Wall clock time and date at job start Wed Apr 1 2020 03:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 116.99813 * 2 1 4 4 O 1.20821 * 120.00204 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99801 * 180.02562 * 3 2 1 6 6 H 1.08993 * 109.47519 * 59.99775 * 5 3 2 7 7 C 1.53002 * 109.47124 * 299.99916 * 5 3 2 8 8 C 1.52998 * 109.47168 * 300.00243 * 7 5 3 9 9 C 1.52999 * 109.47253 * 299.99732 * 8 7 5 10 10 C 1.53002 * 109.46814 * 60.00052 * 9 8 7 11 11 C 1.52998 * 109.47168 * 300.00000 * 10 9 8 12 12 H 1.09005 * 109.46893 * 299.99843 * 11 10 9 13 13 S 1.81404 * 109.47402 * 180.02562 * 11 10 9 14 14 O 1.42101 * 110.53772 * 308.37759 * 13 11 10 15 15 O 1.42091 * 110.54549 * 171.62559 * 13 11 10 16 16 N 1.65596 * 104.44956 * 59.99511 * 13 11 10 17 17 C 1.46506 * 119.99525 * 65.28214 * 16 13 11 18 18 C 1.52999 * 109.47092 * 164.32560 * 17 16 13 19 19 C 1.50702 * 115.54919 * 39.67389 * 18 17 16 20 20 H 1.08003 * 119.99940 * 265.34700 * 19 18 17 21 21 C 1.37873 * 120.00241 * 85.34800 * 19 18 17 22 22 N 1.31513 * 119.99868 * 353.50839 * 21 19 18 23 23 Si 1.86806 * 120.00343 * 173.51182 * 21 19 18 24 24 H 1.48492 * 109.47019 * 59.99758 * 23 21 19 25 25 H 1.48502 * 109.47140 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46623 * 299.99743 * 23 21 19 27 27 C 1.52998 * 117.50113 * 253.96515 * 18 17 16 28 28 C 1.52996 * 117.50097 * 185.34115 * 18 17 16 29 29 H 1.08998 * 109.47232 * 299.99880 * 1 2 3 30 30 H 1.09005 * 109.47366 * 60.00167 * 1 2 3 31 31 H 1.09003 * 109.46880 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47211 * 60.00226 * 7 5 3 33 33 H 1.08996 * 109.47639 * 180.02562 * 7 5 3 34 34 H 1.09002 * 109.47421 * 59.99628 * 8 7 5 35 35 H 1.09001 * 109.47248 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.47586 * 179.97438 * 9 8 7 37 37 H 1.08997 * 109.47253 * 300.00150 * 9 8 7 38 38 H 1.09006 * 109.46958 * 180.02562 * 10 9 8 39 39 H 1.09002 * 109.47762 * 60.00339 * 10 9 8 40 40 H 0.96993 * 120.00755 * 244.99902 * 16 13 11 41 41 H 1.08997 * 109.47058 * 284.32592 * 17 16 13 42 42 H 1.08996 * 109.47425 * 44.32284 * 17 16 13 43 43 H 0.97004 * 120.00253 * 185.07843 * 22 21 19 44 44 H 1.09004 * 117.49887 * 359.97438 * 27 18 17 45 45 H 1.09003 * 117.50107 * 145.01868 * 27 18 17 46 46 H 1.08998 * 117.50147 * 214.97766 * 28 18 17 47 47 H 1.09007 * 117.50035 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9557 0.7809 -0.8907 7 6 4.1138 0.5810 1.2483 8 6 3.5672 1.2743 2.4979 9 6 4.0010 2.7415 2.4981 10 6 3.4535 3.4353 1.2492 11 6 4.0001 2.7420 -0.0004 12 1 5.0886 2.7992 -0.0008 13 16 3.3515 3.5651 -1.4812 14 8 1.9365 3.6751 -1.4110 15 8 3.9906 3.0674 -2.6486 16 7 3.8892 5.1262 -1.3551 17 6 5.3243 5.4140 -1.4182 18 6 5.5342 6.9084 -1.6705 19 6 4.5957 7.8298 -0.9348 20 1 3.6967 8.1831 -1.4179 21 6 4.8848 8.2219 0.3550 22 7 5.9090 7.6939 0.9889 23 14 3.8216 9.5031 1.2024 24 1 2.4228 9.0114 1.2819 25 1 4.3386 9.7474 2.5729 26 1 3.8582 10.7685 0.4260 27 6 5.9890 7.3318 -3.0686 28 6 6.9682 7.3925 -1.8945 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.8048 -0.4642 1.2482 33 1 5.2023 0.6384 1.2482 34 1 2.4787 1.2173 2.4983 35 1 3.9570 0.7797 3.3877 36 1 3.6113 3.2356 3.3881 37 1 5.0895 2.7986 2.4977 38 1 3.7629 4.4805 1.2491 39 1 2.3650 3.3784 1.2495 40 1 3.2538 5.8506 -1.2437 41 1 5.7925 5.1356 -0.4742 42 1 5.7743 4.8419 -2.2295 43 1 6.0691 7.9140 1.9200 44 1 6.1391 6.5457 -3.8086 45 1 5.6093 8.2770 -3.4567 46 1 7.2327 8.3775 -1.5102 47 1 7.7622 6.6463 -1.8618 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332131565.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:59 Heat of formation + Delta-G solvation = -135.046124 kcal Electronic energy + Delta-G solvation = -30915.066008 eV Core-core repulsion = 26804.992773 eV Total energy + Delta-G solvation = -4110.073235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.04463 -38.12603 -37.04808 -36.54645 -36.16909 -35.32972 -33.20408 -32.00781 -31.56041 -31.01473 -27.83372 -25.82756 -24.94013 -24.10057 -23.06193 -21.51549 -21.10145 -19.96367 -19.35823 -18.58667 -17.38498 -17.27991 -16.64215 -16.42726 -16.24111 -15.85661 -15.21190 -14.99647 -14.68895 -14.39805 -14.11725 -13.91317 -13.56621 -13.42742 -13.15308 -12.85065 -12.71766 -12.54102 -12.38860 -12.30497 -12.09479 -11.86654 -11.55906 -11.47233 -11.40252 -11.20994 -11.17842 -11.01763 -10.99129 -10.95789 -10.53144 -10.52303 -10.33357 -10.22081 -9.96258 -9.75665 -9.49978 -8.98015 -8.67908 -8.41446 -8.03742 -6.11682 -4.18805 0.79108 2.15414 2.56028 3.26534 3.31365 3.34055 3.36224 4.06138 4.32223 4.33964 4.36121 4.60250 4.72641 4.85745 5.00185 5.02641 5.11452 5.15750 5.19602 5.20516 5.26399 5.32715 5.38584 5.42971 5.63102 5.65868 5.82817 5.94454 5.96658 6.02893 6.13196 6.25040 6.27235 6.30310 6.36239 6.50691 6.54725 6.57377 6.78110 6.98377 7.07763 7.41200 7.55240 7.69887 7.78737 8.01929 8.37791 8.83469 9.48013 10.95999 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.004218 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.640569 B = 6636.994393 C = 7194.272339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.422 3.578 4 O -0.438 6.438 5 C -0.063 4.063 6 H 0.117 0.883 7 C -0.100 4.100 8 C -0.124 4.124 9 C -0.111 4.111 10 C -0.115 4.115 11 C -0.582 4.582 12 H 0.145 0.855 13 S 2.600 3.400 14 O -0.933 6.933 15 O -0.975 6.975 16 N -1.088 6.088 17 C 0.158 3.842 18 C 0.039 3.961 19 C -0.497 4.497 20 H 0.061 0.939 21 C 0.078 3.922 22 N -0.873 5.873 23 Si 0.885 3.115 24 H -0.275 1.275 25 H -0.288 1.288 26 H -0.276 1.276 27 C -0.212 4.212 28 C -0.154 4.154 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.424 0.576 41 H 0.060 0.940 42 H 0.046 0.954 43 H 0.261 0.739 44 H 0.067 0.933 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.662 -15.917 3.048 16.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.262 3.738 4 O -0.322 6.322 5 C -0.084 4.084 6 H 0.135 0.865 7 C -0.138 4.138 8 C -0.162 4.162 9 C -0.149 4.149 10 C -0.153 4.153 11 C -0.689 4.689 12 H 0.163 0.837 13 S 2.690 3.310 14 O -0.923 6.923 15 O -0.965 6.965 16 N -0.852 5.852 17 C 0.032 3.968 18 C 0.037 3.963 19 C -0.535 4.535 20 H 0.079 0.921 21 C -0.126 4.126 22 N -0.509 5.509 23 Si 0.713 3.287 24 H -0.200 1.200 25 H -0.213 1.213 26 H -0.202 1.202 27 C -0.249 4.249 28 C -0.192 4.192 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.263 0.737 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.101 0.899 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.159 -16.048 2.489 16.764 hybrid contribution -0.377 1.065 1.191 1.642 sum -4.536 -14.983 3.680 16.081 Atomic orbital electron populations 1.23285 0.76310 1.03415 1.02991 1.86439 1.23370 1.33132 1.84655 1.23881 0.92125 0.82408 0.75423 1.90995 1.66494 1.34158 1.40527 1.20750 0.88281 0.95616 1.03735 0.86532 1.21466 1.01530 0.99077 0.91763 1.21620 1.00690 0.96442 0.97440 1.21458 1.01270 0.94540 0.97677 1.21571 1.02909 1.00141 0.90663 1.30501 1.12875 1.03777 1.21712 0.83702 1.05234 0.74846 0.74859 0.76023 1.93669 1.27280 1.84718 1.86620 1.93557 1.78270 1.81186 1.43457 1.55246 1.15935 1.23814 1.90207 1.20777 0.78664 0.98370 0.99013 1.18887 0.94276 0.90585 0.92577 1.20303 1.06984 1.27621 0.98605 0.92074 1.24941 0.94642 0.95693 0.97338 1.69958 1.27744 1.42940 1.10299 0.86767 0.80868 0.82536 0.78549 1.20003 1.21323 1.20180 1.23103 1.07650 1.01681 0.92448 1.22520 0.93492 1.01672 1.01548 0.91830 0.91535 0.88258 0.90229 0.89818 0.92319 0.91236 0.91395 0.91369 0.88889 0.88415 0.73657 0.92168 0.93548 0.92897 0.91418 0.90412 0.89937 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.38 10.47 -39.24 -0.41 -4.79 16 3 C 0.42 6.04 5.41 36.01 0.19 6.23 16 4 O -0.44 -7.60 9.47 -27.11 -0.26 -7.86 16 5 C -0.06 -0.79 2.65 -91.77 -0.24 -1.03 16 6 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 7 C -0.10 -0.97 5.39 -26.73 -0.14 -1.11 16 8 C -0.12 -1.28 5.70 -26.73 -0.15 -1.44 16 9 C -0.11 -1.35 5.92 -26.73 -0.16 -1.51 16 10 C -0.12 -1.71 4.81 -26.73 -0.13 -1.84 16 11 C -0.58 -8.36 2.46 -26.73 -0.07 -8.43 16 12 H 0.15 1.80 8.14 -51.92 -0.42 1.38 16 13 S 2.60 47.74 4.57 -107.50 -0.49 47.25 16 14 O -0.93 -19.38 14.14 -67.55 -0.96 -20.34 16 15 O -0.97 -19.87 17.48 -57.54 -1.01 -20.87 16 16 N -1.09 -21.71 5.47 -10.61 -0.06 -21.77 16 17 C 0.16 3.29 6.22 -4.04 -0.03 3.27 16 18 C 0.04 0.89 1.76 -155.66 -0.27 0.62 16 19 C -0.50 -12.50 7.30 -34.44 -0.25 -12.76 16 20 H 0.06 1.55 7.82 -52.48 -0.41 1.14 16 21 C 0.08 1.98 5.39 -17.82 -0.10 1.89 16 22 N -0.87 -22.60 12.92 55.43 0.72 -21.88 16 23 Si 0.89 20.09 29.55 -169.99 -5.02 15.07 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 25 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 C -0.21 -4.52 9.88 -26.73 -0.26 -4.79 16 28 C -0.15 -3.42 9.45 -26.73 -0.25 -3.67 16 29 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 30 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.66 8.11 -51.93 -0.42 0.23 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.65 7.22 -51.93 -0.37 0.28 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 1.54 7.91 -51.93 -0.41 1.13 16 39 H 0.10 1.58 5.51 -51.93 -0.29 1.29 16 40 H 0.42 8.88 7.33 -34.47 -0.25 8.63 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.05 0.92 7.48 -51.93 -0.39 0.53 16 43 H 0.26 6.56 8.32 -40.82 -0.34 6.22 16 44 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 45 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 46 H 0.08 1.96 8.14 -51.93 -0.42 1.53 16 47 H 0.06 1.32 8.14 -51.92 -0.42 0.89 16 LS Contribution 381.87 15.07 5.75 5.75 Total: -1.00 -31.46 381.87 -10.12 -41.58 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -7.59 Total: 11.03 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -0.79 Total: -23.17 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 0.66 Total: -43.65 kcal Atomic # 8 Polarization: -51.23 SS G_CDS: -2.63 Total: -53.86 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 47.74 SS G_CDS: -0.49 Total: 47.25 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.46 -10.12 -41.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332131565.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.470 kcal (2) G-P(sol) polarization free energy of solvation -31.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds