Wall clock time and date at job start Wed Apr 1 2020 03:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.55486 * 2 1 4 4 C 1.53274 * 109.51364 * 120.12552 * 2 1 3 5 5 N 1.47159 * 108.53209 * 172.74161 * 4 2 1 6 6 S 1.65602 * 121.05286 * 128.92302 * 5 4 2 7 7 O 1.42098 * 104.27795 * 206.07846 * 6 5 4 8 8 O 1.42101 * 104.27654 * 333.93733 * 6 5 4 9 9 C 1.81401 * 104.44654 * 90.00349 * 6 5 4 10 10 C 1.53003 * 109.47010 * 174.01723 * 9 6 5 11 11 C 1.50699 * 115.55275 * 65.27689 * 10 9 6 12 12 H 1.08003 * 120.00009 * 268.54964 * 11 10 9 13 13 C 1.37870 * 120.00009 * 88.54393 * 11 10 9 14 14 N 1.31519 * 119.99890 * 174.70091 * 13 11 10 15 15 Si 1.86800 * 120.00176 * 354.70247 * 13 11 10 16 16 H 1.48502 * 109.47015 * 92.55030 * 15 13 11 17 17 H 1.48498 * 109.46933 * 212.55175 * 15 13 11 18 18 H 1.48500 * 109.47222 * 332.55178 * 15 13 11 19 19 C 1.53003 * 117.49509 * 279.60631 * 10 9 6 20 20 C 1.52999 * 117.49526 * 210.94641 * 10 9 6 21 21 C 1.47279 * 117.89698 * 309.20185 * 5 4 2 22 22 C 1.52242 * 108.61086 * 49.24359 * 21 5 4 23 23 C 1.53964 * 110.25236 * 186.87529 * 22 21 5 24 24 C 1.54608 * 103.87982 * 241.92374 * 23 22 21 25 25 O 1.44474 * 104.82144 * 336.11455 * 24 23 22 26 26 C 1.44541 * 105.36692 * 40.15885 * 25 24 23 27 27 O 1.42208 * 110.91894 * 309.54837 * 22 21 5 28 28 H 1.08999 * 109.47158 * 299.88157 * 1 2 3 29 29 H 1.09003 * 109.47173 * 59.87392 * 1 2 3 30 30 H 1.08996 * 109.47189 * 179.87446 * 1 2 3 31 31 H 1.09003 * 109.62503 * 53.03341 * 4 2 1 32 32 H 1.09000 * 109.62984 * 292.46198 * 4 2 1 33 33 H 1.08997 * 109.47181 * 294.01479 * 9 6 5 34 34 H 1.08992 * 109.47048 * 54.01740 * 9 6 5 35 35 H 0.96998 * 120.00228 * 180.02562 * 14 13 11 36 36 H 1.08996 * 117.50092 * 359.97438 * 19 10 9 37 37 H 1.09000 * 117.50011 * 145.02127 * 19 10 9 38 38 H 1.09001 * 117.49770 * 214.97448 * 20 10 9 39 39 H 1.08996 * 117.50527 * 359.97438 * 20 10 9 40 40 H 1.08997 * 109.68410 * 169.02852 * 21 5 4 41 41 H 1.09000 * 109.68169 * 289.58121 * 21 5 4 42 42 H 1.08999 * 110.54292 * 0.52083 * 23 22 21 43 43 H 1.08994 * 110.54615 * 123.17740 * 23 22 21 44 44 H 1.08998 * 110.37147 * 94.95062 * 24 23 22 45 45 H 1.09006 * 110.36762 * 217.27878 * 24 23 22 46 46 H 1.09002 * 110.39312 * 201.20338 * 26 25 24 47 47 H 1.08998 * 110.39638 * 78.81268 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0420 -0.7251 1.2496 5 7 3.5028 -0.8668 1.1425 6 16 4.4996 -0.3946 2.3777 7 8 5.7316 -0.0919 1.7376 8 8 3.7615 0.6106 3.0589 9 6 4.6674 -1.8737 3.4145 10 6 5.6919 -1.6084 4.5195 11 6 5.3049 -0.5553 5.5256 12 1 5.5897 0.4742 5.3664 13 6 4.5870 -0.9061 6.6492 14 7 4.3390 -0.0085 7.5779 15 14 3.9666 -2.6563 6.8525 16 1 4.9653 -3.4503 7.6125 17 1 2.6789 -2.6423 7.5919 18 1 3.7626 -3.2678 5.5147 19 6 7.1727 -1.7246 4.1525 20 6 6.5127 -2.7978 5.0220 21 6 4.0507 -1.4360 -0.1004 22 6 3.4246 -0.7114 -1.2840 23 6 3.8389 -1.3885 -2.6032 24 6 4.6172 -0.2860 -3.3575 25 8 4.1273 0.9560 -2.8054 26 6 3.9905 0.7167 -1.3865 27 8 2.0078 -0.6768 -1.1665 28 1 -0.3633 0.5120 0.8910 29 1 -0.3634 0.5158 -0.8889 30 1 -0.3633 -1.0276 -0.0023 31 1 1.5823 -1.7113 1.3147 32 1 1.7946 -0.1435 2.1376 33 1 3.7035 -2.1143 3.8629 34 1 5.0022 -2.7107 2.8019 35 1 3.8343 -0.2554 8.3685 36 1 7.4170 -1.9904 3.1240 37 1 7.8670 -1.0396 4.6390 38 1 6.7732 -2.8183 6.0802 39 1 6.3227 -3.7693 4.5658 40 1 5.1322 -1.3024 -0.1199 41 1 3.8105 -2.4978 -0.1550 42 1 4.4830 -2.2457 -2.4074 43 1 2.9589 -1.6940 -3.1691 44 1 5.6874 -0.3856 -3.1765 45 1 4.4060 -0.3357 -4.4258 46 1 3.2967 1.4327 -0.9457 47 1 4.9619 0.7765 -0.8957 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000333026592.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:38 Heat of formation + Delta-G solvation = -146.097951 kcal Electronic energy + Delta-G solvation = -30878.123008 eV Core-core repulsion = 26767.570530 eV Total energy + Delta-G solvation = -4110.552478 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.69847 -38.98367 -38.86371 -38.13410 -36.92363 -35.92765 -34.41844 -34.31933 -31.61176 -30.19819 -29.90813 -27.79000 -27.62736 -25.87183 -24.38374 -23.37323 -22.41803 -21.29663 -20.97214 -19.94436 -18.86939 -18.56184 -18.28327 -17.59407 -17.20356 -16.84817 -16.77825 -16.67190 -16.19399 -16.00356 -15.55746 -15.24191 -14.92588 -14.83751 -14.81410 -14.56599 -13.99616 -13.88682 -13.71736 -13.43960 -13.25243 -13.24654 -13.08588 -13.04116 -12.70701 -12.67423 -12.58282 -12.56788 -12.42588 -12.32250 -12.07663 -12.06726 -11.83233 -11.72153 -11.36611 -11.24572 -10.99668 -10.76933 -10.74139 -10.33627 -9.75094 -8.34454 -6.48272 -0.72265 1.34264 1.35330 1.48584 1.73056 2.33575 2.47263 2.84094 2.89474 2.96623 3.11625 3.18965 3.36139 3.58840 3.62062 3.67184 3.81534 3.95714 4.04003 4.13344 4.18749 4.19695 4.27427 4.29919 4.33478 4.35449 4.42129 4.57582 4.60641 4.63116 4.72272 4.80336 4.82824 4.83465 4.85284 4.98246 4.99716 5.05410 5.08574 5.18243 5.28178 5.42485 5.43913 5.59313 5.66522 6.16563 6.17203 6.63233 7.24717 8.81949 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017209 B = 0.004005 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.662696 B = 6989.544121 C = 7670.420155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.069 3.931 3 H 0.050 0.950 4 C 0.080 3.920 5 N -1.007 6.007 6 S 2.612 3.388 7 O -0.982 6.982 8 O -0.989 6.989 9 C -0.568 4.568 10 C -0.035 4.035 11 C -0.515 4.515 12 H 0.026 0.974 13 C 0.026 3.974 14 N -0.942 5.942 15 Si 0.934 3.066 16 H -0.262 1.262 17 H -0.294 1.294 18 H -0.215 1.215 19 C -0.173 4.173 20 C -0.167 4.167 21 C 0.091 3.909 22 C 0.078 3.922 23 C -0.132 4.132 24 C 0.034 3.966 25 O -0.394 6.394 26 C 0.012 3.988 27 O -0.358 6.358 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.131 0.869 34 H 0.158 0.842 35 H 0.269 0.731 36 H 0.115 0.885 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.120 0.880 40 H 0.108 0.892 41 H 0.114 0.886 42 H 0.121 0.879 43 H 0.100 0.900 44 H 0.075 0.925 45 H 0.115 0.885 46 H 0.081 0.919 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.700 -10.883 -21.344 24.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.010 3.990 3 H 0.068 0.932 4 C -0.045 4.045 5 N -0.846 5.846 6 S 2.712 3.288 7 O -0.972 6.972 8 O -0.979 6.979 9 C -0.701 4.701 10 C -0.038 4.038 11 C -0.552 4.552 12 H 0.044 0.956 13 C -0.173 4.173 14 N -0.579 5.579 15 Si 0.756 3.244 16 H -0.187 1.187 17 H -0.221 1.221 18 H -0.137 1.137 19 C -0.210 4.210 20 C -0.206 4.206 21 C -0.034 4.034 22 C 0.036 3.964 23 C -0.170 4.170 24 C -0.042 4.042 25 O -0.313 6.313 26 C -0.065 4.065 27 O -0.277 6.277 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.123 0.877 32 H 0.110 0.890 33 H 0.149 0.851 34 H 0.176 0.824 35 H 0.078 0.922 36 H 0.133 0.867 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.138 0.862 40 H 0.126 0.874 41 H 0.132 0.868 42 H 0.139 0.861 43 H 0.118 0.882 44 H 0.093 0.907 45 H 0.133 0.867 46 H 0.099 0.901 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.578 -9.827 -21.337 23.933 hybrid contribution -0.145 -0.219 1.527 1.549 sum -4.723 -10.046 -19.810 22.709 Atomic orbital electron populations 1.21731 0.89894 1.04263 1.03625 1.22594 0.97095 0.94851 0.84503 0.93223 1.22389 0.78759 1.03428 0.99902 1.57968 1.16981 1.80354 1.29282 1.04774 0.73045 0.77406 0.73621 1.93455 1.45375 1.83933 1.74462 1.93514 1.72368 1.56667 1.75362 1.30179 1.08853 1.19819 1.11199 1.18795 0.89655 0.99114 0.96222 1.20443 1.36232 0.93048 1.05501 0.95575 1.25963 0.94611 1.02346 0.94372 1.70070 1.40551 1.37393 1.09930 0.85969 0.77675 0.79591 0.81195 1.18707 1.22060 1.13670 1.23110 0.94892 1.02267 1.00703 1.23098 1.04128 0.93786 0.99555 1.22283 0.99915 0.99593 0.81574 1.22659 0.82505 0.94418 0.96806 1.22959 1.02293 0.99331 0.92378 1.23792 0.98475 0.81865 1.00026 1.89131 1.87116 1.35392 1.19694 1.24087 1.00937 0.97952 0.83520 1.87871 1.19334 1.77270 1.43207 0.89696 0.91086 0.90185 0.87674 0.88958 0.85081 0.82430 0.92208 0.86707 0.90316 0.90273 0.86223 0.87422 0.86840 0.86071 0.88157 0.90711 0.86690 0.90103 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.57 71.98 0.69 -1.64 16 2 C 0.07 1.57 3.16 30.69 0.10 1.66 16 3 H 0.05 1.31 6.12 -2.39 -0.01 1.29 16 4 C 0.08 1.95 5.94 86.35 0.51 2.46 16 5 N -1.01 -27.21 3.17 -513.21 -1.63 -28.84 16 6 S 2.61 98.29 5.21 -56.49 -0.29 97.99 16 7 O -0.98 -39.24 16.61 -127.65 -2.12 -41.36 16 8 O -0.99 -47.51 16.28 -127.65 -2.08 -49.58 16 9 C -0.57 -19.72 5.65 71.98 0.41 -19.32 16 10 C -0.04 -1.53 0.79 -52.93 -0.04 -1.57 16 11 C -0.52 -29.34 8.77 25.60 0.22 -29.12 16 12 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 13 C 0.03 1.50 5.47 84.65 0.46 1.97 16 14 N -0.94 -59.20 13.96 21.45 0.30 -58.90 16 15 Si 0.93 41.35 24.96 68.60 1.71 43.06 16 16 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 17 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 18 H -0.21 -7.96 5.68 99.48 0.57 -7.39 16 19 C -0.17 -6.55 9.96 30.62 0.30 -6.25 16 20 C -0.17 -6.11 7.67 30.62 0.23 -5.87 16 21 C 0.09 1.88 5.05 85.98 0.43 2.31 16 22 C 0.08 1.66 1.05 -10.40 -0.01 1.65 16 23 C -0.13 -1.87 6.53 31.47 0.21 -1.67 16 24 C 0.03 0.56 7.65 72.53 0.55 1.12 16 25 O -0.39 -10.24 11.65 -148.98 -1.74 -11.97 16 26 C 0.01 0.33 6.60 72.30 0.48 0.80 16 27 O -0.36 -8.08 9.82 -148.98 -1.46 -9.55 16 28 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.09 2.55 6.89 -2.39 -0.02 2.54 16 33 H 0.13 4.45 6.53 -2.39 -0.02 4.44 16 34 H 0.16 3.78 8.09 -2.39 -0.02 3.76 16 35 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 36 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 37 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 38 H 0.08 3.13 7.34 -2.39 -0.02 3.11 16 39 H 0.12 3.36 8.14 -2.39 -0.02 3.34 16 40 H 0.11 2.21 6.61 -2.39 -0.02 2.20 16 41 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.12 1.00 7.71 -2.39 -0.02 0.99 16 43 H 0.10 1.33 7.99 -2.39 -0.02 1.31 16 44 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.12 1.36 8.14 -2.38 -0.02 1.35 16 46 H 0.08 2.36 5.91 -2.39 -0.01 2.34 16 47 H 0.07 1.87 7.65 -2.39 -0.02 1.85 16 Total: -1.00 -80.92 374.06 -1.94 -82.85 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.82 Total: 29.76 kcal Atomic # 6 Polarization: -58.01 SS G_CDS: 4.55 Total: -53.46 kcal Atomic # 7 Polarization: -86.41 SS G_CDS: -1.33 Total: -87.74 kcal Atomic # 8 Polarization: -105.07 SS G_CDS: -7.40 Total: -112.47 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 1.71 Total: 43.06 kcal Atomic # 16 Polarization: 98.29 SS G_CDS: -0.29 Total: 97.99 kcal Total: -80.92 -1.94 -82.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333026592.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.245 kcal (2) G-P(sol) polarization free energy of solvation -80.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds