Wall clock time and date at job start Wed Apr 1 2020 03:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 116.99813 * 2 1 4 4 O 1.20821 * 120.00204 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99801 * 180.02562 * 3 2 1 6 6 H 1.08993 * 109.47519 * 59.99775 * 5 3 2 7 7 C 1.53002 * 109.47124 * 299.99916 * 5 3 2 8 8 C 1.52998 * 109.47168 * 300.00243 * 7 5 3 9 9 C 1.52999 * 109.47253 * 299.99732 * 8 7 5 10 10 C 1.53002 * 109.46814 * 60.00052 * 9 8 7 11 11 C 1.52998 * 109.47168 * 300.00000 * 10 9 8 12 12 H 1.09005 * 109.46893 * 299.99843 * 11 10 9 13 13 S 1.81404 * 109.47402 * 180.02562 * 11 10 9 14 14 O 1.42101 * 110.53772 * 308.37759 * 13 11 10 15 15 O 1.42091 * 110.54549 * 171.62559 * 13 11 10 16 16 N 1.65596 * 104.44956 * 59.99511 * 13 11 10 17 17 C 1.46506 * 119.99525 * 65.28214 * 16 13 11 18 18 C 1.52999 * 109.47092 * 164.32560 * 17 16 13 19 19 C 1.50702 * 115.54919 * 39.67389 * 18 17 16 20 20 H 1.08003 * 119.99940 * 265.34700 * 19 18 17 21 21 C 1.37873 * 120.00241 * 85.34800 * 19 18 17 22 22 N 1.31513 * 119.99868 * 353.50839 * 21 19 18 23 23 Si 1.86806 * 120.00343 * 173.51182 * 21 19 18 24 24 H 1.48492 * 109.47019 * 59.99758 * 23 21 19 25 25 H 1.48502 * 109.47140 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46623 * 299.99743 * 23 21 19 27 27 C 1.52998 * 117.50113 * 253.96515 * 18 17 16 28 28 C 1.52996 * 117.50097 * 185.34115 * 18 17 16 29 29 H 1.08998 * 109.47232 * 299.99880 * 1 2 3 30 30 H 1.09005 * 109.47366 * 60.00167 * 1 2 3 31 31 H 1.09003 * 109.46880 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47211 * 60.00226 * 7 5 3 33 33 H 1.08996 * 109.47639 * 180.02562 * 7 5 3 34 34 H 1.09002 * 109.47421 * 59.99628 * 8 7 5 35 35 H 1.09001 * 109.47248 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.47586 * 179.97438 * 9 8 7 37 37 H 1.08997 * 109.47253 * 300.00150 * 9 8 7 38 38 H 1.09006 * 109.46958 * 180.02562 * 10 9 8 39 39 H 1.09002 * 109.47762 * 60.00339 * 10 9 8 40 40 H 0.96993 * 120.00755 * 244.99902 * 16 13 11 41 41 H 1.08997 * 109.47058 * 284.32592 * 17 16 13 42 42 H 1.08996 * 109.47425 * 44.32284 * 17 16 13 43 43 H 0.97004 * 120.00253 * 185.07843 * 22 21 19 44 44 H 1.09004 * 117.49887 * 359.97438 * 27 18 17 45 45 H 1.09003 * 117.50107 * 145.01868 * 27 18 17 46 46 H 1.08998 * 117.50147 * 214.97766 * 28 18 17 47 47 H 1.09007 * 117.50035 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9557 0.7809 -0.8907 7 6 4.1138 0.5810 1.2483 8 6 3.5672 1.2743 2.4979 9 6 4.0010 2.7415 2.4981 10 6 3.4535 3.4353 1.2492 11 6 4.0001 2.7420 -0.0004 12 1 5.0886 2.7992 -0.0008 13 16 3.3515 3.5651 -1.4812 14 8 1.9365 3.6751 -1.4110 15 8 3.9906 3.0674 -2.6486 16 7 3.8892 5.1262 -1.3551 17 6 5.3243 5.4140 -1.4182 18 6 5.5342 6.9084 -1.6705 19 6 4.5957 7.8298 -0.9348 20 1 3.6967 8.1831 -1.4179 21 6 4.8848 8.2219 0.3550 22 7 5.9090 7.6939 0.9889 23 14 3.8216 9.5031 1.2024 24 1 2.4228 9.0114 1.2819 25 1 4.3386 9.7474 2.5729 26 1 3.8582 10.7685 0.4260 27 6 5.9890 7.3318 -3.0686 28 6 6.9682 7.3925 -1.8945 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.8048 -0.4642 1.2482 33 1 5.2023 0.6384 1.2482 34 1 2.4787 1.2173 2.4983 35 1 3.9570 0.7797 3.3877 36 1 3.6113 3.2356 3.3881 37 1 5.0895 2.7986 2.4977 38 1 3.7629 4.4805 1.2491 39 1 2.3650 3.3784 1.2495 40 1 3.2538 5.8506 -1.2437 41 1 5.7925 5.1356 -0.4742 42 1 5.7743 4.8419 -2.2295 43 1 6.0691 7.9140 1.9200 44 1 6.1391 6.5457 -3.8086 45 1 5.6093 8.2770 -3.4567 46 1 7.2327 8.3775 -1.5102 47 1 7.7622 6.6463 -1.8618 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332131565.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:58 Heat of formation + Delta-G solvation = -154.479617 kcal Electronic energy + Delta-G solvation = -30915.908708 eV Core-core repulsion = 26804.992773 eV Total energy + Delta-G solvation = -4110.915935 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.09261 -39.10570 -38.76559 -38.02568 -37.31670 -36.84436 -34.80313 -33.94012 -32.54854 -32.02735 -28.66892 -27.69164 -26.65160 -25.09201 -24.06490 -22.86012 -22.50660 -21.30054 -20.85672 -20.01214 -18.56382 -18.42961 -18.19471 -17.84638 -17.48018 -16.96332 -16.78971 -16.55582 -16.12708 -15.76261 -15.30310 -14.96008 -14.92320 -14.60118 -14.49763 -14.30227 -14.08126 -13.75932 -13.61640 -13.45981 -13.33851 -12.99487 -12.97665 -12.92581 -12.87948 -12.82759 -12.77511 -12.54474 -12.33271 -12.14656 -11.97936 -11.91257 -11.61051 -11.31743 -11.26971 -11.03091 -10.94366 -10.81275 -10.46866 -10.15456 -9.75757 -8.06542 -6.16572 -0.62555 1.09326 1.43279 1.45922 1.50969 1.60957 1.88835 2.44768 2.81162 3.12120 3.17042 3.23454 3.52266 3.62670 3.70790 3.93502 4.06470 4.08887 4.23394 4.24574 4.32242 4.32728 4.34131 4.37479 4.56909 4.66008 4.67204 4.71943 4.74678 4.84530 4.89366 4.94323 5.06442 5.11285 5.14208 5.21886 5.25500 5.29855 5.31613 5.32737 5.51777 5.67037 5.79065 5.82347 6.31097 6.50119 6.66381 6.87717 7.51119 9.00411 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.004218 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.640569 B = 6636.994393 C = 7194.272339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.354 6.354 3 C 0.418 3.582 4 O -0.478 6.478 5 C -0.070 4.070 6 H 0.139 0.861 7 C -0.095 4.095 8 C -0.123 4.123 9 C -0.109 4.109 10 C -0.116 4.116 11 C -0.557 4.557 12 H 0.171 0.829 13 S 2.596 3.404 14 O -0.964 6.964 15 O -1.000 7.000 16 N -1.097 6.097 17 C 0.165 3.835 18 C 0.013 3.987 19 C -0.507 4.507 20 H 0.049 0.951 21 C 0.046 3.954 22 N -0.890 5.890 23 Si 0.931 3.069 24 H -0.277 1.277 25 H -0.284 1.284 26 H -0.279 1.279 27 C -0.201 4.201 28 C -0.151 4.151 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.138 0.862 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.046 0.954 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.417 0.583 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.261 0.739 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.708 -18.266 4.026 18.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.271 6.271 3 C 0.259 3.741 4 O -0.364 6.364 5 C -0.091 4.091 6 H 0.157 0.843 7 C -0.133 4.133 8 C -0.160 4.160 9 C -0.148 4.148 10 C -0.154 4.154 11 C -0.668 4.668 12 H 0.189 0.811 13 S 2.693 3.307 14 O -0.954 6.954 15 O -0.990 6.990 16 N -0.858 5.858 17 C 0.039 3.961 18 C 0.011 3.989 19 C -0.545 4.545 20 H 0.067 0.933 21 C -0.157 4.157 22 N -0.526 5.526 23 Si 0.758 3.242 24 H -0.202 1.202 25 H -0.210 1.210 26 H -0.204 1.204 27 C -0.238 4.238 28 C -0.190 4.190 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.156 0.844 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.064 0.936 35 H 0.114 0.886 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.254 0.746 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.105 0.895 45 H 0.092 0.908 46 H 0.080 0.920 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.216 -18.383 3.413 18.972 hybrid contribution -0.743 1.752 0.894 2.102 sum -3.958 -16.632 4.307 17.630 Atomic orbital electron populations 1.23571 0.75032 1.05779 1.02366 1.86432 1.24628 1.31925 1.84069 1.24334 0.92995 0.82406 0.74318 1.90996 1.67451 1.35462 1.42462 1.21020 0.87303 0.94182 1.06567 0.84343 1.21571 1.02762 0.99648 0.89320 1.21635 1.00108 0.95186 0.99107 1.21478 1.01752 0.95706 0.95825 1.21538 1.02089 0.99345 0.92439 1.30217 1.13992 1.04725 1.17894 0.81116 1.05183 0.74204 0.74417 0.76927 1.93636 1.29255 1.85006 1.87486 1.93512 1.78286 1.81190 1.46057 1.55234 1.15399 1.24389 1.90810 1.20670 0.79174 0.96943 0.99341 1.19056 0.94470 0.91628 0.93696 1.20448 1.06997 1.28077 0.98983 0.93313 1.25389 0.95589 0.96886 0.97827 1.70013 1.28533 1.43738 1.10365 0.86045 0.79619 0.80703 0.77804 1.20206 1.20951 1.20430 1.23119 1.06500 1.01993 0.92187 1.22449 0.93658 1.01047 1.01831 0.91914 0.92826 0.84373 0.87955 0.87471 0.93562 0.88613 0.91419 0.90270 0.91253 0.90103 0.74645 0.92163 0.92459 0.92953 0.89546 0.90762 0.91973 0.89978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.66 16 2 O -0.35 -7.99 10.47 -51.36 -0.54 -8.53 16 3 C 0.42 11.50 5.41 71.24 0.39 11.88 16 4 O -0.48 -16.80 9.47 29.97 0.28 -16.51 16 5 C -0.07 -1.57 2.65 -11.54 -0.03 -1.60 16 6 H 0.14 2.53 8.14 -2.39 -0.02 2.51 16 7 C -0.09 -1.44 5.39 30.59 0.16 -1.27 16 8 C -0.12 -2.14 5.70 30.59 0.17 -1.96 16 9 C -0.11 -2.42 5.92 30.59 0.18 -2.24 16 10 C -0.12 -3.40 4.81 30.59 0.15 -3.25 16 11 C -0.56 -15.22 2.46 30.59 0.08 -15.14 16 12 H 0.17 3.79 8.14 -2.39 -0.02 3.77 16 13 S 2.60 96.04 4.57 -56.49 -0.26 95.78 16 14 O -0.96 -41.47 14.14 -118.07 -1.67 -43.14 16 15 O -1.00 -40.54 17.48 -127.65 -2.23 -42.78 16 16 N -1.10 -44.55 5.47 -187.49 -1.03 -45.57 16 17 C 0.17 6.83 6.22 86.38 0.54 7.36 16 18 C 0.01 0.61 1.76 -52.93 -0.09 0.52 16 19 C -0.51 -25.87 7.30 25.60 0.19 -25.68 16 20 H 0.05 2.54 7.82 -2.91 -0.02 2.52 16 21 C 0.05 2.32 5.39 84.65 0.46 2.78 16 22 N -0.89 -46.07 12.92 21.45 0.28 -45.79 16 23 Si 0.93 41.62 29.55 68.60 2.03 43.65 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 25 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 26 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 27 C -0.20 -8.45 9.88 30.59 0.30 -8.15 16 28 C -0.15 -6.65 9.45 30.59 0.29 -6.36 16 29 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 30 H 0.05 1.11 8.13 -2.38 -0.02 1.09 16 31 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.10 1.18 8.11 -2.39 -0.02 1.16 16 33 H 0.11 1.20 8.14 -2.39 -0.02 1.19 16 34 H 0.05 0.93 7.22 -2.39 -0.02 0.91 16 35 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.07 2.34 7.91 -2.38 -0.02 2.32 16 39 H 0.08 2.68 5.51 -2.39 -0.01 2.67 16 40 H 0.42 18.18 7.33 -96.75 -0.71 17.47 16 41 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.06 2.21 7.48 -2.39 -0.02 2.19 16 43 H 0.26 13.08 8.32 -92.71 -0.77 12.30 16 44 H 0.09 3.29 8.08 -2.38 -0.02 3.27 16 45 H 0.07 3.13 8.14 -2.39 -0.02 3.12 16 46 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 47 H 0.08 3.26 8.14 -2.38 -0.02 3.24 16 Total: -1.00 -68.78 381.87 1.10 -67.68 By element: Atomic # 1 Polarization: 36.41 SS G_CDS: 0.26 Total: 36.67 kcal Atomic # 6 Polarization: -45.43 SS G_CDS: 3.97 Total: -41.46 kcal Atomic # 7 Polarization: -90.62 SS G_CDS: -0.75 Total: -91.36 kcal Atomic # 8 Polarization: -106.81 SS G_CDS: -4.15 Total: -110.96 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Atomic # 16 Polarization: 96.04 SS G_CDS: -0.26 Total: 95.78 kcal Total: -68.78 1.10 -67.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332131565.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.800 kcal (2) G-P(sol) polarization free energy of solvation -68.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds