Wall clock time and date at job start Wed Apr 1 2020 03:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34231 * 116.99953 * 2 1 4 4 O 1.20830 * 119.99852 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00063 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.47448 * 299.99393 * 5 3 2 7 7 C 1.53003 * 109.47356 * 59.99846 * 5 3 2 8 8 C 1.53001 * 109.47436 * 180.02562 * 7 5 3 9 9 C 1.53003 * 109.46887 * 299.99724 * 8 7 5 10 10 C 1.53003 * 109.46857 * 59.99921 * 9 8 7 11 11 C 1.53001 * 109.47436 * 299.99742 * 10 9 8 12 12 H 1.08996 * 109.46880 * 300.00358 * 11 10 9 13 13 S 1.81397 * 109.47036 * 180.02562 * 11 10 9 14 14 O 1.42100 * 110.53974 * 171.62504 * 13 11 10 15 15 O 1.42095 * 110.54329 * 308.37861 * 13 11 10 16 16 N 1.65603 * 104.44724 * 60.00456 * 13 11 10 17 17 C 1.46496 * 120.00185 * 65.00037 * 16 13 11 18 18 C 1.53001 * 109.47240 * 164.32665 * 17 16 13 19 19 C 1.50700 * 115.54860 * 39.65877 * 18 17 16 20 20 H 1.08006 * 120.00081 * 265.35103 * 19 18 17 21 21 C 1.37878 * 119.99914 * 85.35362 * 19 18 17 22 22 N 1.31515 * 119.99958 * 353.51782 * 21 19 18 23 23 Si 1.86804 * 119.99913 * 173.52250 * 21 19 18 24 24 H 1.48492 * 109.47292 * 89.99724 * 23 21 19 25 25 H 1.48505 * 109.46885 * 210.00108 * 23 21 19 26 26 H 1.48502 * 109.46854 * 329.99433 * 23 21 19 27 27 C 1.53001 * 117.49888 * 253.95464 * 18 17 16 28 28 C 1.52991 * 117.50004 * 185.33326 * 18 17 16 29 29 H 1.08994 * 109.46928 * 60.00099 * 1 2 3 30 30 H 1.09000 * 109.47221 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46753 * 300.00302 * 1 2 3 32 32 H 1.09004 * 109.46761 * 299.99803 * 7 5 3 33 33 H 1.08999 * 109.47212 * 59.99402 * 7 5 3 34 34 H 1.08996 * 109.46880 * 59.99642 * 8 7 5 35 35 H 1.08994 * 109.47434 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.46938 * 179.97438 * 9 8 7 37 37 H 1.08999 * 109.46768 * 300.00190 * 9 8 7 38 38 H 1.08999 * 109.47212 * 60.00540 * 10 9 8 39 39 H 1.09004 * 109.46788 * 179.97438 * 10 9 8 40 40 H 0.97008 * 119.99341 * 244.99563 * 16 13 11 41 41 H 1.09000 * 109.46651 * 284.32203 * 17 16 13 42 42 H 1.08997 * 109.47402 * 44.32230 * 17 16 13 43 43 H 0.97004 * 119.99655 * 185.08602 * 22 21 19 44 44 H 1.09004 * 117.49380 * 0.02562 * 27 18 17 45 45 H 1.09001 * 117.50076 * 145.01691 * 27 18 17 46 46 H 1.09007 * 117.50180 * 214.97631 * 28 18 17 47 47 H 1.09001 * 117.49887 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9557 0.7811 0.8909 7 6 4.1139 0.5811 -1.2483 8 6 5.6419 0.6606 -1.2474 9 6 6.0761 2.1277 -1.2473 10 6 5.5285 2.8215 0.0016 11 6 4.0006 2.7420 0.0007 12 1 3.6116 3.2361 -0.8896 13 16 3.3514 3.5653 1.4810 14 8 1.9364 3.6753 1.4102 15 8 3.9901 3.0679 2.6487 16 7 3.8892 5.1265 1.3548 17 6 3.4156 5.9783 0.2611 18 6 3.7340 7.4406 0.5790 19 6 5.0731 7.6889 1.2240 20 1 5.1509 7.7534 2.2993 21 6 6.1991 7.8336 0.4414 22 7 6.1289 7.6292 -0.8558 23 14 7.8241 8.3199 1.2239 24 1 8.5647 7.0976 1.6273 25 1 8.6341 9.0891 0.2453 26 1 7.5654 9.1597 2.4210 27 6 2.5705 8.3425 0.9960 28 6 3.2066 8.5043 -0.3860 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.8049 -0.4643 -1.2481 33 1 3.7245 1.0749 -2.1386 34 1 6.0308 0.1665 -0.3571 35 1 6.0319 0.1667 -2.1373 36 1 7.1646 2.1844 -1.2462 37 1 5.6870 2.6218 -2.1376 38 1 5.9176 2.3275 0.8918 39 1 5.8383 3.8666 0.0018 40 1 4.5178 5.4769 2.0053 41 1 3.9137 5.6910 -0.6649 42 1 2.3384 5.8575 0.1468 43 1 6.9343 7.6584 -1.3957 44 1 1.5783 7.8937 1.0443 45 1 2.7734 9.1155 1.7372 46 1 3.8281 9.3840 -0.5540 47 1 2.6332 8.1623 -1.2476 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332131573.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:04 Heat of formation + Delta-G solvation = -140.808093 kcal Electronic energy + Delta-G solvation = -30708.873122 eV Core-core repulsion = 26598.550029 eV Total energy + Delta-G solvation = -4110.323093 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.80246 -38.28239 -37.01466 -36.71790 -36.20587 -35.31851 -33.19495 -32.00989 -31.62836 -31.06816 -27.81218 -25.82728 -24.93105 -24.16218 -23.10775 -21.09642 -20.97782 -20.16071 -19.35453 -18.55671 -17.64335 -17.21601 -16.96559 -16.43399 -16.19037 -15.88281 -15.23167 -14.72673 -14.62083 -14.39713 -14.14257 -14.05985 -13.70182 -13.33137 -13.31027 -12.81684 -12.73699 -12.69451 -12.42116 -12.13628 -11.91090 -11.74469 -11.67926 -11.42442 -11.36043 -11.25875 -11.17875 -11.00910 -10.98675 -10.82761 -10.67365 -10.61092 -10.50723 -10.24834 -10.19660 -9.74191 -9.49375 -8.96334 -8.67200 -8.41559 -8.02055 -6.11912 -4.19099 0.78929 2.12899 2.53160 3.22975 3.31471 3.33948 3.36580 4.05297 4.25545 4.32844 4.38837 4.59756 4.66727 4.91462 4.97314 5.02741 5.11748 5.12812 5.14294 5.15969 5.21600 5.32480 5.36225 5.43515 5.62445 5.69471 5.80109 5.91380 5.93501 5.99404 6.07466 6.22016 6.29019 6.31216 6.32479 6.38455 6.53061 6.61767 6.80759 7.01591 7.09703 7.42871 7.56418 7.65917 7.78128 8.00407 8.38422 8.83493 9.47457 10.95709 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013598 B = 0.004324 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.657277 B = 6474.646110 C = 7531.645222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.418 3.582 4 O -0.442 6.442 5 C -0.061 4.061 6 H 0.118 0.882 7 C -0.099 4.099 8 C -0.119 4.119 9 C -0.113 4.113 10 C -0.103 4.103 11 C -0.584 4.584 12 H 0.143 0.857 13 S 2.600 3.400 14 O -0.931 6.931 15 O -0.976 6.976 16 N -1.088 6.088 17 C 0.161 3.839 18 C 0.037 3.963 19 C -0.496 4.496 20 H 0.061 0.939 21 C 0.077 3.923 22 N -0.873 5.873 23 Si 0.885 3.115 24 H -0.279 1.279 25 H -0.287 1.287 26 H -0.273 1.273 27 C -0.211 4.211 28 C -0.154 4.154 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.422 0.578 41 H 0.059 0.941 42 H 0.049 0.951 43 H 0.260 0.740 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.515 -15.933 -3.061 16.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.257 3.743 4 O -0.325 6.325 5 C -0.082 4.082 6 H 0.136 0.864 7 C -0.138 4.138 8 C -0.157 4.157 9 C -0.152 4.152 10 C -0.141 4.141 11 C -0.690 4.690 12 H 0.161 0.839 13 S 2.691 3.309 14 O -0.920 6.920 15 O -0.966 6.966 16 N -0.852 5.852 17 C 0.035 3.965 18 C 0.035 3.965 19 C -0.534 4.534 20 H 0.080 0.920 21 C -0.127 4.127 22 N -0.509 5.509 23 Si 0.712 3.288 24 H -0.205 1.205 25 H -0.212 1.212 26 H -0.198 1.198 27 C -0.248 4.248 28 C -0.192 4.192 29 H 0.082 0.918 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.261 0.739 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.100 0.900 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.327 -15.967 -2.688 16.760 hybrid contribution 1.298 0.552 -0.157 1.420 sum -3.028 -15.415 -2.845 15.965 Atomic orbital electron populations 1.23295 0.76222 1.03454 1.03034 1.86438 1.23454 1.33032 1.84622 1.23994 0.92208 0.82482 0.75621 1.91071 1.66508 1.34401 1.40545 1.20751 0.87594 0.95686 1.04136 0.86447 1.21450 0.96619 1.00523 0.95193 1.21577 0.94272 0.97361 1.02472 1.21479 1.00789 0.94876 0.98022 1.21343 0.88733 1.04034 0.99997 1.30547 1.08020 1.04605 1.25863 0.83874 1.05261 0.75397 0.74642 0.75630 1.93675 1.27492 1.84779 1.86098 1.93541 1.77957 1.80705 1.44375 1.55244 1.62454 1.27251 1.40245 1.20754 0.95625 0.92540 0.87568 1.18913 0.92353 0.86583 0.98608 1.20347 0.90289 1.50086 0.92708 0.92045 1.24957 0.98653 0.94435 0.94674 1.69980 1.28326 1.47964 1.04642 0.86706 0.83783 0.78971 0.79301 1.20485 1.21228 1.19763 1.23097 0.97155 1.05463 0.99122 1.22513 1.02695 1.03024 0.90973 0.91782 0.88196 0.91523 0.90190 0.90925 0.91387 0.91204 0.91095 0.91296 0.90319 0.88382 0.73901 0.92290 0.93247 0.92967 0.91388 0.90446 0.89957 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.42 10.47 -39.26 -0.41 -4.83 16 3 C 0.42 6.07 6.92 36.00 0.25 6.32 16 4 O -0.44 -7.93 11.78 -27.11 -0.32 -8.25 16 5 C -0.06 -0.77 2.16 -91.77 -0.20 -0.97 16 6 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 7 C -0.10 -0.97 5.14 -26.73 -0.14 -1.11 16 8 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 9 C -0.11 -1.25 5.92 -26.73 -0.16 -1.41 16 10 C -0.10 -1.39 5.07 -26.73 -0.14 -1.52 16 11 C -0.58 -8.48 1.86 -26.73 -0.05 -8.53 16 12 H 0.14 2.05 8.10 -51.93 -0.42 1.63 16 13 S 2.60 48.10 4.56 -107.50 -0.49 47.61 16 14 O -0.93 -19.84 13.63 -67.55 -0.92 -20.77 16 15 O -0.98 -19.55 17.96 -57.54 -1.03 -20.59 16 16 N -1.09 -21.76 5.47 -10.62 -0.06 -21.82 16 17 C 0.16 3.44 6.21 -4.04 -0.03 3.42 16 18 C 0.04 0.87 1.76 -155.66 -0.27 0.60 16 19 C -0.50 -12.45 7.30 -34.44 -0.25 -12.71 16 20 H 0.06 1.55 7.82 -52.48 -0.41 1.14 16 21 C 0.08 1.94 5.39 -17.82 -0.10 1.84 16 22 N -0.87 -22.55 12.92 55.43 0.72 -21.83 16 23 Si 0.88 19.82 29.55 -169.99 -5.02 14.80 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 C -0.21 -4.59 9.88 -26.73 -0.26 -4.85 16 28 C -0.15 -3.47 9.45 -26.74 -0.25 -3.73 16 29 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 32 H 0.08 0.66 8.11 -51.93 -0.42 0.24 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 1.00 8.11 -51.93 -0.42 0.58 16 39 H 0.10 1.50 7.91 -51.93 -0.41 1.09 16 40 H 0.42 8.71 7.33 -34.47 -0.25 8.45 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.05 1.03 7.48 -51.93 -0.39 0.65 16 43 H 0.26 6.49 8.32 -40.82 -0.34 6.15 16 44 H 0.07 1.39 8.08 -51.93 -0.42 0.97 16 45 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 46 H 0.08 1.97 8.14 -51.93 -0.42 1.55 16 47 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 388.30 15.07 5.85 5.85 Total: -1.00 -31.53 388.30 -10.15 -41.68 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -7.78 Total: 10.64 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: -0.69 Total: -22.50 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 0.66 Total: -43.65 kcal Atomic # 8 Polarization: -51.74 SS G_CDS: -2.68 Total: -54.43 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 16 Polarization: 48.10 SS G_CDS: -0.49 Total: 47.61 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.53 -10.15 -41.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332131573.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.129 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds