Wall clock time and date at job start Wed Apr 1 2020 03:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.51479 * 2 1 4 4 C 1.53297 * 109.50941 * 120.09541 * 2 1 3 5 5 N 1.47160 * 108.47136 * 172.82905 * 4 2 1 6 6 S 1.65595 * 121.04100 * 128.90345 * 5 4 2 7 7 O 1.42104 * 104.27939 * 26.05564 * 6 5 4 8 8 O 1.42108 * 104.27824 * 153.90611 * 6 5 4 9 9 C 1.81400 * 104.45417 * 269.98025 * 6 5 4 10 10 C 1.52998 * 109.47232 * 172.59510 * 9 6 5 11 11 C 1.50701 * 115.55127 * 65.15962 * 10 9 6 12 12 H 1.08005 * 119.99633 * 264.81312 * 11 10 9 13 13 C 1.37868 * 120.00255 * 84.81091 * 11 10 9 14 14 N 1.31520 * 119.99990 * 352.62727 * 13 11 10 15 15 Si 1.86800 * 120.00121 * 172.62238 * 13 11 10 16 16 H 1.48499 * 109.47156 * 0.02562 * 15 13 11 17 17 H 1.48493 * 109.47136 * 120.00436 * 15 13 11 18 18 H 1.48505 * 109.47220 * 240.00387 * 15 13 11 19 19 C 1.53001 * 117.49770 * 279.48604 * 10 9 6 20 20 C 1.52999 * 117.49749 * 210.82750 * 10 9 6 21 21 C 1.47265 * 117.91625 * 308.88480 * 5 4 2 22 22 C 1.52644 * 108.45622 * 49.49844 * 21 5 4 23 23 C 1.53964 * 110.18843 * 72.10930 * 22 21 5 24 24 C 1.54621 * 103.88446 * 118.23165 * 23 22 21 25 25 O 1.44472 * 104.81952 * 23.87491 * 24 23 22 26 26 C 1.44548 * 105.36404 * 319.84066 * 25 24 23 27 27 O 1.42208 * 110.86531 * 309.51379 * 22 21 5 28 28 H 1.09000 * 109.47360 * 299.90617 * 1 2 3 29 29 H 1.09007 * 109.47010 * 59.90568 * 1 2 3 30 30 H 1.08998 * 109.47448 * 179.89915 * 1 2 3 31 31 H 1.09007 * 109.63319 * 53.13857 * 4 2 1 32 32 H 1.08993 * 109.80796 * 292.62609 * 4 2 1 33 33 H 1.09007 * 109.46871 * 292.59636 * 9 6 5 34 34 H 1.08997 * 109.47092 * 52.59202 * 9 6 5 35 35 H 0.97003 * 119.99703 * 185.02706 * 14 13 11 36 36 H 1.08995 * 117.49789 * 0.02562 * 19 10 9 37 37 H 1.08999 * 117.49732 * 145.02162 * 19 10 9 38 38 H 1.09000 * 117.49948 * 214.97925 * 20 10 9 39 39 H 1.09007 * 117.50002 * 359.97438 * 20 10 9 40 40 H 1.09003 * 109.63996 * 289.80987 * 21 5 4 41 41 H 1.08995 * 109.63890 * 169.18605 * 21 5 4 42 42 H 1.09004 * 110.54444 * 236.82685 * 23 22 21 43 43 H 1.08995 * 110.55074 * 359.62770 * 23 22 21 44 44 H 1.09001 * 110.36924 * 265.03782 * 24 23 22 45 45 H 1.09004 * 110.45708 * 142.75770 * 24 23 22 46 46 H 1.09000 * 110.38942 * 281.21008 * 26 25 24 47 47 H 1.08994 * 110.39660 * 158.81584 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0419 -0.7246 1.2502 5 7 3.5030 -0.8638 1.1429 6 16 4.4989 -0.3895 2.3780 7 8 3.6888 -0.4931 3.5409 8 8 5.6601 -1.1934 2.2202 9 6 4.8736 1.3480 2.0158 10 6 5.6430 1.9591 3.1885 11 6 7.0116 1.3804 3.4400 12 1 7.1397 0.5940 4.1691 13 6 8.1001 1.8549 2.7395 14 7 7.9264 2.7064 1.7523 15 14 9.8216 1.2885 3.1925 16 1 9.7462 0.3365 4.3296 17 1 10.4446 0.6156 2.0245 18 1 10.6423 2.4629 3.5830 19 6 4.8334 2.4129 4.4049 20 6 5.4459 3.4515 3.4618 21 6 4.0516 -1.4384 -0.0971 22 6 3.4245 -0.7130 -1.2847 23 6 3.9912 0.7143 -1.3951 24 6 4.6891 0.7307 -2.7747 25 8 4.0329 -0.3092 -3.5332 26 6 3.8360 -1.3966 -2.6014 27 8 2.0078 -0.6775 -1.1659 28 1 -0.3634 0.5124 0.8908 29 1 -0.3633 0.5153 -0.8892 30 1 -0.3634 -1.0276 -0.0018 31 1 1.5837 -1.7115 1.3149 32 1 1.7934 -0.1463 2.1400 33 1 5.4804 1.4081 1.1122 34 1 3.9437 1.8966 1.8660 35 1 8.6831 2.9841 1.2126 36 1 3.7527 2.2757 4.3697 37 1 5.2908 2.2932 5.3870 38 1 6.3060 4.0147 3.8240 39 1 4.7683 3.9981 2.8059 40 1 3.8099 -2.5001 -0.1471 41 1 5.1332 -1.3046 -0.1156 42 1 3.1864 1.4488 -1.3648 43 1 4.7121 0.9023 -0.5995 44 1 5.7506 0.5084 -2.6656 45 1 4.5525 1.6975 -3.2593 46 1 4.7631 -1.9537 -2.4665 47 1 3.0424 -2.0571 -2.9506 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000333026605.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:42 Heat of formation + Delta-G solvation = -126.491587 kcal Electronic energy + Delta-G solvation = -31293.137177 eV Core-core repulsion = 27183.434895 eV Total energy + Delta-G solvation = -4109.702283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.67354 -38.01583 -36.85717 -36.44564 -35.28330 -34.75737 -33.33135 -32.12040 -30.70610 -29.20636 -28.28227 -26.72545 -25.58068 -24.69085 -23.06765 -22.05425 -21.29037 -19.88728 -19.47311 -18.45978 -17.35200 -17.27233 -16.63246 -16.30464 -16.01480 -15.63849 -15.28711 -15.09543 -14.77109 -14.51086 -14.40531 -14.11566 -13.87308 -13.66024 -13.24319 -12.77863 -12.75877 -12.52168 -12.19822 -12.09157 -11.94254 -11.72200 -11.71311 -11.59554 -11.43866 -11.36756 -11.19973 -11.12983 -11.03845 -10.97797 -10.67194 -10.56121 -10.42120 -10.30360 -10.11432 -9.83557 -9.70933 -9.03971 -8.74545 -8.64655 -8.16041 -6.22013 -4.32917 0.86592 3.10716 3.23077 3.31480 3.36592 3.38542 3.85907 4.30772 4.32087 4.45961 4.52449 4.67243 4.70467 4.82714 4.83841 5.00831 5.03588 5.08156 5.12378 5.18625 5.20787 5.22451 5.38471 5.50829 5.52494 5.58808 5.62981 5.66060 5.69842 5.74050 5.80112 5.84044 5.90875 6.01646 6.11234 6.18901 6.28535 6.51529 6.58414 6.64042 6.64982 6.90883 7.12198 7.15517 7.31757 7.72774 8.11902 8.73224 9.38961 10.85538 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012323 B = 0.004879 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.545975 B = 5737.188443 C = 6708.687508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.069 3.931 3 H 0.067 0.933 4 C 0.094 3.906 5 N -1.012 6.012 6 S 2.602 3.398 7 O -0.966 6.966 8 O -0.945 6.945 9 C -0.553 4.553 10 C 0.043 3.957 11 C -0.517 4.517 12 H 0.068 0.932 13 C 0.083 3.917 14 N -0.874 5.874 15 Si 0.891 3.109 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.282 1.282 19 C -0.207 4.207 20 C -0.139 4.139 21 C 0.106 3.894 22 C 0.076 3.924 23 C -0.186 4.186 24 C 0.047 3.953 25 O -0.371 6.371 26 C 0.061 3.939 27 O -0.356 6.356 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.133 0.867 34 H 0.097 0.903 35 H 0.263 0.737 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.067 0.933 45 H 0.094 0.906 46 H 0.080 0.920 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.844 -3.863 -7.733 14.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.010 3.990 3 H 0.085 0.915 4 C -0.032 4.032 5 N -0.848 5.848 6 S 2.701 3.299 7 O -0.957 6.957 8 O -0.935 6.935 9 C -0.686 4.686 10 C 0.040 3.960 11 C -0.554 4.554 12 H 0.087 0.913 13 C -0.122 4.122 14 N -0.509 5.509 15 Si 0.718 3.282 16 H -0.192 1.192 17 H -0.206 1.206 18 H -0.208 1.208 19 C -0.244 4.244 20 C -0.179 4.179 21 C -0.020 4.020 22 C 0.035 3.965 23 C -0.223 4.223 24 C -0.030 4.030 25 O -0.289 6.289 26 C -0.016 4.016 27 O -0.275 6.275 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.117 0.883 33 H 0.151 0.849 34 H 0.115 0.885 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.122 0.878 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.085 0.915 45 H 0.112 0.888 46 H 0.098 0.902 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.641 -4.395 -7.475 14.515 hybrid contribution 1.098 0.582 0.110 1.247 sum -10.543 -3.813 -7.365 13.414 Atomic orbital electron populations 1.21730 0.92255 1.03231 1.02840 1.22552 0.95281 0.95879 0.85294 0.91524 1.22056 0.80177 1.02161 0.98799 1.58374 1.16122 1.77898 1.32404 1.05465 0.73014 0.78476 0.72940 1.93495 1.68847 1.87280 1.46034 1.93538 1.48731 1.66342 1.84905 1.30091 1.07182 1.20758 1.10551 1.18284 0.93871 0.95229 0.88607 1.20563 0.89448 1.21193 1.24182 0.91348 1.24947 0.99286 0.93632 0.94383 1.69982 1.31467 1.31655 1.17822 0.86524 0.83821 0.78664 0.79160 1.19196 1.20571 1.20754 1.23193 0.97508 1.07501 0.96246 1.22554 1.01025 0.92819 1.01477 1.21879 0.99343 0.98026 0.82789 1.22763 0.82604 0.95225 0.95954 1.23647 1.01972 0.97347 0.99383 1.23435 0.96550 0.92387 0.90594 1.89162 1.79860 1.26421 1.33498 1.23294 1.01314 0.90410 0.86593 1.87841 1.19181 1.77500 1.43009 0.90629 0.91503 0.91532 0.90532 0.88348 0.84874 0.88474 0.92726 0.90744 0.89469 0.89513 0.91543 0.90296 0.87845 0.89489 0.89165 0.91463 0.88753 0.90211 0.87770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.57 37.16 0.36 -0.89 16 2 C 0.07 0.78 3.11 -26.58 -0.08 0.70 16 3 H 0.07 0.76 6.54 -51.93 -0.34 0.42 16 4 C 0.09 1.20 5.78 -3.53 -0.02 1.18 16 5 N -1.01 -15.41 3.17 -113.34 -0.36 -15.77 16 6 S 2.60 51.47 5.14 -107.50 -0.55 50.92 16 7 O -0.97 -20.66 16.81 -57.54 -0.97 -21.63 16 8 O -0.94 -21.81 16.57 -57.54 -0.95 -22.76 16 9 C -0.55 -11.05 5.64 37.16 0.21 -10.84 16 10 C 0.04 1.00 1.32 -155.66 -0.21 0.79 16 11 C -0.52 -13.75 8.24 -34.44 -0.28 -14.03 16 12 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 13 C 0.08 2.19 5.38 -17.82 -0.10 2.09 16 14 N -0.87 -23.15 12.97 55.43 0.72 -22.43 16 15 Si 0.89 20.90 29.55 -169.99 -5.02 15.88 16 16 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 C -0.21 -4.40 9.96 -26.69 -0.27 -4.67 16 20 C -0.14 -3.07 9.48 -26.69 -0.25 -3.32 16 21 C 0.11 1.44 4.82 -3.81 -0.02 1.42 16 22 C 0.08 0.95 1.04 -89.80 -0.09 0.86 16 23 C -0.19 -2.37 5.79 -25.38 -0.15 -2.52 16 24 C 0.05 0.57 7.65 38.01 0.29 0.86 16 25 O -0.37 -4.90 11.65 -35.23 -0.41 -5.31 16 26 C 0.06 0.70 6.92 37.66 0.26 0.96 16 27 O -0.36 -4.51 9.83 -35.23 -0.35 -4.85 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 32 H 0.10 1.22 7.21 -51.93 -0.37 0.84 16 33 H 0.13 2.74 6.62 -51.92 -0.34 2.40 16 34 H 0.10 1.63 8.09 -51.93 -0.42 1.21 16 35 H 0.26 6.64 8.32 -40.82 -0.34 6.30 16 36 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 37 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 38 H 0.09 2.02 8.14 -51.93 -0.42 1.60 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.10 1.47 7.17 -51.93 -0.37 1.10 16 42 H 0.09 1.07 6.66 -51.93 -0.35 0.72 16 43 H 0.09 1.26 5.68 -51.93 -0.29 0.96 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.08 0.78 7.84 -51.93 -0.41 0.37 16 47 H 0.10 1.07 8.07 -51.93 -0.42 0.65 16 LS Contribution 381.29 15.07 5.75 5.75 Total: -1.00 -31.96 381.29 -10.01 -41.97 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -7.51 Total: 5.66 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: -0.35 Total: -27.41 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.36 Total: -38.20 kcal Atomic # 8 Polarization: -51.88 SS G_CDS: -2.68 Total: -54.55 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 51.47 SS G_CDS: -0.55 Total: 50.92 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.96 -10.01 -41.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333026605.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.525 kcal (2) G-P(sol) polarization free energy of solvation -31.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds