Wall clock time and date at job start Wed Apr 1 2020 03:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 117.00303 * 2 1 4 4 O 1.20829 * 119.99682 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00293 * 179.97438 * 3 2 1 6 6 H 1.08995 * 109.46916 * 328.31606 * 5 3 2 7 7 C 1.53000 * 109.46937 * 88.31571 * 5 3 2 8 8 C 1.52999 * 109.47510 * 60.00022 * 7 5 3 9 9 C 1.52994 * 109.46903 * 59.99838 * 8 7 5 10 10 C 1.53000 * 109.47445 * 299.99891 * 9 8 7 11 11 C 1.52999 * 109.46981 * 60.00156 * 10 9 8 12 12 H 1.09011 * 109.46948 * 60.00059 * 11 10 9 13 13 S 1.81398 * 109.47321 * 179.97438 * 11 10 9 14 14 O 1.42099 * 110.54498 * 291.71249 * 13 11 10 15 15 O 1.42103 * 110.53763 * 68.46204 * 13 11 10 16 16 N 1.65595 * 104.44970 * 180.08229 * 13 11 10 17 17 C 1.46502 * 119.99850 * 66.37131 * 16 13 11 18 18 C 1.53002 * 109.47199 * 197.58714 * 17 16 13 19 19 C 1.50698 * 115.54980 * 33.72761 * 18 17 16 20 20 H 1.07994 * 120.00217 * 270.67966 * 19 18 17 21 21 C 1.37878 * 119.99484 * 90.68242 * 19 18 17 22 22 N 1.31513 * 120.00569 * 3.28706 * 21 19 18 23 23 Si 1.86805 * 119.99717 * 183.29138 * 21 19 18 24 24 H 1.48501 * 109.47234 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47205 * 119.99804 * 23 21 19 26 26 H 1.48504 * 109.46943 * 239.99770 * 23 21 19 27 27 C 1.53003 * 117.49439 * 248.02674 * 18 17 16 28 28 C 1.52995 * 117.49887 * 179.40429 * 18 17 16 29 29 H 1.08995 * 109.47225 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47483 * 300.00215 * 1 2 3 31 31 H 1.09008 * 109.46892 * 60.00273 * 1 2 3 32 32 H 1.09000 * 109.46890 * 299.99508 * 7 5 3 33 33 H 1.08999 * 109.47196 * 180.02562 * 7 5 3 34 34 H 1.09002 * 109.46731 * 300.00038 * 8 7 5 35 35 H 1.08998 * 109.46904 * 180.02562 * 8 7 5 36 36 H 1.09005 * 109.46707 * 179.97438 * 9 8 7 37 37 H 1.09002 * 109.47264 * 60.00526 * 9 8 7 38 38 H 1.08996 * 109.46957 * 300.00022 * 10 9 8 39 39 H 1.09002 * 109.47133 * 179.97438 * 10 9 8 40 40 H 0.97000 * 120.00183 * 246.36618 * 16 13 11 41 41 H 1.09003 * 109.47189 * 317.58397 * 17 16 13 42 42 H 1.08999 * 109.47237 * 77.58242 * 17 16 13 43 43 H 0.97000 * 120.00228 * 185.00675 * 22 21 19 44 44 H 1.08993 * 117.50383 * 359.97438 * 27 18 17 45 45 H 1.09004 * 117.49757 * 145.02529 * 27 18 17 46 46 H 1.09005 * 117.49614 * 214.97782 * 28 18 17 47 47 H 1.08996 * 117.49985 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9747 0.4207 0.5407 7 6 4.0784 1.2589 -1.4411 8 6 3.5052 2.4578 -2.1993 9 6 3.9478 3.7527 -1.5152 10 6 3.4356 3.7688 -0.0735 11 6 4.0088 2.5699 0.6847 12 1 5.0975 2.6269 0.6851 13 16 3.4023 2.5892 2.3941 14 8 3.9570 3.6858 3.1077 15 8 2.0073 2.3214 2.4312 16 7 4.0928 1.2560 3.0927 17 6 5.5446 1.1962 3.2798 18 6 5.9684 -0.2541 3.5204 19 6 5.1625 -1.2966 2.7892 20 1 4.2780 -1.7144 3.2467 21 6 5.5546 -1.7171 1.5360 22 7 6.6666 -1.2567 1.0058 23 14 4.5062 -2.9408 0.5910 24 1 3.3154 -3.3020 1.4013 25 1 4.0674 -2.3312 -0.6900 26 1 5.3028 -4.1624 0.3107 27 6 6.4951 -0.6147 4.9110 28 6 7.4593 -0.5296 3.7261 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 3.7631 0.3362 -1.9284 33 1 5.1669 1.3155 -1.4407 34 1 2.4167 2.4007 -2.1997 35 1 3.8697 2.4461 -3.2265 36 1 3.5397 4.6069 -2.0557 37 1 5.0363 3.8098 -1.5148 38 1 2.3472 3.7118 -0.0740 39 1 3.7514 4.6912 0.4140 40 1 3.5360 0.5147 3.3780 41 1 6.0420 1.5768 2.3877 42 1 5.8255 1.8042 4.1397 43 1 6.9056 -1.4954 0.0965 44 1 6.5400 0.1812 5.6542 45 1 6.2587 -1.6063 5.2971 46 1 7.8572 -1.4651 3.3327 47 1 8.1382 0.3223 3.6895 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332131569.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:01 Heat of formation + Delta-G solvation = -153.251692 kcal Electronic energy + Delta-G solvation = -31939.385547 eV Core-core repulsion = 27828.522859 eV Total energy + Delta-G solvation = -4110.862688 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.09430 -39.17341 -38.75441 -38.14745 -37.12995 -37.01977 -34.89555 -33.85649 -32.48698 -32.19077 -28.68872 -27.66358 -26.68469 -25.07769 -24.13919 -22.78389 -22.41591 -21.28456 -20.99056 -20.18474 -18.61780 -18.50577 -18.25799 -17.94370 -17.40259 -16.89144 -16.85399 -16.55109 -16.11549 -15.71618 -15.33576 -14.96857 -14.82734 -14.73997 -14.56747 -14.29289 -14.09125 -13.73497 -13.68385 -13.55169 -13.31280 -13.21359 -13.11231 -12.98704 -12.89314 -12.76940 -12.71971 -12.53813 -12.30209 -12.24018 -12.00832 -11.90263 -11.71399 -11.31332 -11.30125 -11.01120 -10.88206 -10.70443 -10.28302 -10.24207 -9.73064 -7.99567 -6.09457 -0.74129 1.12100 1.43854 1.52204 1.58538 1.69311 1.80488 2.49962 2.72281 2.91098 3.26894 3.40370 3.50376 3.59540 3.69490 3.94050 4.03508 4.11376 4.19242 4.27300 4.27959 4.34642 4.35736 4.43558 4.53623 4.59764 4.66686 4.68080 4.78459 4.81040 4.87089 4.89431 5.06813 5.09435 5.12692 5.14656 5.19741 5.25696 5.31097 5.41031 5.63766 5.70413 5.86001 5.88344 6.25965 6.53273 6.71819 6.94824 7.57796 9.07021 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010346 B = 0.006595 C = 0.005409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.815471 B = 4244.314017 C = 5174.926815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.368 6.368 3 C 0.459 3.541 4 O -0.494 6.494 5 C -0.066 4.066 6 H 0.115 0.885 7 C -0.099 4.099 8 C -0.123 4.123 9 C -0.100 4.100 10 C -0.140 4.140 11 C -0.557 4.557 12 H 0.165 0.835 13 S 2.605 3.395 14 O -0.990 6.990 15 O -0.980 6.980 16 N -1.093 6.093 17 C 0.167 3.833 18 C 0.008 3.992 19 C -0.494 4.494 20 H 0.049 0.951 21 C 0.055 3.945 22 N -0.888 5.888 23 Si 0.904 3.096 24 H -0.276 1.276 25 H -0.265 1.265 26 H -0.294 1.294 27 C -0.200 4.200 28 C -0.143 4.143 29 H 0.126 0.874 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.052 0.948 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.419 0.581 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.261 0.739 44 H 0.087 0.913 45 H 0.073 0.927 46 H 0.065 0.935 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.825 5.977 -7.043 10.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C 0.302 3.698 4 O -0.382 6.382 5 C -0.087 4.087 6 H 0.133 0.867 7 C -0.137 4.137 8 C -0.161 4.161 9 C -0.138 4.138 10 C -0.178 4.178 11 C -0.669 4.669 12 H 0.182 0.818 13 S 2.701 3.299 14 O -0.980 6.980 15 O -0.970 6.970 16 N -0.853 5.853 17 C 0.040 3.960 18 C 0.006 3.994 19 C -0.532 4.532 20 H 0.068 0.932 21 C -0.147 4.147 22 N -0.525 5.525 23 Si 0.731 3.269 24 H -0.200 1.200 25 H -0.190 1.190 26 H -0.220 1.220 27 C -0.237 4.237 28 C -0.181 4.181 29 H 0.144 0.856 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.114 0.886 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.101 0.899 40 H 0.255 0.745 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.105 0.895 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.388 6.977 -6.754 11.105 hybrid contribution -0.402 -1.641 -0.604 1.794 sum -5.790 5.336 -7.358 10.777 Atomic orbital electron populations 1.23555 0.74830 1.05414 1.02859 1.86513 1.25186 1.33068 1.83666 1.23792 0.92152 0.81686 0.72142 1.90434 1.67312 1.35410 1.45066 1.20739 0.87557 0.97767 1.02607 0.86696 1.21479 1.02598 0.99866 0.89799 1.21651 1.00387 0.93994 1.00040 1.21392 1.01722 0.97892 0.92833 1.22056 1.04419 0.93450 0.97896 1.30233 1.13664 1.02201 1.20787 0.81755 1.04967 0.73699 0.73542 0.77723 1.93517 1.80352 1.54144 1.70035 1.93551 1.31570 1.84577 1.87320 1.55135 1.16349 1.37106 1.76743 1.20746 0.78177 0.97561 0.99490 1.19131 0.93973 0.92049 0.94262 1.20446 1.09951 1.21133 1.01650 0.93248 1.25185 0.94867 0.96502 0.98174 1.70057 1.21981 1.45818 1.14642 0.86347 0.79705 0.80388 0.80436 1.20050 1.18995 1.22047 1.23150 1.07308 1.01260 0.92032 1.22367 0.93495 1.01110 1.01123 0.85631 0.92201 0.90866 0.90975 0.88558 0.92903 0.88970 0.89526 0.90319 0.87568 0.89931 0.74521 0.91904 0.92905 0.92936 0.89496 0.90887 0.91634 0.90514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.56 113.37 1.20 1.88 16 2 O -0.37 -12.61 10.56 -51.39 -0.54 -13.16 16 3 C 0.46 15.94 4.55 71.24 0.32 16.27 16 4 O -0.49 -17.67 10.48 28.90 0.30 -17.37 16 5 C -0.07 -2.16 2.58 -11.54 -0.03 -2.19 16 6 H 0.12 4.28 7.64 -2.39 -0.02 4.26 16 7 C -0.10 -2.67 5.44 30.59 0.17 -2.50 16 8 C -0.12 -2.76 5.65 30.59 0.17 -2.59 16 9 C -0.10 -2.11 5.92 30.59 0.18 -1.93 16 10 C -0.14 -3.77 4.90 30.59 0.15 -3.62 16 11 C -0.56 -17.09 2.35 30.59 0.07 -17.02 16 12 H 0.16 4.46 7.48 -2.38 -0.02 4.44 16 13 S 2.60 95.83 4.83 -56.49 -0.27 95.55 16 14 O -0.99 -40.22 17.79 -127.65 -2.27 -42.49 16 15 O -0.98 -40.37 14.84 -119.28 -1.77 -42.14 16 16 N -1.09 -41.36 5.15 -187.48 -0.97 -42.33 16 17 C 0.17 6.45 6.14 86.38 0.53 6.98 16 18 C 0.01 0.32 1.93 -52.93 -0.10 0.22 16 19 C -0.49 -23.23 7.47 25.60 0.19 -23.04 16 20 H 0.05 2.40 7.81 -2.91 -0.02 2.37 16 21 C 0.05 2.59 5.14 84.66 0.44 3.03 16 22 N -0.89 -42.56 12.22 21.45 0.26 -42.30 16 23 Si 0.90 38.75 29.54 68.60 2.03 40.78 16 24 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 26 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 27 C -0.20 -7.83 9.88 30.60 0.30 -7.53 16 28 C -0.14 -5.97 8.95 30.59 0.27 -5.70 16 29 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.06 1.67 8.13 -2.39 -0.02 1.65 16 31 H 0.07 1.66 8.13 -2.38 -0.02 1.64 16 32 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.05 1.31 6.71 -2.39 -0.02 1.29 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.11 3.24 4.86 -6.64 -0.03 3.21 16 39 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 40 H 0.42 16.17 7.79 -96.75 -0.75 15.42 16 41 H 0.06 2.34 7.31 -2.39 -0.02 2.33 16 42 H 0.05 1.94 7.90 -2.39 -0.02 1.92 16 43 H 0.26 12.07 8.32 -92.71 -0.77 11.30 16 44 H 0.09 3.01 8.05 -2.39 -0.02 3.00 16 45 H 0.07 2.90 8.14 -2.38 -0.02 2.88 16 46 H 0.07 3.05 7.88 -2.38 -0.02 3.03 16 47 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -60.65 379.50 0.84 -59.81 By element: Atomic # 1 Polarization: 41.18 SS G_CDS: 0.20 Total: 41.38 kcal Atomic # 6 Polarization: -41.60 SS G_CDS: 3.87 Total: -37.74 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -0.70 Total: -84.62 kcal Atomic # 8 Polarization: -110.88 SS G_CDS: -4.28 Total: -115.16 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Atomic # 16 Polarization: 95.83 SS G_CDS: -0.27 Total: 95.55 kcal Total: -60.65 0.84 -59.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332131569.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.440 kcal (2) G-P(sol) polarization free energy of solvation -60.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds