Wall clock time and date at job start Wed Apr 1 2020 03:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.55486 * 2 1 4 4 C 1.53274 * 109.51364 * 120.12552 * 2 1 3 5 5 N 1.47159 * 108.53209 * 172.74161 * 4 2 1 6 6 S 1.65602 * 121.05286 * 128.92302 * 5 4 2 7 7 O 1.42098 * 104.27795 * 206.07846 * 6 5 4 8 8 O 1.42101 * 104.27654 * 333.93733 * 6 5 4 9 9 C 1.81401 * 104.44654 * 90.00349 * 6 5 4 10 10 C 1.53003 * 109.47010 * 174.01723 * 9 6 5 11 11 C 1.50699 * 115.55275 * 65.27689 * 10 9 6 12 12 H 1.08003 * 120.00009 * 268.54964 * 11 10 9 13 13 C 1.37870 * 120.00009 * 88.54393 * 11 10 9 14 14 N 1.31519 * 119.99890 * 174.70091 * 13 11 10 15 15 Si 1.86800 * 120.00176 * 354.70247 * 13 11 10 16 16 H 1.48502 * 109.47015 * 92.55030 * 15 13 11 17 17 H 1.48498 * 109.46933 * 212.55175 * 15 13 11 18 18 H 1.48500 * 109.47222 * 332.55178 * 15 13 11 19 19 C 1.53003 * 117.49509 * 279.60631 * 10 9 6 20 20 C 1.52999 * 117.49526 * 210.94641 * 10 9 6 21 21 C 1.47279 * 117.89698 * 309.20185 * 5 4 2 22 22 C 1.52242 * 108.61086 * 49.24359 * 21 5 4 23 23 C 1.53964 * 110.25236 * 186.87529 * 22 21 5 24 24 C 1.54608 * 103.87982 * 241.92374 * 23 22 21 25 25 O 1.44474 * 104.82144 * 336.11455 * 24 23 22 26 26 C 1.44541 * 105.36692 * 40.15885 * 25 24 23 27 27 O 1.42208 * 110.91894 * 309.54837 * 22 21 5 28 28 H 1.08999 * 109.47158 * 299.88157 * 1 2 3 29 29 H 1.09003 * 109.47173 * 59.87392 * 1 2 3 30 30 H 1.08996 * 109.47189 * 179.87446 * 1 2 3 31 31 H 1.09003 * 109.62503 * 53.03341 * 4 2 1 32 32 H 1.09000 * 109.62984 * 292.46198 * 4 2 1 33 33 H 1.08997 * 109.47181 * 294.01479 * 9 6 5 34 34 H 1.08992 * 109.47048 * 54.01740 * 9 6 5 35 35 H 0.96998 * 120.00228 * 180.02562 * 14 13 11 36 36 H 1.08996 * 117.50092 * 359.97438 * 19 10 9 37 37 H 1.09000 * 117.50011 * 145.02127 * 19 10 9 38 38 H 1.09001 * 117.49770 * 214.97448 * 20 10 9 39 39 H 1.08996 * 117.50527 * 359.97438 * 20 10 9 40 40 H 1.08997 * 109.68410 * 169.02852 * 21 5 4 41 41 H 1.09000 * 109.68169 * 289.58121 * 21 5 4 42 42 H 1.08999 * 110.54292 * 0.52083 * 23 22 21 43 43 H 1.08994 * 110.54615 * 123.17740 * 23 22 21 44 44 H 1.08998 * 110.37147 * 94.95062 * 24 23 22 45 45 H 1.09006 * 110.36762 * 217.27878 * 24 23 22 46 46 H 1.09002 * 110.39312 * 201.20338 * 26 25 24 47 47 H 1.08998 * 110.39638 * 78.81268 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0420 -0.7251 1.2496 5 7 3.5028 -0.8668 1.1425 6 16 4.4996 -0.3946 2.3777 7 8 5.7316 -0.0919 1.7376 8 8 3.7615 0.6106 3.0589 9 6 4.6674 -1.8737 3.4145 10 6 5.6919 -1.6084 4.5195 11 6 5.3049 -0.5553 5.5256 12 1 5.5897 0.4742 5.3664 13 6 4.5870 -0.9061 6.6492 14 7 4.3390 -0.0085 7.5779 15 14 3.9666 -2.6563 6.8525 16 1 4.9653 -3.4503 7.6125 17 1 2.6789 -2.6423 7.5919 18 1 3.7626 -3.2678 5.5147 19 6 7.1727 -1.7246 4.1525 20 6 6.5127 -2.7978 5.0220 21 6 4.0507 -1.4360 -0.1004 22 6 3.4246 -0.7114 -1.2840 23 6 3.8389 -1.3885 -2.6032 24 6 4.6172 -0.2860 -3.3575 25 8 4.1273 0.9560 -2.8054 26 6 3.9905 0.7167 -1.3865 27 8 2.0078 -0.6768 -1.1665 28 1 -0.3633 0.5120 0.8910 29 1 -0.3634 0.5158 -0.8889 30 1 -0.3633 -1.0276 -0.0023 31 1 1.5823 -1.7113 1.3147 32 1 1.7946 -0.1435 2.1376 33 1 3.7035 -2.1143 3.8629 34 1 5.0022 -2.7107 2.8019 35 1 3.8343 -0.2554 8.3685 36 1 7.4170 -1.9904 3.1240 37 1 7.8670 -1.0396 4.6390 38 1 6.7732 -2.8183 6.0802 39 1 6.3227 -3.7693 4.5658 40 1 5.1322 -1.3024 -0.1199 41 1 3.8105 -2.4978 -0.1550 42 1 4.4830 -2.2457 -2.4074 43 1 2.9589 -1.6940 -3.1691 44 1 5.6874 -0.3856 -3.1765 45 1 4.4060 -0.3357 -4.4258 46 1 3.2967 1.4327 -0.9457 47 1 4.9619 0.7765 -0.8957 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000333026592.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:39 Heat of formation + Delta-G solvation = -119.071068 kcal Electronic energy + Delta-G solvation = -30876.951034 eV Core-core repulsion = 26767.570530 eV Total energy + Delta-G solvation = -4109.380505 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.78728 -38.03862 -37.20746 -36.57208 -35.37630 -34.85408 -33.52829 -32.22629 -30.80412 -29.11171 -28.57538 -26.83059 -25.63300 -24.82120 -23.55299 -21.78795 -21.60581 -20.03242 -19.51279 -18.58161 -17.53529 -17.31129 -16.77476 -16.53112 -15.92919 -15.83070 -15.29884 -15.23949 -15.13953 -14.61990 -14.26718 -14.00106 -13.95488 -13.85387 -13.09332 -13.06032 -12.81926 -12.70115 -12.48481 -12.42056 -12.29893 -11.84645 -11.78449 -11.74963 -11.54084 -11.51518 -11.32275 -11.31135 -11.15484 -11.01757 -10.72757 -10.49749 -10.45082 -10.28422 -10.14406 -9.84178 -9.76734 -9.23298 -8.88656 -8.72260 -8.48111 -6.22881 -4.30956 0.72734 2.99746 3.17030 3.27153 3.28717 3.34168 3.73204 4.23941 4.28981 4.33247 4.40408 4.49887 4.65359 4.67971 4.75394 4.83376 4.83719 4.95105 5.00374 5.06990 5.14143 5.24499 5.33686 5.36292 5.39404 5.44790 5.52413 5.56138 5.59818 5.65533 5.69038 5.73091 5.82746 5.86830 5.95264 5.97174 6.07865 6.11862 6.35860 6.47603 6.52052 6.59357 6.80822 6.99494 7.08268 7.52849 8.30392 8.81925 9.37978 10.88510 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017209 B = 0.004005 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.662696 B = 6989.544121 C = 7670.420155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.071 3.929 3 H 0.069 0.931 4 C 0.086 3.914 5 N -1.015 6.015 6 S 2.609 3.391 7 O -0.962 6.962 8 O -0.933 6.933 9 C -0.573 4.573 10 C 0.000 4.000 11 C -0.511 4.511 12 H 0.087 0.913 13 C 0.090 3.910 14 N -0.881 5.881 15 Si 0.873 3.127 16 H -0.274 1.274 17 H -0.289 1.289 18 H -0.258 1.258 19 C -0.176 4.176 20 C -0.184 4.184 21 C 0.098 3.902 22 C 0.081 3.919 23 C -0.141 4.141 24 C 0.044 3.956 25 O -0.369 6.369 26 C 0.017 3.983 27 O -0.357 6.357 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.126 0.874 34 H 0.105 0.895 35 H 0.268 0.732 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.064 0.936 45 H 0.094 0.906 46 H 0.098 0.902 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.218 -6.119 -18.746 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.012 3.988 3 H 0.087 0.913 4 C -0.039 4.039 5 N -0.851 5.851 6 S 2.707 3.293 7 O -0.953 6.953 8 O -0.923 6.923 9 C -0.705 4.705 10 C -0.003 4.003 11 C -0.548 4.548 12 H 0.105 0.895 13 C -0.115 4.115 14 N -0.516 5.516 15 Si 0.700 3.300 16 H -0.200 1.200 17 H -0.216 1.216 18 H -0.182 1.182 19 C -0.214 4.214 20 C -0.223 4.223 21 C -0.028 4.028 22 C 0.040 3.960 23 C -0.179 4.179 24 C -0.033 4.033 25 O -0.288 6.288 26 C -0.060 4.060 27 O -0.276 6.276 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.127 0.873 33 H 0.145 0.855 34 H 0.124 0.876 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.124 0.876 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.083 0.917 45 H 0.113 0.887 46 H 0.116 0.884 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.124 -5.070 -18.700 19.810 hybrid contribution -0.380 -1.861 0.808 2.064 sum -4.504 -6.931 -17.893 19.710 Atomic orbital electron populations 1.21728 0.91975 1.03216 1.03072 1.22536 0.95492 0.95903 0.84833 0.91328 1.22177 0.79704 1.01944 1.00114 1.58400 1.16814 1.80253 1.29634 1.05228 0.73383 0.77370 0.73330 1.93494 1.44268 1.83343 1.74158 1.93579 1.71257 1.53846 1.73662 1.30327 1.09672 1.18591 1.11917 1.18876 0.87475 0.98516 0.95438 1.20328 1.36652 0.93988 1.03809 0.89548 1.24945 0.94450 0.97155 0.94996 1.69893 1.38579 1.34344 1.08789 0.86936 0.78461 0.85482 0.79080 1.20025 1.21590 1.18189 1.23028 0.96944 1.02520 0.98875 1.22990 1.06634 0.92765 0.99889 1.21928 0.99783 0.97815 0.83227 1.22514 0.82843 0.95437 0.95254 1.22903 1.01621 0.98993 0.94349 1.23481 0.97764 0.83162 0.98881 1.89161 1.86707 1.32996 1.19928 1.24128 1.01938 0.96654 0.83262 1.87863 1.18974 1.77532 1.43225 0.90341 0.91465 0.91555 0.90652 0.87297 0.85535 0.87622 0.92211 0.90047 0.88563 0.88839 0.90659 0.87558 0.90525 0.89055 0.88871 0.91747 0.88738 0.88434 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.57 37.16 0.36 -0.96 16 2 C 0.07 0.85 3.16 -26.59 -0.08 0.76 16 3 H 0.07 0.86 6.12 -51.93 -0.32 0.55 16 4 C 0.09 1.11 5.94 -3.54 -0.02 1.09 16 5 N -1.01 -14.64 3.17 -113.57 -0.36 -15.00 16 6 S 2.61 49.50 5.21 -107.50 -0.56 48.94 16 7 O -0.96 -19.28 16.61 -57.54 -0.96 -20.24 16 8 O -0.93 -21.26 16.28 -57.54 -0.94 -22.20 16 9 C -0.57 -10.90 5.65 37.16 0.21 -10.69 16 10 C 0.00 -0.01 0.79 -155.66 -0.12 -0.13 16 11 C -0.51 -14.03 8.77 -34.44 -0.30 -14.33 16 12 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 13 C 0.09 2.51 5.47 -17.82 -0.10 2.41 16 14 N -0.88 -26.28 13.96 55.43 0.77 -25.51 16 15 Si 0.87 20.60 24.96 -169.99 -4.24 16.36 16 16 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.26 -5.57 5.68 56.52 0.32 -5.24 16 19 C -0.18 -3.54 9.96 -26.69 -0.27 -3.81 16 20 C -0.18 -3.73 7.67 -26.69 -0.20 -3.93 16 21 C 0.10 1.18 5.05 -4.00 -0.02 1.16 16 22 C 0.08 0.96 1.05 -90.01 -0.09 0.86 16 23 C -0.14 -1.26 6.53 -25.38 -0.17 -1.42 16 24 C 0.04 0.41 7.65 38.00 0.29 0.70 16 25 O -0.37 -4.89 11.65 -35.23 -0.41 -5.30 16 26 C 0.02 0.23 6.60 37.65 0.25 0.48 16 27 O -0.36 -4.43 9.82 -35.23 -0.35 -4.78 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.11 1.49 6.89 -51.93 -0.36 1.13 16 33 H 0.13 2.39 6.53 -51.93 -0.34 2.05 16 34 H 0.11 1.61 8.09 -51.93 -0.42 1.19 16 35 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16 38 H 0.09 1.98 7.34 -51.93 -0.38 1.60 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.11 1.26 6.61 -51.93 -0.34 0.91 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 0.62 7.71 -51.93 -0.40 0.22 16 43 H 0.09 0.81 7.99 -51.93 -0.41 0.39 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.10 1.33 5.91 -51.93 -0.31 1.03 16 47 H 0.08 1.11 7.65 -51.93 -0.40 0.71 16 LS Contribution 374.06 15.07 5.64 5.64 Total: -1.00 -34.11 374.06 -9.22 -43.33 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -7.54 Total: 6.56 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: -0.27 Total: -27.81 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.41 Total: -40.51 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: -2.65 Total: -52.51 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.24 Total: 16.36 kcal Atomic # 16 Polarization: 49.50 SS G_CDS: -0.56 Total: 48.94 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.11 -9.22 -43.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333026592.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.736 kcal (2) G-P(sol) polarization free energy of solvation -34.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds