Wall clock time and date at job start Wed Apr 1 2020 03:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 117.00303 * 2 1 4 4 O 1.20829 * 119.99682 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00293 * 179.97438 * 3 2 1 6 6 H 1.08995 * 109.46916 * 328.31606 * 5 3 2 7 7 C 1.53000 * 109.46937 * 88.31571 * 5 3 2 8 8 C 1.52999 * 109.47510 * 60.00022 * 7 5 3 9 9 C 1.52994 * 109.46903 * 59.99838 * 8 7 5 10 10 C 1.53000 * 109.47445 * 299.99891 * 9 8 7 11 11 C 1.52999 * 109.46981 * 60.00156 * 10 9 8 12 12 H 1.09011 * 109.46948 * 60.00059 * 11 10 9 13 13 S 1.81398 * 109.47321 * 179.97438 * 11 10 9 14 14 O 1.42099 * 110.54498 * 291.71249 * 13 11 10 15 15 O 1.42103 * 110.53763 * 68.46204 * 13 11 10 16 16 N 1.65595 * 104.44970 * 180.08229 * 13 11 10 17 17 C 1.46502 * 119.99850 * 66.37131 * 16 13 11 18 18 C 1.53002 * 109.47199 * 197.58714 * 17 16 13 19 19 C 1.50698 * 115.54980 * 33.72761 * 18 17 16 20 20 H 1.07994 * 120.00217 * 270.67966 * 19 18 17 21 21 C 1.37878 * 119.99484 * 90.68242 * 19 18 17 22 22 N 1.31513 * 120.00569 * 3.28706 * 21 19 18 23 23 Si 1.86805 * 119.99717 * 183.29138 * 21 19 18 24 24 H 1.48501 * 109.47234 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47205 * 119.99804 * 23 21 19 26 26 H 1.48504 * 109.46943 * 239.99770 * 23 21 19 27 27 C 1.53003 * 117.49439 * 248.02674 * 18 17 16 28 28 C 1.52995 * 117.49887 * 179.40429 * 18 17 16 29 29 H 1.08995 * 109.47225 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47483 * 300.00215 * 1 2 3 31 31 H 1.09008 * 109.46892 * 60.00273 * 1 2 3 32 32 H 1.09000 * 109.46890 * 299.99508 * 7 5 3 33 33 H 1.08999 * 109.47196 * 180.02562 * 7 5 3 34 34 H 1.09002 * 109.46731 * 300.00038 * 8 7 5 35 35 H 1.08998 * 109.46904 * 180.02562 * 8 7 5 36 36 H 1.09005 * 109.46707 * 179.97438 * 9 8 7 37 37 H 1.09002 * 109.47264 * 60.00526 * 9 8 7 38 38 H 1.08996 * 109.46957 * 300.00022 * 10 9 8 39 39 H 1.09002 * 109.47133 * 179.97438 * 10 9 8 40 40 H 0.97000 * 120.00183 * 246.36618 * 16 13 11 41 41 H 1.09003 * 109.47189 * 317.58397 * 17 16 13 42 42 H 1.08999 * 109.47237 * 77.58242 * 17 16 13 43 43 H 0.97000 * 120.00228 * 185.00675 * 22 21 19 44 44 H 1.08993 * 117.50383 * 359.97438 * 27 18 17 45 45 H 1.09004 * 117.49757 * 145.02529 * 27 18 17 46 46 H 1.09005 * 117.49614 * 214.97782 * 28 18 17 47 47 H 1.08996 * 117.49985 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9747 0.4207 0.5407 7 6 4.0784 1.2589 -1.4411 8 6 3.5052 2.4578 -2.1993 9 6 3.9478 3.7527 -1.5152 10 6 3.4356 3.7688 -0.0735 11 6 4.0088 2.5699 0.6847 12 1 5.0975 2.6269 0.6851 13 16 3.4023 2.5892 2.3941 14 8 3.9570 3.6858 3.1077 15 8 2.0073 2.3214 2.4312 16 7 4.0928 1.2560 3.0927 17 6 5.5446 1.1962 3.2798 18 6 5.9684 -0.2541 3.5204 19 6 5.1625 -1.2966 2.7892 20 1 4.2780 -1.7144 3.2467 21 6 5.5546 -1.7171 1.5360 22 7 6.6666 -1.2567 1.0058 23 14 4.5062 -2.9408 0.5910 24 1 3.3154 -3.3020 1.4013 25 1 4.0674 -2.3312 -0.6900 26 1 5.3028 -4.1624 0.3107 27 6 6.4951 -0.6147 4.9110 28 6 7.4593 -0.5296 3.7261 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 3.7631 0.3362 -1.9284 33 1 5.1669 1.3155 -1.4407 34 1 2.4167 2.4007 -2.1997 35 1 3.8697 2.4461 -3.2265 36 1 3.5397 4.6069 -2.0557 37 1 5.0363 3.8098 -1.5148 38 1 2.3472 3.7118 -0.0740 39 1 3.7514 4.6912 0.4140 40 1 3.5360 0.5147 3.3780 41 1 6.0420 1.5768 2.3877 42 1 5.8255 1.8042 4.1397 43 1 6.9056 -1.4954 0.0965 44 1 6.5400 0.1812 5.6542 45 1 6.2587 -1.6063 5.2971 46 1 7.8572 -1.4651 3.3327 47 1 8.1382 0.3223 3.6895 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332131569.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:02 Heat of formation + Delta-G solvation = -136.632856 kcal Electronic energy + Delta-G solvation = -31938.664900 eV Core-core repulsion = 27828.522859 eV Total energy + Delta-G solvation = -4110.142041 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.81152 -37.97435 -37.11046 -36.60425 -35.80906 -35.49258 -33.34289 -32.05117 -31.32827 -31.03875 -27.57483 -25.91143 -25.04564 -23.87448 -22.98903 -21.27080 -21.10661 -19.91110 -19.43525 -18.70819 -17.31816 -17.07555 -16.72639 -16.42918 -15.98910 -15.65486 -15.30626 -14.99623 -14.64120 -14.29826 -14.05795 -13.68637 -13.54523 -13.29266 -13.08289 -12.94388 -12.67324 -12.54871 -12.29156 -12.17295 -11.95135 -11.85703 -11.65427 -11.55887 -11.36567 -11.21275 -11.11908 -11.02286 -10.96816 -10.93307 -10.54945 -10.48515 -10.23227 -10.20219 -9.85824 -9.53766 -9.42112 -9.14658 -8.70229 -8.48403 -8.08279 -6.16117 -4.24079 0.70903 2.45089 2.90627 3.20071 3.28029 3.30579 3.36474 4.15454 4.24074 4.29703 4.62944 4.81688 4.87165 5.05909 5.09181 5.15055 5.24482 5.26241 5.29103 5.31496 5.41162 5.51487 5.59951 5.68347 5.75149 5.81916 5.89164 6.02955 6.08689 6.13532 6.15098 6.19129 6.20401 6.28453 6.34220 6.44802 6.47255 6.73820 6.84387 6.86736 7.09046 7.34029 7.57848 7.73761 7.82098 8.02829 8.31259 8.78616 9.42351 10.90436 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010346 B = 0.006595 C = 0.005409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.815471 B = 4244.314017 C = 5174.926815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.349 6.349 3 C 0.463 3.537 4 O -0.485 6.485 5 C -0.063 4.063 6 H 0.137 0.863 7 C -0.099 4.099 8 C -0.127 4.127 9 C -0.103 4.103 10 C -0.135 4.135 11 C -0.574 4.574 12 H 0.148 0.852 13 S 2.604 3.396 14 O -0.967 6.967 15 O -0.956 6.956 16 N -1.090 6.090 17 C 0.163 3.837 18 C 0.025 3.975 19 C -0.487 4.487 20 H 0.061 0.939 21 C 0.077 3.923 22 N -0.874 5.874 23 Si 0.870 3.130 24 H -0.269 1.269 25 H -0.276 1.276 26 H -0.286 1.286 27 C -0.213 4.213 28 C -0.142 4.142 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.121 0.879 39 H 0.069 0.931 40 H 0.421 0.579 41 H 0.059 0.941 42 H 0.044 0.956 43 H 0.260 0.740 44 H 0.065 0.935 45 H 0.077 0.923 46 H 0.089 0.911 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.098 5.171 -5.752 9.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.265 6.265 3 C 0.306 3.694 4 O -0.372 6.372 5 C -0.083 4.083 6 H 0.154 0.846 7 C -0.138 4.138 8 C -0.164 4.164 9 C -0.141 4.141 10 C -0.173 4.173 11 C -0.683 4.683 12 H 0.165 0.835 13 S 2.696 3.304 14 O -0.957 6.957 15 O -0.947 6.947 16 N -0.852 5.852 17 C 0.037 3.963 18 C 0.023 3.977 19 C -0.525 4.525 20 H 0.080 0.920 21 C -0.127 4.127 22 N -0.510 5.510 23 Si 0.697 3.303 24 H -0.193 1.193 25 H -0.201 1.201 26 H -0.212 1.212 27 C -0.250 4.250 28 C -0.180 4.180 29 H 0.115 0.885 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.138 0.862 39 H 0.088 0.912 40 H 0.258 0.742 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.096 0.904 46 H 0.108 0.892 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.643 6.176 -5.504 10.014 hybrid contribution -0.272 -1.345 -1.016 1.707 sum -5.915 4.831 -6.520 10.042 Atomic orbital electron populations 1.23256 0.76660 1.03360 1.02633 1.86536 1.23200 1.33026 1.83784 1.23617 0.91760 0.81685 0.72355 1.90431 1.66985 1.35217 1.44550 1.20692 0.87925 0.98498 1.01205 0.84555 1.21414 1.02220 0.98852 0.91283 1.21650 1.01100 0.94757 0.98916 1.21348 1.00803 0.97331 0.94642 1.21955 1.05236 0.93901 0.96200 1.30387 1.12771 1.01402 1.23702 0.83456 1.05106 0.74281 0.74253 0.76740 1.93554 1.80234 1.53443 1.68435 1.93586 1.30090 1.84443 1.86531 1.55211 1.16689 1.37306 1.75968 1.20800 0.77875 0.98735 0.98923 1.19032 0.93969 0.91438 0.93247 1.20357 1.10160 1.20659 1.01370 0.92048 1.24893 0.94328 0.95705 0.97729 1.70020 1.21467 1.45089 1.14461 0.86867 0.80899 0.81785 0.80732 1.19346 1.20105 1.21217 1.23135 1.08869 1.00799 0.92233 1.22472 0.93430 1.01709 1.00390 0.88480 0.91164 0.92332 0.90766 0.89225 0.91821 0.91494 0.91652 0.91733 0.86157 0.91189 0.74217 0.92314 0.93737 0.93014 0.91639 0.90438 0.89228 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 101.05 1.07 1.53 16 2 O -0.35 -6.07 10.56 -39.25 -0.41 -6.48 16 3 C 0.46 8.16 4.55 36.01 0.16 8.33 16 4 O -0.48 -8.78 10.48 -26.02 -0.27 -9.05 16 5 C -0.06 -1.06 2.58 -91.77 -0.24 -1.30 16 6 H 0.14 2.55 7.64 -51.93 -0.40 2.16 16 7 C -0.10 -1.44 5.44 -26.73 -0.15 -1.58 16 8 C -0.13 -1.60 5.65 -26.73 -0.15 -1.75 16 9 C -0.10 -1.25 5.92 -26.73 -0.16 -1.41 16 10 C -0.13 -1.95 4.90 -26.73 -0.13 -2.08 16 11 C -0.57 -9.19 2.35 -26.73 -0.06 -9.25 16 12 H 0.15 2.14 7.48 -51.92 -0.39 1.76 16 13 S 2.60 48.29 4.83 -107.50 -0.52 47.77 16 14 O -0.97 -19.88 17.79 -57.54 -1.02 -20.90 16 15 O -0.96 -19.52 14.84 -66.29 -0.98 -20.50 16 16 N -1.09 -20.71 5.15 -10.61 -0.05 -20.76 16 17 C 0.16 3.23 6.14 -4.04 -0.02 3.20 16 18 C 0.02 0.54 1.93 -155.66 -0.30 0.24 16 19 C -0.49 -11.47 7.47 -34.44 -0.26 -11.73 16 20 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 21 C 0.08 1.83 5.14 -17.82 -0.09 1.74 16 22 N -0.87 -21.19 12.22 55.43 0.68 -20.51 16 23 Si 0.87 19.03 29.54 -169.99 -5.02 14.01 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 26 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 27 C -0.21 -4.29 9.88 -26.73 -0.26 -4.56 16 28 C -0.14 -3.03 8.95 -26.73 -0.24 -3.27 16 29 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 31 H 0.06 0.70 8.13 -51.92 -0.42 0.28 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 0.86 6.71 -51.93 -0.35 0.51 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.12 1.91 4.86 -52.20 -0.25 1.66 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.42 8.02 7.79 -34.47 -0.27 7.75 16 41 H 0.06 1.13 7.31 -51.93 -0.38 0.75 16 42 H 0.04 0.85 7.90 -51.93 -0.41 0.44 16 43 H 0.26 6.10 8.32 -40.82 -0.34 5.76 16 44 H 0.07 1.21 8.05 -51.93 -0.42 0.79 16 45 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 46 H 0.09 2.09 7.88 -51.93 -0.41 1.68 16 47 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 379.50 15.07 5.72 5.72 Total: -1.00 -28.88 379.50 -10.19 -39.08 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -7.47 Total: 13.51 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: -0.83 Total: -21.88 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.62 Total: -41.27 kcal Atomic # 8 Polarization: -54.24 SS G_CDS: -2.69 Total: -56.94 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.01 kcal Atomic # 16 Polarization: 48.29 SS G_CDS: -0.52 Total: 47.77 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.88 -10.19 -39.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332131569.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.555 kcal (2) G-P(sol) polarization free energy of solvation -28.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds