 -4.0106 38 1 7.1108 3.6684 -3.0119 39 1 5.2963 6.5031 -6.8475 40 1 10.0785 5.1758 -4.5146 41 1 9.3897 3.7360 -3.5907 42 1 7.8884 3.1901 -5.5614 43 1 8.5773 4.6302 -6.4850 44 1 3.5830 5.6621 -0.3830 45 1 3.7532 5.6233 -2.1569 46 1 3.8030 3.1668 -2.1405 47 1 2.3577 3.7205 -1.2610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332015920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:42 Heat of formation + Delta-G solvation = -164.590515 kcal Electronic energy + Delta-G solvation = -29856.846508 eV Core-core repulsion = 25745.492132 eV Total energy + Delta-G solvation = -4111.354376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.72608 -39.28411 -38.53362 -37.89293 -37.62459 -36.64427 -34.12434 -33.86895 -32.45074 -32.01676 -29.84397 -27.54992 -26.85469 -24.44448 -24.00359 -22.98564 -22.59091 -21.53878 -20.92826 -19.72555 -18.84575 -18.55381 -18.25300 -17.61093 -17.19723 -17.00921 -16.85282 -16.51791 -15.64660 -15.52085 -15.42988 -15.16947 -14.89723 -14.75270 -14.59176 -14.28687 -13.91756 -13.73463 -13.65897 -13.47103 -13.29371 -13.04066 -12.89209 -12.88365 -12.78739 -12.68982 -12.52875 -12.42226 -12.39128 -12.21339 -12.09225 -11.89616 -11.72349 -11.65540 -11.57922 -11.49495 -11.28203 -10.85638 -10.53596 -10.11691 -9.77180 -8.22682 -6.41046 -0.42945 1.14928 1.37194 1.41210 1.46759 1.67055 2.06492 2.40071 3.07948 3.14020 3.31055 3.47382 3.52299 3.67682 3.75737 3.90766 4.02203 4.08876 4.10475 4.14799 4.27350 4.33028 4.36714 4.38747 4.58776 4.59669 4.61085 4.74784 4.77281 4.80916 4.86229 4.88792 4.94331 4.94927 4.96487 5.11229 5.16353 5.17558 5.23999 5.28519 5.38699 5.48461 5.58015 5.69214 5.75889 6.21769 6.68676 6.71777 7.37186 8.84273 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015652 B = 0.003218 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.442626 B = 8698.052235 C = 8880.606761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 O -0.358 6.358 4 C 0.470 3.530 5 O -0.538 6.538 6 C -0.072 4.072 7 C -0.117 4.117 8 C 0.117 3.883 9 N -1.010 6.010 10 S 2.633 3.367 11 O -0.998 6.998 12 O -0.982 6.982 13 C -0.556 4.556 14 C 0.020 3.980 15 C -0.563 4.563 16 H 0.049 0.951 17 C 0.062 3.938 18 N -0.882 5.882 19 Si 0.926 3.074 20 H -0.265 1.265 21 H -0.271 1.271 22 H -0.277 1.277 23 C -0.189 4.189 24 C -0.149 4.149 25 C 0.118 3.882 26 C -0.122 4.122 27 H 0.097 0.903 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.141 0.859 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.267 0.733 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.100 0.900 45 H 0.082 0.918 46 H 0.062 0.938 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.248 -11.661 14.321 21.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.274 6.274 4 C 0.314 3.686 5 O -0.428 6.428 6 C -0.091 4.091 7 C -0.156 4.156 8 C -0.008 4.008 9 N -0.848 5.848 10 S 2.731 3.269 11 O -0.988 6.988 12 O -0.972 6.972 13 C -0.688 4.688 14 C 0.018 3.982 15 C -0.600 4.600 16 H 0.067 0.933 17 C -0.144 4.144 18 N -0.516 5.516 19 Si 0.750 3.250 20 H -0.190 1.190 21 H -0.195 1.195 22 H -0.202 1.202 23 C -0.226 4.226 24 C -0.187 4.187 25 C -0.007 4.007 26 C -0.161 4.161 27 H 0.116 0.884 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.159 0.841 33 H 0.082 0.918 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.138 0.862 38 H 0.143 0.857 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.117 0.883 42 H 0.101 0.899 43 H 0.083 0.917 44 H 0.118 0.882 45 H 0.100 0.900 46 H 0.081 0.919 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.894 -11.101 14.252 21.096 hybrid contribution 0.062 0.070 -1.072 1.076 sum -10.832 -11.031 13.180 20.316 Atomic orbital electron populations 1.21818 0.90512 1.04256 1.03772 1.23266 0.97048 0.79428 1.02390 1.86515 1.23997 1.33446 1.83484 1.24106 0.80626 0.92888 0.70972 1.90656 1.61140 1.44253 1.46747 1.21104 0.96053 0.88820 1.03099 1.21852 0.92655 0.96747 1.04378 1.21608 0.98735 0.90451 0.89979 1.57983 1.16782 1.68767 1.41295 1.04098 0.72724 0.75899 0.74135 1.93417 1.49680 1.84845 1.70870 1.93460 1.69804 1.52399 1.81562 1.29909 1.08641 1.15223 1.14987 1.18299 0.89930 0.92880 0.97106 1.20742 1.23697 0.91277 1.24291 0.93271 1.25420 0.94180 1.00475 0.94278 1.69965 1.16291 1.35472 1.29905 0.86105 0.78567 0.81876 0.78403 1.19005 1.19511 1.20236 1.23175 0.94586 1.03279 1.01600 1.22514 1.04028 0.98967 0.93235 1.21663 0.77964 0.96857 1.04222 1.22004 1.02906 0.94999 0.96205 0.88442 0.90983 0.91461 0.91869 0.91135 0.84106 0.91810 0.88396 0.89297 0.88362 0.86213 0.85675 0.92351 0.90061 0.88264 0.89853 0.91670 0.88193 0.90003 0.91941 0.87247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.29 71.98 0.74 -0.66 16 2 C 0.05 0.80 6.19 71.98 0.45 1.24 16 3 O -0.36 -6.72 10.10 -51.37 -0.52 -7.24 16 4 C 0.47 9.98 7.26 71.24 0.52 10.50 16 5 O -0.54 -14.60 15.73 21.96 0.35 -14.26 16 6 C -0.07 -1.27 2.59 -11.52 -0.03 -1.30 16 7 C -0.12 -2.33 4.65 30.67 0.14 -2.19 16 8 C 0.12 2.66 6.31 86.36 0.55 3.21 16 9 N -1.01 -29.56 3.21 -512.28 -1.65 -31.21 16 10 S 2.63 110.50 4.54 -56.49 -0.26 110.24 16 11 O -1.00 -45.82 16.72 -127.65 -2.13 -47.95 16 12 O -0.98 -48.84 15.97 -127.65 -2.04 -50.87 16 13 C -0.56 -23.24 6.29 71.98 0.45 -22.79 16 14 C 0.02 0.96 1.57 -52.93 -0.08 0.88 16 15 C -0.56 -31.45 6.95 25.60 0.18 -31.27 16 16 H 0.05 2.86 7.82 -2.91 -0.02 2.83 16 17 C 0.06 3.45 5.42 84.65 0.46 3.91 16 18 N -0.88 -49.00 13.12 21.45 0.28 -48.72 16 19 Si 0.93 44.82 29.55 68.60 2.03 46.84 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.28 -13.77 7.11 99.48 0.71 -13.07 16 23 C -0.19 -8.07 9.88 30.59 0.30 -7.77 16 24 C -0.15 -6.73 9.72 30.59 0.30 -6.43 16 25 C 0.12 2.83 6.34 86.51 0.55 3.38 16 26 C -0.12 -2.37 5.31 30.82 0.16 -2.20 16 27 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 31 H 0.07 1.04 8.13 -2.39 -0.02 1.02 16 32 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.06 1.47 8.13 -2.38 -0.02 1.45 16 34 H 0.10 1.68 8.07 -2.38 -0.02 1.66 16 35 H 0.09 2.19 7.10 -2.39 -0.02 2.17 16 36 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.12 5.17 8.14 -2.39 -0.02 5.15 16 38 H 0.12 4.28 7.95 -2.39 -0.02 4.26 16 39 H 0.27 14.17 8.32 -92.71 -0.77 13.40 16 40 H 0.08 3.47 8.14 -2.38 -0.02 3.45 16 41 H 0.10 3.59 8.08 -2.38 -0.02 3.57 16 42 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 43 H 0.06 3.15 8.14 -2.38 -0.02 3.14 16 44 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.08 2.32 7.09 -2.39 -0.02 2.30 16 46 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.11 1.66 8.08 -2.38 -0.02 1.64 16 Total: -1.00 -73.80 395.50 1.68 -72.12 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.94 Total: 22.55 kcal Atomic # 6 Polarization: -56.18 SS G_CDS: 4.68 Total: -51.50 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -1.37 Total: -79.93 kcal Atomic # 8 Polarization: -115.97 SS G_CDS: -4.35 Total: -120.32 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: 110.50 SS G_CDS: -0.26 Total: 110.24 kcal Total: -73.80 1.68 -72.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332015920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.471 kcal (2) G-P(sol) polarization free energy of solvation -73.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds